| SRR4457251 | 2nd_leaf | DAH4 | 3.75 | HC |
| SRR4457252 | 2nd_leaf | DAH12 | 6.69 | HC |
| SRR4457253 | 2nd_leaf | DAH12 | 7.97 | HC |
| SRR4457254 | 2nd_leaf | DAH12 | 6.77 | HC |
| SRR4457255 | 2nd_leaf | DAH20 | 11.36 | HC |
| SRR4457256 | 2nd_leaf | DAH20 | 10.24 | HC |
| SRR4457257 | 2nd_leaf | DAH20 | 12.95 | HC |
| SRR4457258 | 2nd_leaf | DAH28 | 18.33 | HC |
| SRR4457259 | 2nd_leaf | DAH28 | 15.35 | HC |
| SRR4457260 | 2nd_leaf | DAH28 | 11.12 | HC |
| SRR4457261 | 2nd_leaf | DAH36 | 6.28 | HC |
| SRR4457262 | 2nd_leaf | DAH36 | 7.98 | HC |
| SRR4457264 | 2nd_leaf | DAH44 | 21.62 | HC |
| SRR4457265 | 2nd_leaf | DAH44 | 8.23 | HC |
| SRR4457266 | 2nd_leaf | DAH44 | 20.66 | HC |
| SRR6320473 | carpel | wt | 20.69 | HC |
| SRR6320498 | carpel | wt | 16.57 | HC |
| SRR5560729 | caryopsis | wild_type | 7.79 | HC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 7.71 | HC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 7.41 | HC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 4.73 | HC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 6.88 | HC |
| SRR7265420 | coleoptile | 3dN1dA | 4.20 | HC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 5.89 | HC |
| SRR4457232 | flag_leaf | DAH4 | 4.91 | HC |
| SRR4457233 | flag_leaf | DAH4 | 4.50 | HC |
| SRR4457234 | flag_leaf | DAH12 | 4.86 | HC |
| SRR4457235 | flag_leaf | DAH12 | 3.47 | HC |
| SRR4457239 | flag_leaf | DAH20 | 5.56 | HC |
| SRR4457240 | flag_leaf | DAH28 | 7.07 | HC |
| SRR4457241 | flag_leaf | DAH28 | 6.15 | HC |
| SRR4457242 | flag_leaf | DAH28 | 11.61 | HC |
| SRR4457243 | flag_leaf | DAH36 | 6.83 | HC |
| SRR4457244 | flag_leaf | DAH36 | 6.37 | HC |
| SRR4457245 | flag_leaf | DAH36 | 7.35 | HC |
| SRR4457246 | flag_leaf | DAH44 | 19.17 | HC |
| SRR4457247 | flag_leaf | DAH44 | 12.27 | HC |
| SRR4457248 | flag_leaf | DAH44 | 20.50 | HC |
| SRR1213690 | flower | wt(flower buds) | 4.33 | HC |
| SRR1213691 | flower | wt | 5.31 | HC |
| SRR8060835 | leaf | wild_type | 6.04 | HC |
| SRR8060836 | leaf | wild_type | 9.29 | HC |
| SRR8060837 | leaf | wild_type | 6.90 | HC |
| SRR8240824 | leaf | wild_type | 3.13 | HC |
| SRR8240825 | leaf | wild_type | 2.63 | HC |
| SRR8240819 | leaf | wild_type | 2.94 | HC |
| SRR8240820 | leaf | wild_type | 3.19 | HC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 6.25 | HC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 6.83 | HC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 5.26 | HC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 6.25 | HC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 5.76 | HC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 6.30 | HC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 5.84 | HC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 7.54 | HC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 4.69 | HC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 4.35 | HC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 4.95 | HC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 6.04 | HC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 5.18 | HC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 10.54 | HC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 5.63 | HC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 5.14 | HC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 6.49 | HC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 5.86 | HC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 4.82 | HC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 9.51 | HC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 7.47 | HC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 6.88 | HC |
