| SRR3745126 | anther | wt | 7.32 | HC |
| SRR3745127 | anther | wt | 7.61 | HC |
| SRR6320498 | carpel | wt | 8.74 | HC |
| SRR5560728 | caryopsis | wild_type | 12.51 | HC |
| SRR5560729 | caryopsis | wild_type | 22.63 | HC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 41.82 | HC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 39.22 | HC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 35.62 | HC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 45.27 | HC |
| SRR7265400 | coleoptile | 2dA | 31.18 | HC |
| SRR7265401 | coleoptile | 2dA | 36.44 | HC |
| SRR7265402 | coleoptile | 2dA | 30.28 | HC |
| SRR7265403 | coleoptile | 2dN | 9.21 | HC |
| SRR7265404 | coleoptile | 2dN | 6.57 | HC |
| SRR7265405 | coleoptile | 2dN | 6.52 | HC |
| SRR7265406 | coleoptile | 3dA | 23.23 | HC |
| SRR7265407 | coleoptile | 3dA | 18.05 | HC |
| SRR7265408 | coleoptile | 3dA | 10.80 | HC |
| SRR7265409 | coleoptile | 3dN | 7.52 | HC |
| SRR7265410 | coleoptile | 3dN | 6.51 | HC |
| SRR7265411 | coleoptile | 3dN | 6.14 | HC |
| SRR7265412 | coleoptile | 4dA | 9.25 | HC |
| SRR7265413 | coleoptile | 4dA | 19.18 | HC |
| SRR7265414 | coleoptile | 4dA | 17.28 | HC |
| SRR7265415 | coleoptile | 4dN | 7.33 | HC |
| SRR7265416 | coleoptile | 4dN | 6.02 | HC |
| SRR7265417 | coleoptile | 4dN | 5.15 | HC |
| SRR7265418 | coleoptile | 3dN1dA | 10.41 | HC |
| SRR7265419 | coleoptile | 3dN1dA | 15.68 | HC |
| SRR7265420 | coleoptile | 3dN1dA | 17.20 | HC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 8.19 | HC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 5.81 | HC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 12.39 | HC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 12.91 | HC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 20.08 | HC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 9.59 | HC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 14.96 | HC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 4.83 | HC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 13.23 | HC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 16.04 | HC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 18.20 | HC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 14.83 | HC |
| SRR7265382 | embryo | 3hA | 9.74 | HC |
| SRR7265383 | embryo | 3hA | 9.22 | HC |
| SRR7265384 | embryo | 3hA | 6.92 | HC |
| SRR7265388 | embryo | 12hA | 35.25 | HC |
| SRR7265389 | embryo | 12hA | 33.03 | HC |
| SRR7265390 | embryo | 12hA | 31.78 | HC |
| SRR7265391 | embryo | 12hN | 10.01 | HC |
| SRR7265392 | embryo | 12hN | 9.49 | HC |
| SRR7265393 | embryo | 12hN | 10.80 | HC |
| SRR7265394 | embryo | 24hA | 32.82 | HC |
| SRR7265395 | embryo | 24hA | 30.03 | HC |
| SRR7265396 | embryo | 24hA | 33.14 | HC |
| SRR7265397 | embryo | 24hN | 8.95 | HC |
| SRR7265398 | embryo | 24hN | 9.95 | HC |
| SRR7265399 | embryo | 24hN | 9.93 | HC |
| SRR1213690 | flower | wt(flower buds) | 13.00 | HC |
| SRR1213691 | flower | wt | 19.71 | HC |
| SRR8240824 | leaf | wild_type | 2.80 | HC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 28.59 | HC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 18.36 | HC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 19.01 | HC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 30.55 | HC |
| SRR8611900 | leaf | Non-inoculated | 4.23 | HC |
| SRR8611901 | leaf | Non-inoculated | 4.00 | HC |
| SRR6216698 | leaf | nontransgenic rice plant | 18.93 | HC |
| SRR6216699 | leaf | nontransgenic rice plant | 27.57 | HC |
| SRR5856930 | leaf | salt | 3.59 | HC |
| SRR5856931 | leaf | salt | 2.45 | HC |
| SRR5856932 | leaf | salt | 2.70 | HC |
| SRR5856936 | leaf | salt | 2.53 | HC |
| SRR5856937 | leaf | salt | 3.92 | HC |
| SRR5856938 | leaf | salt | 2.65 | HC |
| SRR6053396 | leaf | gibberellic acid (GA) | 10.66 | HC |
| SRR6053397 | leaf | gibberellic acid (GA) | 11.24 | HC |
| SRR6168973 | leaf | none (control) | 79.47 | HC |
| SRR6168974 | leaf | none (control) | 95.48 | HC |
| SRR6168975 | leaf | none (control) | 23.03 | HC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 65.14 | HC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 60.09 | HC |
| SRR6168980 | leaf | none (control) | 2.63 | HC |
