| SRR358795 | callus | wt | 16.58 | HC |
| SRR358796 | callus | wt | 11.24 | HC |
| SRR358798 | callus | wt | 9.81 | HC |
| SRR6320473 | carpel | wt | 7.65 | HC |
| SRR5560727 | caryopsis | wild_type | 25.85 | HC |
| SRR5560728 | caryopsis | wild_type | 19.71 | HC |
| SRR5560729 | caryopsis | wild_type | 23.75 | HC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 9.42 | HC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 7.81 | HC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 6.20 | HC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 5.53 | HC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 13.36 | HC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 18.73 | HC |
| SRR7265373 | embryo | dry seed 0 h | 5.12 | HC |
| SRR7265374 | embryo | dry seed 0 h | 7.67 | HC |
| SRR7265375 | embryo | dry seed 0 h | 2.22 | HC |
| SRR7265376 | embryo | 1hA | 6.18 | HC |
| SRR7265377 | embryo | 1hA | 5.92 | HC |
| SRR7265378 | embryo | 1hA | 6.29 | HC |
| SRR7265379 | embryo | 1hN | 7.10 | HC |
| SRR7265380 | embryo | 1hN | 5.81 | HC |
| SRR7265381 | embryo | 1hN | 5.84 | HC |
| SRR7265385 | embryo | 3hN | 4.68 | HC |
| SRR7265386 | embryo | 3hN | 4.12 | HC |
| SRR7265387 | embryo | 3hN | 5.02 | HC |
| SRR7265391 | embryo | 12hN | 5.79 | HC |
| SRR7265392 | embryo | 12hN | 5.93 | HC |
| SRR7265393 | embryo | 12hN | 5.75 | HC |
| SRR2338866 | endosprem | control | 6.70 | HC |
| SRR2338867 | endosprem | control | 2.61 | HC |
| SRR2338868 | endosprem | high_temperature | 2.76 | HC |
| SRR2338869 | endosprem | high_temperature | 3.33 | HC |
| SRR1213690 | flower | wt(flower buds) | 6.33 | HC |
| SRR1213691 | flower | wt | 4.68 | HC |
| SRR8060835 | leaf | wild_type | 7.15 | HC |
| SRR8060836 | leaf | wild_type | 9.66 | HC |
| SRR8060837 | leaf | wild_type | 8.69 | HC |
| SRR8240824 | leaf | wild_type | 2.83 | HC |
| SRR8240826 | leaf | wild_type | 2.47 | HC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 10.14 | HC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 7.64 | HC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 5.41 | HC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 6.28 | HC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 4.80 | HC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 4.77 | HC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 6.59 | HC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 8.39 | HC |
| SRR1761788 | leaf | "wild_type,drought,2" | 8.57 | HC |
| SRR1761789 | leaf | "wild_type,drought,2" | 7.03 | HC |
| SRR1761790 | leaf | "wild_type,control,2" | 8.59 | HC |
| SRR1761791 | leaf | "wild_type,control,2" | 6.85 | HC |
| SRR1761780 | leaf | "wild_type,drought,1" | 8.57 | HC |
| SRR1761781 | leaf | "wild_type,drought,1" | 7.03 | HC |
| SRR1761782 | leaf | "wild_type,control,1" | 8.59 | HC |
| SRR1761783 | leaf | "wild_type,control,1" | 6.85 | HC |
| SRR1761528 | leaf | drought | 8.57 | HC |
| SRR1761529 | leaf | drought | 7.03 | HC |
| SRR1761530 | leaf | control | 8.59 | HC |
| SRR1761531 | leaf | control | 6.85 | HC |
| SRR6417969 | leaf | H2O_control | 5.10 | HC |
| SRR3209769 | leaf | Watered;Long_Day | 7.77 | HC |
| SRR3209770 | leaf | Watered;Long_Day | 7.44 | HC |
| SRR3209771 | leaf | Drought;Long_Day | 8.01 | HC |
| SRR3209772 | leaf | Drought;Long_Day | 7.66 | HC |
| SRR3209773 | leaf | Watered;Short_Day | 4.35 | HC |
| SRR3209775 | leaf | Drought;Short_Day | 9.76 | HC |
| SRR3209776 | leaf | Drought;Short_Day | 11.43 | HC |
| SRR3209777 | leaf | Watered;Long_Day | 5.70 | HC |
| SRR3209778 | leaf | Drought;Long_Day | 7.85 | HC |
| SRR3209779 | leaf | Watered;Short_Day | 4.77 | HC |
| SRR3209780 | leaf | Drought;Short_Day | 10.33 | HC |
| SRR8611900 | leaf | Non-inoculated | 23.43 | HC |
| SRR8611901 | leaf | Non-inoculated | 22.31 | HC |
| SRR8611902 | leaf | Non-inoculated | 19.95 | HC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 18.13 | HC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 16.36 | HC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 16.64 | HC |
| SRR6216698 | leaf | nontransgenic rice plant | 8.93 | HC |
| SRR6216699 | leaf | nontransgenic rice plant | 11.06 | HC |
| SRR1213692 | leaf | wt | 4.65 | HC |
| SRR1213693 | leaf | wt | 4.91 | HC |
| SRR6502097 | leaf | 100 mM NaCl | 7.09 | HC |
| SRR6502098 | leaf | 100 mM NaCl | 6.10 | HC |
| SRR6502099 | leaf | 100 mM NaCl | 15.24 | HC |
| SRR6502100 | leaf | control | 7.28 | HC |
| SRR6502101 | leaf | control | 6.00 | HC |
| SRR6168973 | leaf | none (control) | 28.78 | HC |
| SRR6168974 | leaf | none (control) | 25.26 | HC |
| SRR6168975 | leaf | none (control) | 25.36 | HC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 35.82 | HC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 5.79 | HC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 30.71 | HC |
| SRR6168979 | leaf | none (control) | 4.78 | HC |
| SRR6168980 | leaf | none (control) | 3.57 | HC |
| SRR6168981 | leaf | none (control) | 9.71 | HC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 17.79 | HC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 27.26 | HC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 21.47 | HC |
| SRR8582888 | panicle | AM | 7.18 | HC |
| SRR8582889 | panicle | AM | 6.90 | HC |
| SRR8582890 | panicle | AM | 8.28 | HC |
| SRR8582891 | panicle | PM | 14.26 | HC |
| SRR8582892 | panicle | PM | 8.29 | HC |
| SRR8582893 | panicle | PM | 20.30 | HC |
| SRR1213696 | endosprem | wt(milk grains) | 3.14 | HC |
| SRR1213697 | endosprem | wt(mature seeds) | 8.07 | HC |
| SRR1633182 | panicle | WT | 94.09 | HC |
| SRR1633185 | panicle | WT | 100.50 | HC |
| SRR5126147 | root | "mock,1_day" | 10.05 | HC |
| SRR5126148 | root | "mock,1_day" | 13.53 | HC |
| SRR5126149 | root | "mock,1_day" | 7.06 | HC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 6.77 | HC |
| SRR5126155 | root | "mock,7_days" | 5.73 | HC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 9.19 | HC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 5.07 | HC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 8.00 | HC |
| SRR3472897 | root | nontransgenic_rice_plant | 5.80 | HC |
| SRR3472900 | root | nontransgenic_rice_plant | 13.36 | HC |
| SRR6502105 | root | 100 mM NaCl | 4.92 | HC |
| SRR1740434 | root_differentiation_zone | wt | 5.34 | HC |
