| SRR4457250 | 2nd_leaf | DAH4 | 6.31 | HC |
| SRR4457252 | 2nd_leaf | DAH12 | 6.15 | HC |
| SRR4457253 | 2nd_leaf | DAH12 | 5.95 | HC |
| SRR4457254 | 2nd_leaf | DAH12 | 5.84 | HC |
| SRR4457255 | 2nd_leaf | DAH20 | 9.26 | HC |
| SRR4457256 | 2nd_leaf | DAH20 | 8.73 | HC |
| SRR4457257 | 2nd_leaf | DAH20 | 8.48 | HC |
| SRR4457258 | 2nd_leaf | DAH28 | 7.40 | HC |
| SRR4457259 | 2nd_leaf | DAH28 | 6.49 | HC |
| SRR4457266 | 2nd_leaf | DAH44 | 9.41 | HC |
| SRR358795 | callus | wt | 12.77 | HC |
| SRR358796 | callus | wt | 13.61 | HC |
| SRR358797 | callus | wt | 14.69 | HC |
| SRR358798 | callus | wt | 14.73 | HC |
| SRR5560729 | caryopsis | wild_type | 11.23 | HC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 4.81 | HC |
| SRR7265400 | coleoptile | 2dA | 10.62 | HC |
| SRR7265401 | coleoptile | 2dA | 7.60 | HC |
| SRR7265402 | coleoptile | 2dA | 6.11 | HC |
| SRR7265406 | coleoptile | 3dA | 5.40 | HC |
| SRR7265407 | coleoptile | 3dA | 4.93 | HC |
| SRR7265410 | coleoptile | 3dN | 4.26 | HC |
| SRR7265412 | coleoptile | 4dA | 5.79 | HC |
| SRR7265413 | coleoptile | 4dA | 7.31 | HC |
| SRR7265414 | coleoptile | 4dA | 5.22 | HC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 6.69 | HC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 7.49 | HC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 4.58 | HC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 8.73 | HC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 6.18 | HC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 6.66 | HC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 4.50 | HC |
| SRR7265373 | embryo | dry seed 0 h | 4.22 | HC |
| SRR7265388 | embryo | 12hA | 8.86 | HC |
| SRR7265389 | embryo | 12hA | 11.10 | HC |
| SRR7265391 | embryo | 12hN | 5.49 | HC |
| SRR7265392 | embryo | 12hN | 8.35 | HC |
| SRR7265393 | embryo | 12hN | 5.95 | HC |
| SRR7265395 | embryo | 24hA | 11.90 | HC |
| SRR7265396 | embryo | 24hA | 9.37 | HC |
| SRR7265399 | embryo | 24hN | 5.08 | HC |
| SRR2338868 | endosprem | high_temperature | 3.23 | HC |
| SRR4457232 | flag_leaf | DAH4 | 6.96 | HC |
| SRR4457233 | flag_leaf | DAH4 | 8.88 | HC |
| SRR4457234 | flag_leaf | DAH12 | 6.43 | HC |
| SRR4457236 | flag_leaf | DAH12 | 4.96 | HC |
| SRR4457237 | flag_leaf | DAH20 | 5.96 | HC |
| SRR4457238 | flag_leaf | DAH20 | 6.77 | HC |
| SRR4457239 | flag_leaf | DAH20 | 4.83 | HC |
| SRR4457241 | flag_leaf | DAH28 | 6.26 | HC |
| SRR4457242 | flag_leaf | DAH28 | 6.73 | HC |
| SRR4457244 | flag_leaf | DAH36 | 6.67 | HC |
| SRR4457245 | flag_leaf | DAH36 | 6.51 | HC |
| SRR4457246 | flag_leaf | DAH44 | 8.84 | HC |
| SRR4457248 | flag_leaf | DAH44 | 8.50 | HC |
| SRR1213690 | flower | wt(flower buds) | 6.43 | HC |
| SRR1213691 | flower | wt | 7.35 | HC |
| SRR8060835 | leaf | wild_type | 4.74 | HC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 5.07 | HC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 5.69 | HC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 9.21 | HC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 7.13 | HC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 6.00 | HC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 5.59 | HC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 6.20 | HC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 5.30 | HC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 5.19 | HC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 4.76 | HC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 7.60 | HC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 6.87 | HC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 6.07 | HC |
| SRR1761789 | leaf | "wild_type,drought,2" | 5.71 | HC |
| SRR1761791 | leaf | "wild_type,control,2" | 11.42 | HC |
| SRR1761781 | leaf | "wild_type,drought,1" | 5.71 | HC |
| SRR1761783 | leaf | "wild_type,control,1" | 11.42 | HC |
| SRR1761529 | leaf | drought | 5.71 | HC |
| SRR1761531 | leaf | control | 11.42 | HC |
| SRR3209770 | leaf | Watered;Long_Day | 5.68 | HC |
| SRR3209774 | leaf | Watered;Short_Day | 4.94 | HC |
| SRR3209776 | leaf | Drought;Short_Day | 5.26 | HC |
| SRR3209777 | leaf | Watered;Long_Day | 3.42 | HC |
