| SRR5560729 | caryopsis | wild_type | 7.46 | HC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 5.25 | HC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 13.07 | HC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 12.01 | HC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 4.46 | HC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 8.31 | HC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 4.19 | HC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 5.06 | HC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 6.64 | HC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 10.19 | HC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 17.67 | HC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 7.82 | HC |
| SRR2338866 | endosprem | control | 5.60 | HC |
| SRR2338867 | endosprem | control | 2.45 | HC |
| SRR8240824 | leaf | wild_type | 2.96 | HC |
| SRR8240818 | leaf | wild_type | 3.17 | HC |
| SRR6502099 | leaf | 100 mM NaCl | 6.02 | HC |
| SRR6168973 | leaf | none (control) | 5.92 | HC |
| SRR6168974 | leaf | none (control) | 8.63 | HC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 7.98 | HC |
| SRR5110453 | panicle | Dawn + 17.5h | 4.27 | HC |
| SRR5110454 | panicle | Dawn + 17.5h | 3.74 | HC |
| SRR5278378 | pistil | "Balilla,S3" | 10.12 | HC |
| SRR5278379 | pistil | "Balilla,S3" | 6.75 | HC |
| SRR5126155 | root | "mock,7_days" | 6.12 | HC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 6.56 | HC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 6.80 | HC |
| SRR5126169 | root | "mock,14_days" | 5.03 | HC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 5.47 | HC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 6.54 | HC |
| SRR3472897 | root | nontransgenic_rice_plant | 3.16 | HC |
| SRR6502092 | root | 100 mM NaCl | 5.76 | HC |
| SRR1740436 | root_differentiation_zone | wt | 7.27 | HC |
| SRR1740432 | root_elongation_zone | wt | 6.41 | HC |
| SRR1740430 | root_meristematic_zone | wt | 7.07 | HC |
| SRR2154086 | seedling | wt | 5.45 | HC |
| SRR2154087 | seedling | wt | 5.08 | HC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 11.82 | HC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 4.53 | HC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 8.61 | HC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 14.13 | HC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 18.66 | HC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 11.27 | HC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 10.18 | HC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 10.60 | HC |
| SRR1617550 | shoot_apical_meristem | no collect | 11.78 | HC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 23.71 | HC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 29.29 | HC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 37.96 | HC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 17.69 | HC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 26.22 | HC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 25.97 | HC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 9.31 | HC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 10.91 | HC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 12.85 | HC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 4.02 | HC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 5.21 | HC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 2.87 | HC |