| SRR358795 | callus | wt | 26.15 | HC |
| SRR358796 | callus | wt | 19.80 | HC |
| SRR358797 | callus | wt | 15.30 | HC |
| SRR358798 | callus | wt | 18.33 | HC |
| SRR6320473 | carpel | wt | 14.54 | HC |
| SRR6320498 | carpel | wt | 25.10 | HC |
| SRR5560727 | caryopsis | wild_type | 26.79 | HC |
| SRR5560728 | caryopsis | wild_type | 50.83 | HC |
| SRR5560729 | caryopsis | wild_type | 37.39 | HC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 42.31 | HC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 53.62 | HC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 44.73 | HC |
| SRR4947495 | root | control | 379.90 | HC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 42.84 | HC |
| SRR7265400 | coleoptile | 2dA | 48.19 | HC |
| SRR7265401 | coleoptile | 2dA | 44.29 | HC |
| SRR7265402 | coleoptile | 2dA | 49.40 | HC |
| SRR7265403 | coleoptile | 2dN | 19.00 | HC |
| SRR7265404 | coleoptile | 2dN | 16.40 | HC |
| SRR7265405 | coleoptile | 2dN | 20.73 | HC |
| SRR7265406 | coleoptile | 3dA | 77.25 | HC |
| SRR7265407 | coleoptile | 3dA | 79.36 | HC |
| SRR7265408 | coleoptile | 3dA | 48.50 | HC |
| SRR7265409 | coleoptile | 3dN | 30.59 | HC |
| SRR7265410 | coleoptile | 3dN | 36.18 | HC |
| SRR7265411 | coleoptile | 3dN | 37.74 | HC |
| SRR7265412 | coleoptile | 4dA | 8.17 | HC |
| SRR7265413 | coleoptile | 4dA | 18.86 | HC |
| SRR7265414 | coleoptile | 4dA | 17.67 | HC |
| SRR7265415 | coleoptile | 4dN | 9.33 | HC |
| SRR7265416 | coleoptile | 4dN | 13.97 | HC |
| SRR7265417 | coleoptile | 4dN | 11.39 | HC |
| SRR7265418 | coleoptile | 3dN1dA | 21.54 | HC |
| SRR7265419 | coleoptile | 3dN1dA | 29.93 | HC |
| SRR7265420 | coleoptile | 3dN1dA | 30.02 | HC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 360.53 | HC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 266.46 | HC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 157.77 | HC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 69.57 | HC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 270.86 | HC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 143.38 | HC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 328.72 | HC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 56.30 | HC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 202.68 | HC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 264.43 | HC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 238.18 | HC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 315.65 | HC |
| SRR7265388 | embryo | 12hA | 16.59 | HC |
| SRR7265389 | embryo | 12hA | 12.76 | HC |
| SRR7265390 | embryo | 12hA | 16.38 | HC |
| SRR7265391 | embryo | 12hN | 5.92 | HC |
| SRR7265392 | embryo | 12hN | 8.82 | HC |
| SRR7265393 | embryo | 12hN | 7.59 | HC |
| SRR7265394 | embryo | 24hA | 37.80 | HC |
| SRR7265395 | embryo | 24hA | 29.24 | HC |
| SRR7265396 | embryo | 24hA | 35.97 | HC |
| SRR7265397 | embryo | 24hN | 16.47 | HC |
| SRR7265398 | embryo | 24hN | 14.75 | HC |
| SRR7265399 | embryo | 24hN | 19.36 | HC |
| SRR2338866 | endosprem | control | 8.22 | HC |
| SRR2338867 | endosprem | control | 2.80 | HC |
| SRR2338869 | endosprem | high_temperature | 3.68 | HC |
| SRR976168 | flag_leaf | wild_type | 10.78 | HC |
| SRR1213690 | flower | wt(flower buds) | 36.35 | HC |
| SRR1213691 | flower | wt | 23.24 | HC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 47.54 | HC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 25.77 | HC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 19.49 | HC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 17.32 | HC |
| SRR3209777 | leaf | Watered;Long_Day | 19.53 | HC |
| SRR3209779 | leaf | Watered;Short_Day | 10.53 | HC |
| SRR6216698 | leaf | nontransgenic rice plant | 75.21 | HC |
| SRR6216699 | leaf | nontransgenic rice plant | 98.31 | HC |
| SRR5856927 | leaf | control | 49.14 | HC |
| SRR5856928 | leaf | control | 54.96 | HC |
| SRR5856929 | leaf | control | 55.47 | HC |
| SRR5856930 | leaf | salt | 21.27 | HC |
| SRR5856931 | leaf | salt | 13.82 | HC |
| SRR5856932 | leaf | salt | 21.01 | HC |
| SRR5856933 | leaf | control | 73.44 | HC |
| SRR5856934 | leaf | control | 82.64 | HC |