| SRR3209779 | leaf | Watered;Short_Day | 3.82 | HC |
| SRR3209780 | leaf | Drought;Short_Day | 5.14 | HC |
| SRR8611901 | leaf | Non-inoculated | 4.03 | HC |
| SRR8611902 | leaf | Non-inoculated | 5.11 | HC |
| SRR6216698 | leaf | nontransgenic rice plant | 11.32 | HC |
| SRR6216699 | leaf | nontransgenic rice plant | 11.53 | HC |
| SRR6502098 | leaf | 100 mM NaCl | 5.27 | HC |
| SRR5856927 | leaf | control | 5.73 | HC |
| SRR5856928 | leaf | control | 9.60 | HC |
| SRR5856929 | leaf | control | 7.64 | HC |
| SRR5856931 | leaf | salt | 4.43 | HC |
| SRR5856932 | leaf | salt | 6.39 | HC |
| SRR5856933 | leaf | control | 5.29 | HC |
| SRR5856934 | leaf | control | 5.69 | HC |
| SRR5856936 | leaf | salt | 5.13 | HC |
| SRR5856937 | leaf | salt | 3.26 | HC |
| SRR5856938 | leaf | salt | 3.60 | HC |
| SRR8582890 | panicle | AM | 3.15 | HC |
| SRR5110431 | panicle | Dawn | 5.84 | HC |
| SRR4947496 | root | control | 12.45 | HC |
| SRR5110433 | panicle | Dawn + 3.5h | 6.70 | HC |
| SRR5110434 | panicle | Dawn + 3.5h | 5.29 | HC |
| SRR5110437 | panicle | Dawn + 7h | 8.79 | HC |
| SRR5110443 | panicle | Dawn + 10.5h | 4.73 | HC |
| SRR5110445 | panicle | Dusk | 9.68 | HC |
| SRR5110446 | panicle | Dusk | 12.88 | HC |
| SRR5110450 | panicle | Dawn + 14h | 8.67 | HC |
| SRR5110451 | panicle | Dawn + 14h | 7.32 | HC |
| SRR5110453 | panicle | Dawn + 17.5h | 8.59 | HC |
| SRR5110454 | panicle | Dawn + 17.5h | 4.66 | HC |
| SRR5110455 | panicle | Dawn + 17.5h | 9.32 | HC |
| SRR5110456 | panicle | Dawn + 17.5h | 7.56 | HC |
| SRR5110457 | panicle | Dawn + 21h | 4.37 | HC |
| SRR5110459 | panicle | Dawn + 21h | 6.46 | HC |
| SRR1633182 | panicle | WT | 9.72 | HC |
| SRR1633185 | panicle | WT | 8.60 | HC |
| SRR5278376 | pistil | "Balilla,S2" | 5.96 | HC |
| SRR5278377 | pistil | "Balilla,S2" | 6.09 | HC |
| SRR5278378 | pistil | "Balilla,S3" | 13.08 | HC |
| SRR5278379 | pistil | "Balilla,S3" | 13.91 | HC |
| SRR5126147 | root | "mock,1_day" | 11.06 | HC |
| SRR5126149 | root | "mock,1_day" | 30.56 | HC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 21.89 | HC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 24.29 | HC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 15.41 | HC |
| SRR5126153 | root | "mock,7_days" | 24.23 | HC |
| SRR5126155 | root | "mock,7_days" | 14.25 | HC |
| SRR5126157 | root | "mock,7_days" | 12.84 | HC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 13.37 | HC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 16.44 | HC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 14.64 | HC |
| SRR5126165 | root | "mock,14_days" | 43.29 | HC |
| SRR5126167 | root | "mock,14_days" | 22.90 | HC |
| SRR5126169 | root | "mock,14_days" | 19.34 | HC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 8.35 | HC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 22.90 | HC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 14.32 | HC |
| SRR3472897 | root | nontransgenic_rice_plant | 10.33 | HC |
| SRR3472900 | root | nontransgenic_rice_plant | 9.32 | HC |
| SRR1213694 | root | wt | 13.75 | HC |
| SRR1213695 | root | wt | 5.33 | HC |
| SRR4947478 | root | control | 19.17 | HC |
| SRR4947479 | root | control | 11.14 | HC |
| SRR4947480 | root | control | 9.46 | HC |
| SRR4947481 | root | control | 8.77 | HC |
| SRR4947482 | root | Al | 40.41 | HC |
| SRR4947483 | root | Al | 19.18 | HC |
| SRR4947484 | root | Al | 21.60 | HC |
| SRR4947485 | root | Al | 20.31 | HC |
| SRR4947487 | root | control | 17.40 | HC |
| SRR4947488 | root | control | 20.28 | HC |
| SRR4947489 | root | control | 18.58 | HC |
| SRR4947490 | root | Al | 21.56 | HC |
| SRR4947491 | root | Al | 15.78 | HC |
| SRR4947492 | root | Al | 12.87 | HC |
| SRR4947493 | root | Al | 7.38 | HC |
| SRR4947494 | root | control | 6.48 | HC |
| SRR4947497 | root | control | 8.09 | HC |
| SRR4947498 | root | Al | 18.40 | HC |
| SRR4947499 | root | Al | 28.36 | HC |
| SRR4947500 | root | Al | 8.66 | HC |
| SRR4947501 | root | Al | 8.00 | HC |
| SRR4947502 | root | control | 12.42 | HC |
| SRR4947503 | root | control | 11.17 | HC |
| SRR4947504 | root | control | 26.92 | HC |
| SRR4947505 | root | control | 24.42 | HC |