| SRR1761790 | leaf | "wild_type,control,2" | 6.26 | HC |
| SRR1761782 | leaf | "wild_type,control,1" | 6.26 | HC |
| SRR1761530 | leaf | control | 6.26 | HC |
| SRR504365 | leaf | wt | 13.81 | HC |
| SRR3209769 | leaf | Watered;Long_Day | 3.42 | HC |
| SRR3209777 | leaf | Watered;Long_Day | 4.60 | HC |
| SRR8611900 | leaf | Non-inoculated | 4.16 | HC |
| SRR8611901 | leaf | Non-inoculated | 4.43 | HC |
| SRR8611902 | leaf | Non-inoculated | 4.02 | HC |
| SRR6216698 | leaf | nontransgenic rice plant | 4.74 | HC |
| SRR6216699 | leaf | nontransgenic rice plant | 4.69 | HC |
| SRR1213692 | leaf | wt | 8.43 | HC |
| SRR1213693 | leaf | wt | 5.28 | HC |
| SRR6502085 | leaf | 100 mM NaCl | 5.90 | HC |
| SRR6502086 | leaf | 100 mM NaCl | 6.54 | HC |
| SRR6502087 | leaf | 100 mM NaCl | 8.32 | HC |
| SRR6502088 | leaf | control | 6.23 | HC |
| SRR6502089 | leaf | control | 6.25 | HC |
| SRR6502090 | leaf | control | 6.29 | HC |
| SRR6502097 | leaf | 100 mM NaCl | 6.51 | HC |
| SRR6502098 | leaf | 100 mM NaCl | 8.29 | HC |
| SRR6502100 | leaf | control | 7.86 | HC |
| SRR6502101 | leaf | control | 6.28 | HC |
| SRR6502102 | leaf | control | 5.42 | HC |
| SRR5856928 | leaf | control | 3.38 | HC |
| SRR5856929 | leaf | control | 3.29 | HC |
| SRR5856931 | leaf | salt | 2.21 | HC |
| SRR5856933 | leaf | control | 2.90 | HC |
| SRR5856934 | leaf | control | 2.59 | HC |
| SRR5856935 | leaf | control | 3.73 | HC |
| SRR5856936 | leaf | salt | 3.73 | HC |
| SRR5856937 | leaf | salt | 2.67 | HC |
| SRR5856938 | leaf | salt | 3.14 | HC |
| SRR6168973 | leaf | none (control) | 7.94 | HC |
| SRR6168974 | leaf | none (control) | 5.25 | HC |
| SRR6168975 | leaf | none (control) | 5.72 | HC |
| SRR6168981 | leaf | none (control) | 2.97 | HC |
| SRR8582890 | panicle | AM | 3.34 | HC |
| SRR5110429 | panicle | Dawn | 5.30 | HC |
| SRR5110442 | panicle | Dawn + 10.5h | 5.06 | HC |
| SRR5110443 | panicle | Dawn + 10.5h | 4.05 | HC |
| SRR5110445 | panicle | Dusk | 4.67 | HC |
| SRR5110447 | panicle | Dusk | 4.37 | HC |
| SRR5110450 | panicle | Dawn + 14h | 5.01 | HC |
| SRR5110452 | panicle | Dawn + 14h | 5.84 | HC |
| SRR5110453 | panicle | Dawn + 17.5h | 3.85 | HC |
| SRR5110454 | panicle | Dawn + 17.5h | 4.60 | HC |
| SRR5110455 | panicle | Dawn + 17.5h | 5.20 | HC |
| SRR5110456 | panicle | Dawn + 17.5h | 5.70 | HC |
| SRR5110459 | panicle | Dawn + 21h | 5.06 | HC |
| SRR5110460 | panicle | Dawn + 21h | 5.32 | HC |
| SRR1213696 | endosprem | wt(milk grains) | 2.85 | HC |
| SRR1633182 | panicle | WT | 7.14 | HC |
| SRR1633185 | panicle | WT | 9.13 | HC |
| SRR5278374 | pistil | "Balilla,S1" | 5.95 | HC |
| SRR5278375 | pistil | "Balilla,S1" | 6.83 | HC |
| SRR5278376 | pistil | "Balilla,S2" | 6.76 | HC |
| SRR5278377 | pistil | "Balilla,S2" | 6.74 | HC |
| SRR5278378 | pistil | "Balilla,S3" | 11.72 | HC |
| SRR5278379 | pistil | "Balilla,S3" | 12.08 | HC |
| SRR5126147 | root | "mock,1_day" | 4.69 | HC |
| SRR5126148 | root | "mock,1_day" | 3.89 | HC |
| SRR5126149 | root | "mock,1_day" | 5.23 | HC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 6.62 | HC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 5.36 | HC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 4.39 | HC |