| SRR6168981 | leaf | none (control) | 9.01 | HC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 5.67 | HC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 16.11 | HC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 14.57 | HC |
| SRR8582890 | panicle | AM | 2.79 | HC |
| SRR5110429 | panicle | Dawn | 16.86 | HC |
| SRR5110430 | panicle | Dawn | 17.46 | HC |
| SRR5110431 | panicle | Dawn | 18.82 | HC |
| SRR5110432 | panicle | Dawn | 21.45 | HC |
| SRR5110433 | panicle | Dawn + 3.5h | 16.67 | HC |
| SRR5110434 | panicle | Dawn + 3.5h | 23.38 | HC |
| SRR5110435 | panicle | Dawn + 3.5h | 18.14 | HC |
| SRR5110436 | panicle | Dawn + 3.5h | 20.17 | HC |
| SRR5110437 | panicle | Dawn + 7h | 12.39 | HC |
| SRR5110438 | panicle | Dawn + 7h | 28.69 | HC |
| SRR5110439 | panicle | Dawn + 7h | 8.47 | HC |
| SRR5110440 | panicle | Dawn + 7h | 18.90 | HC |
| SRR5110441 | panicle | Dawn + 10.5h | 32.81 | HC |
| SRR5110442 | panicle | Dawn + 10.5h | 19.25 | HC |
| SRR5110443 | panicle | Dawn + 10.5h | 22.19 | HC |
| SRR5110444 | panicle | Dawn + 10.5h | 19.88 | HC |
| SRR5110445 | panicle | Dusk | 17.77 | HC |
| SRR5110446 | panicle | Dusk | 24.95 | HC |
| SRR5110447 | panicle | Dusk | 30.62 | HC |
| SRR5110448 | panicle | Dusk | 23.47 | HC |
| SRR5110449 | panicle | Dawn + 14h | 22.98 | HC |
| SRR5110450 | panicle | Dawn + 14h | 7.70 | HC |
| SRR5110451 | panicle | Dawn + 14h | 24.54 | HC |
| SRR5110452 | panicle | Dawn + 14h | 17.12 | HC |
| SRR5110453 | panicle | Dawn + 17.5h | 16.11 | HC |
| SRR5110454 | panicle | Dawn + 17.5h | 13.17 | HC |
| SRR5110455 | panicle | Dawn + 17.5h | 12.75 | HC |
| SRR5110456 | panicle | Dawn + 17.5h | 16.53 | HC |
| SRR5110457 | panicle | Dawn + 21h | 17.52 | HC |
| SRR5110458 | panicle | Dawn + 21h | 12.03 | HC |
| SRR5110459 | panicle | Dawn + 21h | 20.49 | HC |
| SRR5110460 | panicle | Dawn + 21h | 10.07 | HC |
| SRR1213696 | endosprem | wt(milk grains) | 2.64 | HC |
| SRR5278374 | pistil | "Balilla,S1" | 11.53 | HC |
| SRR5278375 | pistil | "Balilla,S1" | 10.16 | HC |
| SRR5278376 | pistil | "Balilla,S2" | 10.05 | HC |
| SRR5278377 | pistil | "Balilla,S2" | 9.87 | HC |
| SRR5278378 | pistil | "Balilla,S3" | 21.66 | HC |
| SRR5278379 | pistil | "Balilla,S3" | 29.50 | HC |
| SRR5126147 | root | "mock,1_day" | 4.40 | HC |
| SRR5126148 | root | "mock,1_day" | 7.12 | HC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 6.47 | HC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 6.04 | HC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 6.90 | HC |
| SRR5126169 | root | "mock,14_days" | 5.72 | HC |
| SRR1740434 | root_differentiation_zone | wt | 3.97 | HC |
| SRR1740435 | root_differentiation_zone | wt | 6.70 | HC |
| SRR1740436 | root_differentiation_zone | wt | 5.16 | HC |
| SRR1740431 | root_elongation_zone | wt | 8.81 | HC |
| SRR1740432 | root_elongation_zone | wt | 11.59 | HC |
| SRR1740433 | root_elongation_zone | wt | 17.17 | HC |
| SRR1740430 | root_meristematic_zone | wt | 5.00 | HC |
| SRR6441554 | seedling | wild_type | 6.75 | HC |
| SRR6441555 | seedling | wild_type | 14.68 | HC |
| SRR2154086 | seedling | wt | 21.34 | HC |
| SRR2154082 | seedling | wt | 24.53 | HC |
| SRR2154083 | seedling | wt | 36.72 | HC |
| SRR2154084 | seedling | wt | 45.82 | HC |
| SRR2154085 | seedling | wt | 29.26 | HC |
| SRR2154087 | seedling | wt | 16.44 | HC |
| SRR3098741 | seedling | wt | 6.89 | HC |
| SRR3098742 | seedling | wt | 19.55 | HC |
| SRR3098743 | seedling | wt | 10.56 | HC |
| SRR2857720 | seedling | drought_stress_1h | 5.73 | HC |
| SRR2857721 | seedling | drought_stress_6h | 5.72 | HC |
| SRR1944583 | seedling | no_treatment | 6.77 | HC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 16.57 | HC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 10.48 | HC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 17.94 | HC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 12.10 | HC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 17.33 | HC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 11.29 | HC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 17.39 | HC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 8.77 | HC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 9.67 | HC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 22.54 | HC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 9.85 | HC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 