| SRR6320473 | carpel | wt | 10.80 | HC |
| SRR6320498 | carpel | wt | 8.74 | HC |
| SRR5560727 | caryopsis | wild_type | 13.90 | HC |
| SRR5560728 | caryopsis | wild_type | 67.07 | HC |
| SRR5560729 | caryopsis | wild_type | 50.34 | HC |
| SRR7265400 | coleoptile | 2dA | 175.82 | HC |
| SRR7265401 | coleoptile | 2dA | 13.58 | HC |
| SRR7265402 | coleoptile | 2dA | 14.25 | HC |
| SRR7265403 | coleoptile | 2dN | 4.43 | HC |
| SRR7265404 | coleoptile | 2dN | 46.43 | HC |
| SRR7265405 | coleoptile | 2dN | 27.63 | HC |
| SRR7265406 | coleoptile | 3dA | 92.15 | HC |
| SRR7265407 | coleoptile | 3dA | 8.64 | HC |
| SRR7265412 | coleoptile | 4dA | 45.88 | HC |
| SRR7265413 | coleoptile | 4dA | 21.52 | HC |
| SRR7265414 | coleoptile | 4dA | 17.82 | HC |
| SRR7265418 | coleoptile | 3dN1dA | 5.86 | HC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 70.79 | HC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 107.37 | HC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 52.06 | HC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 42.25 | HC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 109.79 | HC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 59.48 | HC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 99.46 | HC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 11.99 | HC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 103.29 | HC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 162.32 | HC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 138.68 | HC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 136.59 | HC |
| SRR7265373 | embryo | dry seed 0 h | 22.18 | HC |
| SRR7265377 | embryo | 1hA | 3.98 | HC |
| SRR7265378 | embryo | 1hA | 3.85 | HC |
| SRR7265381 | embryo | 1hN | 18.60 | HC |
| SRR7265383 | embryo | 3hA | 6.98 | HC |
| SRR7265385 | embryo | 3hN | 21.74 | HC |
| SRR7265386 | embryo | 3hN | 7.37 | HC |
| SRR7265388 | embryo | 12hA | 12.54 | HC |
| SRR7265389 | embryo | 12hA | 17.62 | HC |
| SRR7265390 | embryo | 12hA | 38.01 | HC |
| SRR7265391 | embryo | 12hN | 15.26 | HC |
| SRR7265392 | embryo | 12hN | 9.14 | HC |
| SRR7265393 | embryo | 12hN | 8.47 | HC |
| SRR7265395 | embryo | 24hA | 185.13 | HC |
| SRR7265396 | embryo | 24hA | 11.43 | HC |
| SRR7265398 | embryo | 24hN | 5.85 | HC |
| SRR7265399 | embryo | 24hN | 5.36 | HC |
| SRR2338866 | endosprem | control | 11.50 | HC |
| SRR2338867 | endosprem | control | 17.68 | HC |
| SRR2338868 | endosprem | high_temperature | 39.23 | HC |
| SRR2338869 | endosprem | high_temperature | 25.73 | HC |
| SRR976168 | flag_leaf | wild_type | 14.66 | HC |
| SRR1213690 | flower | wt(flower buds) | 69.37 | HC |
| SRR1213691 | flower | wt | 65.39 | HC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 8.84 | HC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 4.54 | HC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 7.28 | HC |
| SRR6216698 | leaf | nontransgenic rice plant | 32.69 | HC |
| SRR6216699 | leaf | nontransgenic rice plant | 34.01 | HC |
| SRR6502099 | leaf | 100 mM NaCl | 6.20 | HC |
| SRR5856930 | leaf | salt | 3.02 | HC |
| SRR6168973 | leaf | none (control) | 4.83 | HC |
| SRR6168974 | leaf | none (control) | 5.53 | HC |
| SRR6168980 | leaf | none (control) | 2.77 | HC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 3.75 | HC |
| SRR5110429 | panicle | Dawn | 30.18 | HC |
| SRR5110430 | panicle | Dawn | 24.56 | HC |
| SRR5110431 | panicle | Dawn | 19.62 | HC |
| SRR5110432 | panicle | Dawn | 21.93 | HC |
| SRR5110433 | panicle | Dawn + 3.5h | 20.16 | HC |
| SRR5110434 | panicle | Dawn + 3.5h | 18.06 | HC |
| SRR5110435 | panicle | Dawn + 3.5h | 15.90 | HC |
| SRR5110436 | panicle | Dawn + 3.5h | 20.17 | HC |
| SRR5110437 | panicle | Dawn + 7h | 47.10 | HC |
| SRR5110438 | panicle | Dawn + 7h | 27.73 | HC |
| SRR5110439 | panicle | Dawn + 7h | 15.36 | HC |
| SRR5110440 | panicle | Dawn + 7h | 51.89 | HC |
| SRR5110441 | panicle | Dawn + 10.5h | 22.47 | HC |
| SRR5110442 | panicle | Dawn + 10.5h | 38.45 | HC |
| SRR5110443 | panicle | Dawn + 10.5h | 34.30 | HC |
| SRR5110444 | panicle | Dawn + 10.5h | 45.28 | HC |
| SRR5110445 | panicle | Dusk | 53.73 | HC |
| SRR5110446 | panicle | Dusk | 55.07 | HC |
| SRR5110447 | panicle | Dusk | 43.23 | HC |
| SRR5110448 | panicle | Dusk | 69.45 | HC |
| SRR5110449 | panicle | Dawn + 14h | 52.51 | HC |
| SRR5110450 | panicle | Dawn + 14h | 24.04 | HC |
| SRR5110451 | panicle | Dawn + 14h | 37.47 | HC |
| SRR5110452 | panicle | Dawn + 14h | 30.36 | HC |
| SRR5110453 | panicle | Dawn + 17.5h | 17.44 | HC |
| SRR5110454 | panicle | Dawn + 17.5h | 17.36 | HC |
| SRR5110455 | panicle | Dawn + 17.5h | 17.34 | HC |
| SRR5110456 | panicle | Dawn + 17.5h | 25.68 | HC |
| SRR5110457 | panicle | Dawn + 21h | 22.98 | HC |
| SRR5110458 | panicle | Dawn + 21h | 17.09 | HC |
| SRR5110459 | panicle | Dawn + 21h | 20.09 | HC |
| SRR5110460 | panicle | Dawn + 21h | 17.32 | HC |
| SRR1213696 | endosprem | wt(milk grains) | 21.00 | HC |
| SRR1213697 | endosprem | wt(mature seeds) | 8.65 | HC |
| SRR1633182 | panicle | WT | 142.54 | HC |
| SRR1633185 | panicle | WT | 300.12 | HC |
| SRR5278374 | pistil | "Balilla,S1" | 14.52 | HC |
| SRR5278375 | pistil | "Balilla,S1" | 16.06 | HC |
| SRR5278376 | pistil | "Balilla,S2" | 21.34 | HC |
| SRR5278377 | pistil | "Balilla,S2" | 22.21 | HC |
| SRR5278378 | pistil | "Balilla,S3" | 37.74 | HC |
