| SRR5560727 | caryopsis | wild_type | 5.65 | HC |
| SRR5560728 | caryopsis | wild_type | 15.76 | HC |
| SRR5560729 | caryopsis | wild_type | 6.55 | HC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 8.77 | HC |
| SRR4947495 | root | control | 10.76 | HC |
| SRR7265406 | coleoptile | 3dA | 5.51 | HC |
| SRR7265407 | coleoptile | 3dA | 5.60 | HC |
| SRR7265412 | coleoptile | 4dA | 3.54 | HC |
| SRR7265414 | coleoptile | 4dA | 6.02 | HC |
| SRR7265418 | coleoptile | 3dN1dA | 8.22 | HC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 27.45 | HC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 10.16 | HC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 12.30 | HC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 9.51 | HC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 19.79 | HC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 14.33 | HC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 22.42 | HC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 9.79 | HC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 24.68 | HC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 9.81 | HC |
| SRR2338866 | endosprem | control | 10.42 | HC |
| SRR2338867 | endosprem | control | 4.49 | HC |
| SRR2338868 | endosprem | high_temperature | 2.75 | HC |
| SRR4457246 | flag_leaf | DAH44 | 5.18 | HC |
| SRR1213690 | flower | wt(flower buds) | 3.89 | HC |
| SRR1213691 | flower | wt | 16.36 | HC |
| SRR8060835 | leaf | wild_type | 6.08 | HC |
| SRR8060836 | leaf | wild_type | 5.51 | HC |
| SRR8060837 | leaf | wild_type | 5.80 | HC |
| SRR8240824 | leaf | wild_type | 3.58 | HC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 10.33 | HC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 11.86 | HC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 13.20 | HC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 8.62 | HC |
| SRR1761790 | leaf | "wild_type,control,2" | 11.30 | HC |
| SRR1761791 | leaf | "wild_type,control,2" | 8.03 | HC |
| SRR1761782 | leaf | "wild_type,control,1" | 11.30 | HC |
| SRR1761783 | leaf | "wild_type,control,1" | 8.03 | HC |
| SRR1761530 | leaf | control | 11.30 | HC |
| SRR1761531 | leaf | control | 8.03 | HC |
| SRR504365 | leaf | wt | 20.19 | HC |
| SRR8611900 | leaf | Non-inoculated | 4.44 | HC |
| SRR8611902 | leaf | Non-inoculated | 8.30 | HC |
| SRR6216698 | leaf | nontransgenic rice plant | 10.12 | HC |
| SRR6216699 | leaf | nontransgenic rice plant | 8.82 | HC |
| SRR6502097 | leaf | 100 mM NaCl | 14.25 | HC |
| SRR6502098 | leaf | 100 mM NaCl | 12.75 | HC |
| SRR6502099 | leaf | 100 mM NaCl | 4.80 | HC |
| SRR6502100 | leaf | control | 6.76 | HC |
| SRR6502101 | leaf | control | 6.25 | HC |
| SRR6502102 | leaf | control | 7.21 | HC |
| SRR5856938 | leaf | salt | 2.11 | HC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 9.07 | HC |
| SRR5110429 | panicle | Dawn | 5.91 | HC |
| SRR5110430 | panicle | Dawn | 9.98 | HC |
| SRR5110432 | panicle | Dawn | 6.06 | HC |
| SRR4947496 | root | control | 5.48 | HC |
| SRR5110434 | panicle | Dawn + 3.5h | 9.23 | HC |
| SRR5110436 | panicle | Dawn + 3.5h | 8.17 | HC |
| SRR5110438 | panicle | Dawn + 7h | 5.67 | HC |
| SRR5110439 | panicle | Dawn + 7h | 7.68 | HC |
| SRR5110443 | panicle | Dawn + 10.5h | 6.48 | HC |
| SRR5110444 | panicle | Dawn + 10.5h | 16.39 | HC |
| SRR5110447 | panicle | Dusk | 6.54 | HC |
| SRR5110448 | panicle | Dusk | 16.57 | HC |
| SRR5110450 | panicle | Dawn + 14h | 12.95 | HC |
| SRR5110451 | panicle | Dawn + 14h | 5.27 | HC |
| SRR5110452 | panicle | Dawn + 14h | 10.04 | HC |
| SRR5110453 | panicle | Dawn + 17.5h | 4.78 | HC |
| SRR5110454 | panicle | Dawn + 17.5h | 8.29 | HC |
| SRR5110458 | panicle | Dawn + 21h | 4.71 | HC |
| SRR5110459 | panicle | Dawn + 21h | 5.35 | HC |
| SRR5110460 | panicle | Dawn + 21h | 7.60 | HC |
| SRR5278376 | pistil | "Balilla,S2" | 5.25 | HC |
| SRR5278378 | pistil | "Balilla,S3" | 12.16 | HC |
| SRR5278379 | pistil | "Balilla,S3" | 12.41 | HC |
| SRR5126147 | root | "mock,1_day" | 5.24 | HC |
| SRR5126149 | root | "mock,1_day" | 6.27 | HC |
| SRR5126153 | root | "mock,7_days" | 6.49 | HC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 8.75 | HC |