| SRR1740435 | root_differentiation_zone | wt | 6.51 | HC |
| SRR1740436 | root_differentiation_zone | wt | 5.52 | HC |
| SRR1740431 | root_elongation_zone | wt | 16.32 | HC |
| SRR1740432 | root_elongation_zone | wt | 16.75 | HC |
| SRR1740433 | root_elongation_zone | wt | 17.80 | HC |
| SRR1740428 | root_meristematic_zone | wt | 11.60 | HC |
| SRR1740429 | root_meristematic_zone | wt | 11.24 | HC |
| SRR1740430 | root_meristematic_zone | wt | 15.00 | HC |
| SRR6441554 | seedling | wild_type | 9.87 | HC |
| SRR6441555 | seedling | wild_type | 12.82 | HC |
| SRR2154086 | seedling | wt | 11.41 | HC |
| SRR2154085 | seedling | wt | 9.23 | HC |
| SRR2154087 | seedling | wt | 7.12 | HC |
| SRR3098741 | seedling | wt | 6.04 | HC |
| SRR3098742 | seedling | wt | 6.74 | HC |
| SRR3098743 | seedling | wt | 6.64 | HC |
| SRR1944583 | seedling | no_treatment | 13.40 | HC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 6.74 | HC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 8.22 | HC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 6.42 | HC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 14.92 | HC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 10.88 | HC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 14.47 | HC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 5.30 | HC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 10.12 | HC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 9.31 | HC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 12.33 | HC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 16.57 | HC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 15.31 | HC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 12.77 | HC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 13.30 | HC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 13.36 | HC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 15.88 | HC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 27.91 | HC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 26.66 | HC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 13.30 | HC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 21.93 | HC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 27.47 | HC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 8.80 | HC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 5.22 | HC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 4.83 | HC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 5.56 | HC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 8.66 | HC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 7.37 | HC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 7.53 | HC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 9.36 | HC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 5.88 | HC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 6.21 | HC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 5.31 | HC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 3.46 | HC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 5.35 | HC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 2.86 | HC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 3.37 | HC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 5.76 | HC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 5.69 | HC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 8.14 | HC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 6.07 | HC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 4.89 | HC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 10.07 | HC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 9.59 | HC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 11.85 | HC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 31.93 | HC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 14.93 | HC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 19.67 | HC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 10.48 | HC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 17.26 | HC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 9.65 | HC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 16.60 | HC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 14.55 | HC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 10.18 | HC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 9.79 | HC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 9.93 | HC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 12.35 | HC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 15.12 | HC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 14.22 | HC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 11.99 | HC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 11.23 | HC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 20.77 | HC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 14.12 | HC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 15.55 | HC |
| SRR1617553 | shoot_apical_meristem | no collect | 10.36 | HC |
| SRR1617557 | shoot_apical_meristem | no collect | 7.84 | HC |
| SRR1617558 | shoot_apical_meristem | no collect | 8.31 | HC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 98.59 | HC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 103.47 | HC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 129.67 | HC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 64.37 | HC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 77.78 | HC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 62.98 | HC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 51.96 | HC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 42.08 | HC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 57.89 | HC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 5.11 | HC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 19.86 | HC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 13.13 | HC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 15.94 | HC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 32.67 | HC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 37.51 | HC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 9.50 | HC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 7.17 | HC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 48.90 | HC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 27.35 | HC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 35.38 | HC |