| SRR5278379 | pistil | "Balilla,S3" | 22.93 | HC |
| SRR5126153 | root | "mock,7_days" | 10.19 | HC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 16.17 | HC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 5.15 | HC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 11.25 | HC |
| SRR3472897 | root | nontransgenic_rice_plant | 6.16 | HC |
| SRR3472900 | root | nontransgenic_rice_plant | 6.06 | HC |
| SRR4947478 | root | control | 4.87 | HC |
| SRR4947480 | root | control | 5.37 | HC |
| SRR4947481 | root | control | 5.94 | HC |
| SRR4947483 | root | Al | 6.22 | HC |
| SRR4947489 | root | control | 9.88 | HC |
| SRR4947491 | root | Al | 5.53 | HC |
| SRR4947498 | root | Al | 7.84 | HC |
| SRR4947499 | root | Al | 5.07 | HC |
| SRR4947502 | root | control | 10.04 | HC |
| SRR4947505 | root | control | 6.00 | HC |
| SRR4947506 | root | Al | 5.32 | HC |
| SRR4947507 | root | Al | 11.16 | HC |
| SRR4947508 | root | Al | 6.01 | HC |
| SRR6502091 | root | 100 mM NaCl | 6.15 | HC |
| SRR6502092 | root | 100 mM NaCl | 5.66 | HC |
| SRR6502105 | root | 100 mM NaCl | 7.95 | HC |
| SRR6502108 | root | control | 6.41 | HC |
| SRR6441554 | seedling | wild_type | 4.68 | HC |
| SRR2154086 | seedling | wt | 21.30 | HC |
| SRR2154082 | seedling | wt | 10.30 | HC |
| SRR2154083 | seedling | wt | 13.84 | HC |
| SRR2154084 | seedling | wt | 14.30 | HC |
| SRR2154085 | seedling | wt | 6.09 | HC |
| SRR2154087 | seedling | wt | 19.79 | HC |
| SRR2857719 | seedling | drought_stress_0h | 50.42 | HC |
| SRR2857720 | seedling | drought_stress_1h | 5.90 | HC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 13.08 | HC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 4.67 | HC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 4.07 | HC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 3.64 | HC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 4.34 | HC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 6.60 | HC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 6.38 | HC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 4.49 | HC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 3.07 | HC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 96.38 | HC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 125.62 | HC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 100.76 | HC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 25.91 | HC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 76.56 | HC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 77.06 | HC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 93.24 | HC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 82.41 | HC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 98.35 | HC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 93.35 | HC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 104.43 | HC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 101.60 | HC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 124.48 | HC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 93.55 | HC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 107.05 | HC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 69.32 | HC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 149.35 | HC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 158.64 | HC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 69.83 | HC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 79.10 | HC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 83.90 | HC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 82.75 | HC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 143.94 | HC |
| SRR1617549 | shoot_apical_meristem | no collect | 51.24 | HC |
| SRR1617550 | shoot_apical_meristem | no collect | 21.90 | HC |
| SRR1617554 | shoot_apical_meristem | no collect | 65.00 | HC |
| SRR1617557 | shoot_apical_meristem | no collect | 38.84 | HC |
| SRR1617558 | shoot_apical_meristem | no collect | 42.00 | HC |
| SRR1617559 | shoot_apical_meristem | no collect | 58.42 | HC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 47.85 | HC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 55.68 | HC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 53.29 | HC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 98.44 | HC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 109.60 | HC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 103.80 | HC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 31.26 | HC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 51.96 | HC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 43.46 | HC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 96.17 | HC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 115.04 | HC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 80.65 | HC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 90.96 | HC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 146.29 | HC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 145.00 | HC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 91.20 | HC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 134.12 | HC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 78.54 | HC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 106.96 | HC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 86.73 | HC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 101.97 | HC |