| SRR5126165 | root | "mock,14_days" | 8.26 | HC |
| SRR5126167 | root | "mock,14_days" | 4.11 | HC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 5.15 | HC |
| SRR1213694 | root | wt | 5.86 | HC |
| SRR4947478 | root | control | 6.25 | HC |
| SRR4947479 | root | control | 6.82 | HC |
| SRR4947482 | root | Al | 6.98 | HC |
| SRR4947483 | root | Al | 7.86 | HC |
| SRR4947485 | root | Al | 6.23 | HC |
| SRR4947488 | root | control | 6.62 | HC |
| SRR4947489 | root | control | 7.03 | HC |
| SRR4947490 | root | Al | 6.85 | HC |
| SRR4947491 | root | Al | 15.12 | HC |
| SRR4947492 | root | Al | 11.19 | HC |
| SRR4947493 | root | Al | 10.38 | HC |
| SRR4947502 | root | control | 14.56 | HC |
| SRR4947503 | root | control | 6.12 | HC |
| SRR4947504 | root | control | 9.27 | HC |
| SRR4947505 | root | control | 8.27 | HC |
| SRR4947506 | root | Al | 10.84 | HC |
| SRR4947507 | root | Al | 5.77 | HC |
| SRR4947508 | root | Al | 11.51 | HC |
| SRR4947509 | root | Al | 13.20 | HC |
| SRR6502091 | root | 100 mM NaCl | 13.16 | HC |
| SRR6502092 | root | 100 mM NaCl | 16.96 | HC |
| SRR6502096 | root | control | 6.73 | HC |
| SRR6502103 | root | 100 mM NaCl | 10.13 | HC |
| SRR6502104 | root | 100 mM NaCl | 25.23 | HC |
| SRR6502105 | root | 100 mM NaCl | 31.15 | HC |
| SRR6502106 | root | control | 16.79 | HC |
| SRR6502107 | root | control | 13.73 | HC |
| SRR6502108 | root | control | 18.28 | HC |
| SRR1740434 | root_differentiation_zone | wt | 7.11 | HC |
| SRR1740435 | root_differentiation_zone | wt | 7.14 | HC |
| SRR6441554 | seedling | wild_type | 4.03 | HC |
| SRR2154086 | seedling | wt | 6.69 | HC |
| SRR2154082 | seedling | wt | 4.31 | HC |
| SRR2154083 | seedling | wt | 11.16 | HC |
| SRR2154084 | seedling | wt | 6.86 | HC |
| SRR1944583 | seedling | no_treatment | 21.78 | HC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 9.36 | HC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 5.33 | HC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 8.68 | HC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 7.04 | HC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 3.92 | HC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 5.07 | HC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 3.50 | HC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 4.07 | HC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 15.94 | HC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 10.56 | HC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 16.23 | HC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 17.51 | HC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 9.54 | HC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 11.35 | HC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 11.69 | HC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 17.18 | HC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 8.79 | HC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 13.97 | HC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 11.67 | HC |
| SRR1617549 | shoot_apical_meristem | no collect | 22.17 | HC |
| SRR1617554 | shoot_apical_meristem | no collect | 18.78 | HC |
| SRR1617556 | shoot_apical_meristem | no collect | 20.41 | HC |
| SRR1617558 | shoot_apical_meristem | no collect | 15.18 | HC |
| SRR1617559 | shoot_apical_meristem | no collect | 19.31 | HC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 25.26 | HC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 13.90 | HC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 17.05 | HC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 9.95 | HC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 5.17 | HC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 16.53 | HC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 6.15 | HC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 6.57 | HC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 31.95 | HC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 17.22 | HC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 10.79 | HC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 11.64 | HC |