| SRR5856935 | leaf | control | 63.36 | HC |
| SRR5856936 | leaf | salt | 19.58 | HC |
| SRR5856937 | leaf | salt | 25.83 | HC |
| SRR5856938 | leaf | salt | 35.69 | HC |
| SRR6053394 | leaf | ethanol solvent (untreated control) | 10.79 | HC |
| SRR6053396 | leaf | gibberellic acid (GA) | 16.26 | HC |
| SRR6053397 | leaf | gibberellic acid (GA) | 14.15 | HC |
| SRR6053398 | leaf | Paclobutrazol (PB) | 13.66 | HC |
| SRR6053399 | leaf | Paclobutrazol (PB) | 8.16 | HC |
| SRR6053400 | leaf | Paclobutrazol (PB) | 15.42 | HC |
| SRR6168973 | leaf | none (control) | 215.75 | HC |
| SRR6168974 | leaf | none (control) | 160.52 | HC |
| SRR6168975 | leaf | none (control) | 44.94 | HC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 342.80 | HC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 4.41 | HC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 187.44 | HC |
| SRR6168980 | leaf | none (control) | 8.81 | HC |
| SRR6168981 | leaf | none (control) | 39.78 | HC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 78.26 | HC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 69.17 | HC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 151.30 | HC |
| SRR8582889 | panicle | AM | 1.76 | HC |
| SRR5110429 | panicle | Dawn | 49.24 | HC |
| SRR5110430 | panicle | Dawn | 67.84 | HC |
| SRR5110431 | panicle | Dawn | 50.86 | HC |
| SRR5110432 | panicle | Dawn | 64.36 | HC |
| SRR4947496 | root | control | 453.55 | HC |
| SRR5110433 | panicle | Dawn + 3.5h | 85.44 | HC |
| SRR5110434 | panicle | Dawn + 3.5h | 50.72 | HC |
| SRR5110435 | panicle | Dawn + 3.5h | 76.58 | HC |
| SRR5110436 | panicle | Dawn + 3.5h | 31.85 | HC |
| SRR5110437 | panicle | Dawn + 7h | 77.18 | HC |
| SRR5110438 | panicle | Dawn + 7h | 45.51 | HC |
| SRR5110439 | panicle | Dawn + 7h | 68.26 | HC |
| SRR5110440 | panicle | Dawn + 7h | 46.87 | HC |
| SRR5110441 | panicle | Dawn + 10.5h | 25.53 | HC |
| SRR5110442 | panicle | Dawn + 10.5h | 32.33 | HC |
| SRR5110443 | panicle | Dawn + 10.5h | 30.00 | HC |
| SRR5110444 | panicle | Dawn + 10.5h | 33.89 | HC |
| SRR5110445 | panicle | Dusk | 31.77 | HC |
| SRR5110446 | panicle | Dusk | 77.94 | HC |
| SRR5110447 | panicle | Dusk | 79.01 | HC |
| SRR5110448 | panicle | Dusk | 77.76 | HC |
| SRR5110449 | panicle | Dawn + 14h | 65.70 | HC |
| SRR5110450 | panicle | Dawn + 14h | 28.05 | HC |
| SRR5110451 | panicle | Dawn + 14h | 50.70 | HC |
| SRR5110452 | panicle | Dawn + 14h | 71.32 | HC |
| SRR5110453 | panicle | Dawn + 17.5h | 43.76 | HC |
| SRR5110454 | panicle | Dawn + 17.5h | 50.59 | HC |
| SRR5110455 | panicle | Dawn + 17.5h | 43.36 | HC |
| SRR5110456 | panicle | Dawn + 17.5h | 69.26 | HC |
| SRR5110457 | panicle | Dawn + 21h | 36.14 | HC |
| SRR5110458 | panicle | Dawn + 21h | 58.59 | HC |
| SRR5110459 | panicle | Dawn + 21h | 64.91 | HC |
| SRR5110460 | panicle | Dawn + 21h | 44.47 | HC |
| SRR1213696 | endosprem | wt(milk grains) | 8.46 | HC |
| SRR1633182 | panicle | WT | 5.52 | HC |
| SRR1633185 | panicle | WT | 17.48 | HC |
| SRR5278374 | pistil | "Balilla,S1" | 100.67 | HC |
| SRR5278375 | pistil | "Balilla,S1" | 87.43 | HC |
| SRR5278376 | pistil | "Balilla,S2" | 116.70 | HC |
| SRR5278377 | pistil | "Balilla,S2" | 112.05 | HC |
| SRR5278378 | pistil | "Balilla,S3" | 79.41 | HC |
| SRR5278379 | pistil | "Balilla,S3" | 81.39 | HC |
| SRR5126147 | root | "mock,1_day" | 61.68 | HC |
| SRR5126148 | root | "mock,1_day" | 134.03 | HC |
| SRR5126149 | root | "mock,1_day" | 55.00 | HC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 13.99 | HC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 5.37 | HC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 33.19 | HC |
| SRR5126153 | root | "mock,7_days" | 97.75 | HC |
| SRR5126155 | root | "mock,7_days" | 115.16 | HC |
| SRR5126157 | root | "mock,7_days" | 82.64 | HC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 37.84 | HC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 42.76 | HC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 66.32 | HC |
| SRR5126165 | root | "mock,14_days" | 58.05 | HC |
| SRR5126167 | root | "mock,14_days" | 49.81 | HC |