| SRR4947506 | root | Al | 10.70 | HC |
| SRR4947507 | root | Al | 8.45 | HC |
| SRR4947508 | root | Al | 16.41 | HC |
| SRR4947509 | root | Al | 7.54 | HC |
| SRR6502091 | root | 100 mM NaCl | 21.37 | HC |
| SRR6502092 | root | 100 mM NaCl | 8.24 | HC |
| SRR6502093 | root | 100 mM NaCl | 8.59 | HC |
| SRR6502094 | root | control | 16.52 | HC |
| SRR6502095 | root | control | 8.18 | HC |
| SRR6502096 | root | control | 24.30 | HC |
| SRR6502103 | root | 100 mM NaCl | 31.50 | HC |
| SRR6502104 | root | 100 mM NaCl | 14.92 | HC |
| SRR6502105 | root | 100 mM NaCl | 5.92 | HC |
| SRR6502106 | root | control | 28.71 | HC |
| SRR6502107 | root | control | 12.96 | HC |
| SRR6502108 | root | control | 33.71 | HC |
| SRR1740436 | root_differentiation_zone | wt | 4.98 | HC |
| SRR1740431 | root_elongation_zone | wt | 6.42 | HC |
| SRR1740428 | root_meristematic_zone | wt | 7.32 | HC |
| SRR1740430 | root_meristematic_zone | wt | 7.68 | HC |
| SRR6441554 | seedling | wild_type | 5.15 | HC |
| SRR6441555 | seedling | wild_type | 3.75 | HC |
| SRR2154086 | seedling | wt | 5.46 | HC |
| SRR2154082 | seedling | wt | 5.92 | HC |
| SRR2154083 | seedling | wt | 5.40 | HC |
| SRR2154085 | seedling | wt | 5.63 | HC |
| SRR3098741 | seedling | wt | 4.02 | HC |
| SRR3098742 | seedling | wt | 5.29 | HC |
| SRR3098743 | seedling | wt | 5.78 | HC |
| SRR2857719 | seedling | drought_stress_0h | 15.78 | HC |
| SRR2857720 | seedling | drought_stress_1h | 7.90 | HC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 5.71 | HC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 7.14 | HC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 6.19 | HC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 4.77 | HC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 4.92 | HC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 4.74 | HC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 4.90 | HC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 3.04 | HC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 3.10 | HC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 15.74 | HC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 15.87 | HC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 9.43 | HC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 9.58 | HC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 12.16 | HC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 14.52 | HC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 12.14 | HC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 10.45 | HC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 9.78 | HC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 10.80 | HC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 9.47 | HC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 16.23 | HC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 13.71 | HC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 12.99 | HC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 19.17 | HC |
| SRR1617549 | shoot_apical_meristem | no collect | 8.92 | HC |
| SRR1617553 | shoot_apical_meristem | no collect | 10.92 | HC |
| SRR1617554 | shoot_apical_meristem | no collect | 16.89 | HC |
| SRR1617556 | shoot_apical_meristem | no collect | 10.83 | HC |
| SRR1617557 | shoot_apical_meristem | no collect | 12.01 | HC |
| SRR1617558 | shoot_apical_meristem | no collect | 11.09 | HC |
| SRR1617559 | shoot_apical_meristem | no collect | 8.84 | HC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 4.18 | HC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 7.05 | HC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 4.07 | HC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 5.46 | HC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 7.74 | HC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 10.01 | HC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 8.42 | HC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 5.23 | HC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 6.08 | HC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 7.81 | HC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 4.33 | HC |