| SRR6320473 | carpel | wt | 24.13 | HC |
| SRR6320498 | carpel | wt | 10.89 | HC |
| SRR5560727 | caryopsis | wild_type | 8.67 | HC |
| SRR5560728 | caryopsis | wild_type | 8.83 | HC |
| SRR5560729 | caryopsis | wild_type | 9.17 | HC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 13.77 | HC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 10.39 | HC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 13.82 | HC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 12.03 | HC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 10.48 | HC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 14.33 | HC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 13.04 | HC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 9.38 | HC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 11.44 | HC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 8.67 | HC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 8.18 | HC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 8.54 | HC |
| SRR2338867 | endosprem | control | 2.57 | HC |
| SRR8060835 | leaf | wild_type | 16.56 | HC |
| SRR8060836 | leaf | wild_type | 11.54 | HC |
| SRR8060837 | leaf | wild_type | 15.32 | HC |
| SRR8240824 | leaf | wild_type | 5.31 | HC |
| SRR8240825 | leaf | wild_type | 12.34 | HC |
| SRR8240826 | leaf | wild_type | 3.89 | HC |
| SRR8240818 | leaf | wild_type | 6.80 | HC |
| SRR8240819 | leaf | wild_type | 7.82 | HC |
| SRR8240820 | leaf | wild_type | 6.95 | HC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 6.46 | HC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 5.60 | HC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 5.69 | HC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 7.71 | HC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 5.23 | HC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 4.21 | HC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 4.19 | HC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 9.87 | HC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 5.46 | HC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 3.70 | HC |
| SRR1761788 | leaf | "wild_type,drought,2" | 6.22 | HC |
| SRR1761789 | leaf | "wild_type,drought,2" | 12.37 | HC |
| SRR1761780 | leaf | "wild_type,drought,1" | 6.22 | HC |
| SRR1761781 | leaf | "wild_type,drought,1" | 12.37 | HC |
| SRR1761528 | leaf | drought | 6.22 | HC |
| SRR1761529 | leaf | drought | 12.37 | HC |
| SRR504365 | leaf | wt | 4.56 | HC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 5.56 | HC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 4.15 | HC |
| SRR3209772 | leaf | Drought;Long_Day | 4.65 | HC |
| SRR3209773 | leaf | Watered;Short_Day | 3.57 | HC |
| SRR3209775 | leaf | Drought;Short_Day | 5.05 | HC |
| SRR3209776 | leaf | Drought;Short_Day | 8.32 | HC |
| SRR3209778 | leaf | Drought;Long_Day | 5.46 | HC |
| SRR3209779 | leaf | Watered;Short_Day | 4.10 | HC |
| SRR3209780 | leaf | Drought;Short_Day | 8.33 | HC |
| SRR8611900 | leaf | Non-inoculated | 19.89 | HC |
| SRR8611901 | leaf | Non-inoculated | 17.22 | HC |
| SRR8611902 | leaf | Non-inoculated | 25.87 | HC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 113.18 | HC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 111.98 | HC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 106.90 | HC |
| SRR6216698 | leaf | nontransgenic rice plant | 4.42 | HC |
| SRR6216699 | leaf | nontransgenic rice plant | 5.70 | HC |
| SRR6502085 | leaf | 100 mM NaCl | 15.38 | HC |
| SRR6502086 | leaf | 100 mM NaCl | 9.69 | HC |
| SRR6502087 | leaf | 100 mM NaCl | 7.56 | HC |
| SRR6502088 | leaf | control | 8.03 | HC |
| SRR6502089 | leaf | control | 5.47 | HC |
| SRR6502090 | leaf | control | 8.52 | HC |
| SRR6502097 | leaf | 100 mM NaCl | 7.72 | HC |
| SRR6502101 | leaf | control | 4.93 | HC |
| SRR6502102 | leaf | control | 5.93 | HC |
| SRR5856927 | leaf | control | 8.88 | HC |
| SRR5856928 | leaf | control | 5.71 | HC |
| SRR5856929 | leaf | control | 6.38 | HC |
| SRR5856930 | leaf | salt | 11.24 | HC |
| SRR5856931 | leaf | salt | 7.89 | HC |
| SRR5856932 | leaf | salt | 11.00 | HC |
| SRR5856933 | leaf | control | 4.39 | HC |
| SRR5856934 | leaf | control | 5.05 | HC |
| SRR5856935 | leaf | control | 5.16 | HC |
| SRR5856936 | leaf | salt | 8.24 | HC |
| SRR5856937 | leaf | salt | 6.85 | HC |
| SRR5856938 | leaf | salt | 9.88 | HC |
| SRR6053399 | leaf | Paclobutrazol (PB) | 12.08 | HC |
| SRR6168973 | leaf | none (control) | 16.68 | HC |
| SRR6168974 | leaf | none (control) | 8.81 | HC |
| SRR6168975 | leaf | none (control) | 18.71 | HC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 21.48 | HC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 3.86 | HC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 19.57 | HC |
| SRR6168979 | leaf | none (control) | 44.65 | HC |
| SRR6168980 | leaf | none (control) | 28.81 | HC |
| SRR6168981 | leaf | none (control) | 50.09 | HC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 33.00 | HC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 66.21 | HC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 59.37 | HC |
| SRR8582889 | panicle | AM | 1.91 | HC |
| SRR8582891 | panicle | PM | 10.54 | HC |
| SRR8582893 | panicle | PM | 25.81 | HC |
| SRR4947496 | root | control | 8.93 | HC |
| SRR5110433 | panicle | Dawn + 3.5h | 7.54 | HC |