| SRR5126153 | root | "mock,7_days" | 5.97 | HC |
| SRR5126155 | root | "mock,7_days" | 5.85 | HC |
| SRR5126157 | root | "mock,7_days" | 5.64 | HC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 6.54 | HC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 6.56 | HC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 6.34 | HC |
| SRR5126165 | root | "mock,14_days" | 8.21 | HC |
| SRR5126167 | root | "mock,14_days" | 5.73 | HC |
| SRR5126169 | root | "mock,14_days" | 6.39 | HC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 6.45 | HC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 5.45 | HC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 8.89 | HC |
| SRR1213694 | root | wt | 3.44 | HC |
| SRR1213695 | root | wt | 5.75 | HC |
| SRR4947479 | root | control | 4.81 | HC |
| SRR4947481 | root | control | 7.33 | HC |
| SRR4947482 | root | Al | 3.66 | HC |
| SRR4947483 | root | Al | 5.41 | HC |
| SRR4947484 | root | Al | 6.69 | HC |
| SRR4947485 | root | Al | 5.84 | HC |
| SRR4947490 | root | Al | 4.82 | HC |
| SRR4947491 | root | Al | 6.13 | HC |
| SRR4947500 | root | Al | 7.32 | HC |
| SRR4947501 | root | Al | 9.42 | HC |
| SRR4947503 | root | control | 4.95 | HC |
| SRR4947504 | root | control | 5.42 | HC |
| SRR4947506 | root | Al | 4.55 | HC |
| SRR4947507 | root | Al | 6.77 | HC |
| SRR4947508 | root | Al | 5.49 | HC |
| SRR6502091 | root | 100 mM NaCl | 5.32 | HC |
| SRR6502107 | root | control | 4.04 | HC |
| SRR6502108 | root | control | 4.85 | HC |
| SRR6441554 | seedling | wild_type | 4.76 | HC |
| SRR6441555 | seedling | wild_type | 4.65 | HC |
| SRR2154082 | seedling | wt | 6.55 | HC |
| SRR3098741 | seedling | wt | 4.21 | HC |
| SRR3098742 | seedling | wt | 6.00 | HC |
| SRR3098743 | seedling | wt | 4.26 | HC |
| SRR2857719 | seedling | drought_stress_0h | 5.57 | HC |
| SRR2857720 | seedling | drought_stress_1h | 6.57 | HC |
| SRR2857721 | seedling | drought_stress_6h | 3.79 | HC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 8.96 | HC |
| SRR1944583 | seedling | no_treatment | 6.39 | HC |
| SRR358791 | seedling | wt | 11.36 | HC |
| SRR358792 | seedling | wt | 9.01 | HC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 11.71 | HC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 9.94 | HC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 4.80 | HC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 5.32 | HC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 6.00 | HC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 6.12 | HC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 5.31 | HC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 4.97 | HC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 4.96 | HC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 4.89 | HC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 5.02 | HC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 5.00 | HC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 5.74 | HC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 5.65 | HC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 3.94 | HC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 4.64 | HC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 3.73 | HC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 3.65 | HC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 5.18 | HC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 10.04 | HC |