13.10 | HC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 10.61 | HC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 10.20 | HC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 6.68 | HC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 6.23 | HC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 4.44 | HC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 10.54 | HC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 12.57 | HC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 11.07 | HC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 11.62 | HC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 10.62 | HC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 8.46 | HC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 6.87 | HC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 6.37 | HC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 8.76 | HC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 10.23 | HC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 8.44 | HC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 9.45 | HC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 20.90 | HC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 14.11 | HC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 18.78 | HC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 47.96 | HC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 19.67 | HC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 29.12 | HC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 24.26 | HC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 23.66 | HC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 24.39 | HC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 30.35 | HC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 22.23 | HC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 25.31 | HC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 25.41 | HC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 19.23 | HC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 17.32 | HC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 26.19 | HC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 30.93 | HC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 27.09 | HC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 27.80 | HC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 18.02 | HC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 24.95 | HC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 25.05 | HC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 30.85 | HC |
| SRR1617553 | shoot_apical_meristem | no collect | 12.73 | HC |
| SRR1617554 | shoot_apical_meristem | no collect | 12.32 | HC |
| SRR1617556 | shoot_apical_meristem | no collect | 11.41 | HC |
| SRR1617557 | shoot_apical_meristem | no collect | 16.84 | HC |
| SRR1617558 | shoot_apical_meristem | no collect | 15.84 | HC |
| SRR1617559 | shoot_apical_meristem | no collect | 18.57 | HC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 37.20 | HC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 46.25 | HC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 48.40 | HC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 48.65 | HC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 47.84 | HC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 48.22 | HC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 60.63 | HC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 55.43 | HC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 54.13 | HC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 11.41 | HC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 11.30 | HC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 6.55 | HC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 5.70 | HC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 13.33 | HC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 9.55 | HC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 10.22 | HC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 12.64 | HC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 10.42 | HC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 21.76 | HC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 14.67 | HC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 19.81 | HC |