| SRR5110434 | panicle | Dawn + 3.5h | 7.87 | HC |
| SRR5110435 | panicle | Dawn + 3.5h | 3.38 | HC |
| SRR5110437 | panicle | Dawn + 7h | 4.96 | HC |
| SRR5110442 | panicle | Dawn + 10.5h | 6.79 | HC |
| SRR5110447 | panicle | Dusk | 4.79 | HC |
| SRR5110450 | panicle | Dawn + 14h | 6.70 | HC |
| SRR5110451 | panicle | Dawn + 14h | 4.65 | HC |
| SRR5110453 | panicle | Dawn + 17.5h | 5.43 | HC |
| SRR5110455 | panicle | Dawn + 17.5h | 4.72 | HC |
| SRR5110458 | panicle | Dawn + 21h | 5.57 | HC |
| SRR5278374 | pistil | "Balilla,S1" | 18.33 | HC |
| SRR5278375 | pistil | "Balilla,S1" | 12.49 | HC |
| SRR5278376 | pistil | "Balilla,S2" | 15.44 | HC |
| SRR5278377 | pistil | "Balilla,S2" | 15.10 | HC |
| SRR5278378 | pistil | "Balilla,S3" | 10.47 | HC |
| SRR5278379 | pistil | "Balilla,S3" | 15.37 | HC |
| SRR5126147 | root | "mock,1_day" | 4.51 | HC |
| SRR5126148 | root | "mock,1_day" | 5.99 | HC |
| SRR5126149 | root | "mock,1_day" | 6.52 | HC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 8.94 | HC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 8.53 | HC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 7.50 | HC |
| SRR5126153 | root | "mock,7_days" | 7.88 | HC |
| SRR5126155 | root | "mock,7_days" | 16.42 | HC |
| SRR5126157 | root | "mock,7_days" | 23.33 | HC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 19.26 | HC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 19.54 | HC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 18.91 | HC |
| SRR5126165 | root | "mock,14_days" | 12.04 | HC |
| SRR5126167 | root | "mock,14_days" | 12.02 | HC |
| SRR5126169 | root | "mock,14_days" | 15.00 | HC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 19.79 | HC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 16.18 | HC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 27.56 | HC |
| SRR3472897 | root | nontransgenic_rice_plant | 4.83 | HC |
| SRR3472900 | root | nontransgenic_rice_plant | 6.57 | HC |
| SRR4947480 | root | control | 7.39 | HC |
| SRR4947481 | root | control | 9.54 | HC |
| SRR4947482 | root | Al | 4.90 | HC |
| SRR4947483 | root | Al | 5.30 | HC |
| SRR4947484 | root | Al | 6.49 | HC |
| SRR4947485 | root | Al | 5.12 | HC |
| SRR4947487 | root | control | 6.21 | HC |
| SRR4947488 | root | control | 5.55 | HC |
| SRR4947489 | root | control | 7.83 | HC |
| SRR4947493 | root | Al | 5.90 | HC |
| SRR4947502 | root | control | 5.98 | HC |
| SRR4947505 | root | control | 8.34 | HC |
| SRR4947506 | root | Al | 7.53 | HC |
| SRR6502091 | root | 100 mM NaCl | 12.56 | HC |
| SRR6502092 | root | 100 mM NaCl | 16.30 | HC |
| SRR6502093 | root | 100 mM NaCl | 12.04 | HC |
| SRR6502094 | root | control | 16.38 | HC |
| SRR6502095 | root | control | 11.02 | HC |
| SRR6502096 | root | control | 8.69 | HC |
| SRR6502103 | root | 100 mM NaCl | 7.74 | HC |
| SRR6502104 | root | 100 mM NaCl | 9.98 | HC |
| SRR6502105 | root | 100 mM NaCl | 15.73 | HC |
| SRR6502106 | root | control | 10.97 | HC |
| SRR6502107 | root | control | 7.00 | HC |
| SRR1740434 | root_differentiation_zone | wt | 5.07 | HC |
| SRR1740431 | root_elongation_zone | wt | 4.83 | HC |
| SRR1740430 | root_meristematic_zone | wt | 4.76 | HC |
| SRR6441554 | seedling | wild_type | 4.41 | HC |
| SRR6441555 | seedling | wild_type | 13.41 | HC |
| SRR3098741 | seedling | wt | 6.27 | HC |
| SRR3098742 | seedling | wt | 5.68 | HC |
| SRR3098743 | seedling | wt | 14.15 | HC |
| SRR2857719 | seedling | drought_stress_0h | 5.18 | HC |
| SRR2857720 | seedling | drought_stress_1h | 7.97 | HC |
| SRR2857721 | seedling | drought_stress_6h | 14.65 | HC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 13.59 | HC |
| SRR1944583 | seedling | no_treatment | 5.44 | HC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 10.75 | HC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 16.16 | HC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 12.66 | HC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 4.28 | HC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 5.08 | HC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 4.16 | HC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 4.61 | HC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 3.75 | HC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 5.10 | HC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 4.02 | HC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 5.33 | HC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 4.91 | HC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 6.97 | HC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 6.15 | HC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 3.41 | HC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 2.60 | HC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 5.84 | HC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 5.12 | HC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 7.08 | HC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 6.47 | HC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 3.85 | HC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 4.42 | HC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 5.92 | HC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 4.41 | HC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 2.69 | HC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 3.17 | HC |