| SRR5126169 | root | "mock,14_days" | 127.38 | HC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 81.33 | HC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 48.53 | HC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 57.97 | HC |
| SRR3472897 | root | nontransgenic_rice_plant | 85.97 | HC |
| SRR3472900 | root | nontransgenic_rice_plant | 51.22 | HC |
| SRR1213694 | root | wt | 43.21 | HC |
| SRR4947478 | root | control | 387.56 | HC |
| SRR4947479 | root | control | 323.02 | HC |
| SRR4947480 | root | control | 408.03 | HC |
| SRR4947481 | root | control | 504.85 | HC |
| SRR4947482 | root | Al | 108.58 | HC |
| SRR4947483 | root | Al | 168.88 | HC |
| SRR4947484 | root | Al | 444.70 | HC |
| SRR4947485 | root | Al | 200.59 | HC |
| SRR4947487 | root | control | 388.03 | HC |
| SRR4947488 | root | control | 430.09 | HC |
| SRR4947489 | root | control | 410.16 | HC |
| SRR4947490 | root | Al | 327.85 | HC |
| SRR4947491 | root | Al | 296.74 | HC |
| SRR4947492 | root | Al | 353.50 | HC |
| SRR4947493 | root | Al | 329.53 | HC |
| SRR4947494 | root | control | 349.88 | HC |
| SRR4947497 | root | control | 314.79 | HC |
| SRR4947498 | root | Al | 197.47 | HC |
| SRR4947499 | root | Al | 246.71 | HC |
| SRR4947500 | root | Al | 280.01 | HC |
| SRR4947501 | root | Al | 233.37 | HC |
| SRR4947502 | root | control | 205.04 | HC |
| SRR4947503 | root | control | 260.86 | HC |
| SRR4947504 | root | control | 398.59 | HC |
| SRR4947505 | root | control | 387.29 | HC |
| SRR4947506 | root | Al | 169.00 | HC |
| SRR4947507 | root | Al | 139.81 | HC |
| SRR4947508 | root | Al | 235.66 | HC |
| SRR4947509 | root | Al | 259.18 | HC |
| SRR6502091 | root | 100 mM NaCl | 22.09 | HC |
| SRR6502092 | root | 100 mM NaCl | 39.03 | HC |
| SRR6502093 | root | 100 mM NaCl | 26.37 | HC |
| SRR6502094 | root | control | 48.79 | HC |
| SRR6502095 | root | control | 43.21 | HC |
| SRR6502096 | root | control | 43.89 | HC |
| SRR6502103 | root | 100 mM NaCl | 29.32 | HC |
| SRR6502104 | root | 100 mM NaCl | 25.89 | HC |
| SRR6502105 | root | 100 mM NaCl | 49.65 | HC |
| SRR6502106 | root | control | 30.10 | HC |
| SRR6502107 | root | control | 37.75 | HC |
| SRR6502108 | root | control | 48.33 | HC |
| SRR1740434 | root_differentiation_zone | wt | 128.72 | HC |
| SRR1740435 | root_differentiation_zone | wt | 831.61 | HC |
| SRR1740436 | root_differentiation_zone | wt | 1065.37 | HC |
| SRR1740431 | root_elongation_zone | wt | 461.59 | HC |
| SRR1740432 | root_elongation_zone | wt | 253.53 | HC |
| SRR1740433 | root_elongation_zone | wt | 419.17 | HC |
| SRR1740428 | root_meristematic_zone | wt | 106.05 | HC |
| SRR1740429 | root_meristematic_zone | wt | 45.07 | HC |
| SRR1740430 | root_meristematic_zone | wt | 65.46 | HC |
| SRR6441554 | seedling | wild_type | 21.79 | HC |
| SRR6441555 | seedling | wild_type | 13.12 | HC |
| SRR2154086 | seedling | wt | 26.72 | HC |
| SRR2154082 | seedling | wt | 49.08 | HC |
| SRR2154083 | seedling | wt | 40.31 | HC |
| SRR2154084 | seedling | wt | 36.70 | HC |
| SRR2154085 | seedling | wt | 22.41 | HC |
| SRR2154087 | seedling | wt | 14.86 | HC |
| SRR3098741 | seedling | wt | 19.81 | HC |
| SRR3098742 | seedling | wt | 28.20 | HC |
| SRR3098743 | seedling | wt | 40.99 | HC |
| SRR2857721 | seedling | drought_stress_6h | 4.54 | HC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 6.67 | HC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 80.35 | HC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 52.79 | HC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 20.49 | HC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 36.30 | HC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 20.22 | HC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 23.56 | HC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 28.35 | HC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 17.66 | HC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 41.28 | HC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 22.47 | HC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 9.71 | HC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 4.04 | HC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 7.29 | HC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 4.41 | HC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 7.69 | HC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 7.27 | HC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 9.85 | HC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 11.18 | HC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 8.38 | HC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 4.70 | HC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 3.74 | HC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 4.06 | HC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 15.13 | HC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 10.61 | HC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 6.06 | HC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 29.76 | HC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 33.26 | HC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 30.85 | HC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 15.54 | HC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 32.41 | HC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 29.61 | HC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 26.72 | HC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 34.55 | HC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 37.08 | HC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 31.20 | HC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 27.69 | HC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 23.63 | HC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 28.35 | HC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 23.71 | HC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 23.20 | HC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 24.34 | HC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 27.78 | HC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 27.22 | HC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 24.07 | HC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 20.84 | HC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 25.71 | HC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 21.53 | HC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 21.54 | HC |
| SRR1617549 | shoot_apical_meristem | no collect | 32.45 | HC |
| SRR1617550 | shoot_apical_meristem | no collect | 28.89 | HC |
| SRR1617553 | shoot_apical_meristem | no collect | 73.53 | HC |
| SRR1617554 | shoot_apical_meristem | no collect | 82.99 | HC |
| SRR1617556 | shoot_apical_meristem | no collect | 63.67 | HC |
| SRR1617557 | shoot_apical_meristem | no collect | 95.37 | HC |
| SRR1617558 | shoot_apical_meristem | no collect | 73.86 | HC |
| SRR1617559 | shoot_apical_meristem | no collect | 79.03 | HC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 28.61 | HC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 37.07 | HC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 44.49 | HC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 132.13 | HC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 148.46 | HC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 181.19 | HC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 222.39 | HC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 177.41 | HC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 240.05 | HC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 30.52 | HC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 25.79 | HC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 17.93 | HC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 22.23 | HC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 21.49 | HC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 13.03 | HC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 29.19 | HC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 26.40 | HC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 19.29 | HC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 30.48 | HC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 30.83 | HC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 16.65 | HC |