| SRR4457249 | 2nd_leaf | DAH4 | 17.75 | HC |
| SRR4457250 | 2nd_leaf | DAH4 | 25.01 | HC |
| SRR4457251 | 2nd_leaf | DAH4 | 12.21 | HC |
| SRR4457263 | 2nd_leaf | DAH36 | 5.26 | HC |
| SRR6320473 | carpel | wt | 7.62 | HC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 36.69 | HC |
| SRR7265400 | coleoptile | 2dA | 16.63 | HC |
| SRR7265401 | coleoptile | 2dA | 22.46 | HC |
| SRR7265403 | coleoptile | 2dN | 18.19 | HC |
| SRR7265404 | coleoptile | 2dN | 18.64 | HC |
| SRR7265405 | coleoptile | 2dN | 16.67 | HC |
| SRR7265406 | coleoptile | 3dA | 34.78 | HC |
| SRR7265407 | coleoptile | 3dA | 6.27 | HC |
| SRR7265408 | coleoptile | 3dA | 13.75 | HC |
| SRR7265409 | coleoptile | 3dN | 5.06 | HC |
| SRR7265410 | coleoptile | 3dN | 9.26 | HC |
| SRR7265411 | coleoptile | 3dN | 12.02 | HC |
| SRR7265412 | coleoptile | 4dA | 42.48 | HC |
| SRR7265413 | coleoptile | 4dA | 64.52 | HC |
| SRR7265414 | coleoptile | 4dA | 73.88 | HC |
| SRR7265416 | coleoptile | 4dN | 10.79 | HC |
| SRR7265417 | coleoptile | 4dN | 7.63 | HC |
| SRR7265418 | coleoptile | 3dN1dA | 18.90 | HC |
| SRR7265419 | coleoptile | 3dN1dA | 32.55 | HC |
| SRR7265420 | coleoptile | 3dN1dA | 46.14 | HC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 27.40 | HC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 13.40 | HC |
| SRR7265378 | embryo | 1hA | 3.30 | HC |
| SRR7265384 | embryo | 3hA | 5.50 | HC |
| SRR7265387 | embryo | 3hN | 6.31 | HC |
| SRR7265389 | embryo | 12hA | 11.02 | HC |
| SRR7265390 | embryo | 12hA | 12.27 | HC |
| SRR7265391 | embryo | 12hN | 16.26 | HC |
| SRR7265392 | embryo | 12hN | 21.78 | HC |
| SRR7265395 | embryo | 24hA | 5.94 | HC |
| SRR7265396 | embryo | 24hA | 12.93 | HC |
| SRR7265397 | embryo | 24hN | 12.92 | HC |
| SRR7265398 | embryo | 24hN | 18.37 | HC |
| SRR7265399 | embryo | 24hN | 27.06 | HC |
| SRR4457231 | flag_leaf | DAH4 | 16.32 | HC |
| SRR4457232 | flag_leaf | DAH4 | 11.73 | HC |
| SRR4457233 | flag_leaf | DAH4 | 12.11 | HC |
| SRR4457243 | flag_leaf | DAH36 | 21.17 | HC |
| SRR4457244 | flag_leaf | DAH36 | 19.37 | HC |
| SRR4457245 | flag_leaf | DAH36 | 6.46 | HC |
| SRR1213691 | flower | wt | 29.66 | HC |
| SRR8060836 | leaf | wild_type | 7.21 | HC |
| SRR8240824 | leaf | wild_type | 4.12 | HC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 73.54 | HC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 68.56 | HC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 211.44 | HC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 130.15 | HC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 94.34 | HC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 18.03 | HC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 42.32 | HC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 8.50 | HC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 24.98 | HC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 29.63 | HC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 13.29 | HC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 58.80 | HC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 10.30 | HC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 76.43 | HC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 13.93 | HC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 6.63 | HC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 11.02 | HC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 12.89 | HC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 216.04 | HC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 8.17 | HC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 140.30 | HC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 21.95 | HC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 41.33 | HC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 15.40 | HC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 18.43 | HC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 6.32 | HC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 34.32 | HC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 19.27 | HC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 28.62 | HC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 20.90 | HC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 79.11 | HC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 8.09 | HC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 13.55 | HC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 10.66 | HC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 209.15 | HC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 15.74 | HC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 38.80 | HC |
| SRR6417967 | leaf | H2O_control | 14.64 | HC |
| SRR6417968 | leaf | H2O_control | 82.41 | HC |
| SRR6417969 | leaf | H2O_control | 42.14 | HC |
| SRR3209770 | leaf | Watered;Long_Day | 47.27 | HC |
| SRR6216698 | leaf | nontransgenic rice plant | 6.47 | HC |
| SRR6216699 | leaf | nontransgenic rice plant | 3.69 | HC |
| SRR1213692 | leaf | wt | 98.57 | HC |
| SRR1213693 | leaf | wt | 23.17 | HC |
| SRR5856927 | leaf | control | 3.42 | HC |
| SRR5856928 | leaf | control | 3.95 | HC |
| SRR5856929 | leaf | control | 7.02 | HC |
| SRR5856930 | leaf | salt | 3.87 | HC |
| SRR5856932 | leaf | salt | 4.49 | HC |
| SRR5856933 | leaf | control | 2.69 | HC |
| SRR5856934 | leaf | control | 5.56 | HC |
| SRR5856936 | leaf | salt | 2.27 | HC |
| SRR5856937 | leaf | salt | 2.39 | HC |
| SRR5856938 | leaf | salt | 9.31 | HC |
| SRR6053392 | leaf | ethanol solvent (untreated control) | 29.92 | HC |
| SRR6053393 | leaf | ethanol solvent (untreated control) | 26.82 | HC |
| SRR6053394 | leaf | ethanol solvent (untreated control) | 8.78 | HC |
| SRR6053396 | leaf | gibberellic acid (GA) | 10.88 | HC |
| SRR6053397 | leaf | gibberellic acid (GA) | 15.29 | HC |
| SRR6053400 | leaf | Paclobutrazol (PB) | 28.77 | HC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 45.41 | HC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 2.99 | HC |
| SRR6168979 | leaf | none (control) | 22.91 | HC |
| SRR6168980 | leaf | none (control) | 14.27 | HC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 3.03 | HC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 28.29 | HC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 52.23 | HC |
| SRR5110430 | panicle | Dawn | 11.72 | HC |
| SRR1213696 | endosprem | wt(milk grains) | 8.42 | HC |
| SRR1213697 | endosprem | wt(mature seeds) | 6.43 | HC |
| SRR5278375 | pistil | "Balilla,S1" | 29.35 | HC |
| SRR5278379 | pistil | "Balilla,S3" | 8.07 | HC |
| SRR5126153 | root | "mock,7_days" | 18.07 | HC |
| SRR5126155 | root | "mock,7_days" | 24.52 | HC |
| SRR5126157 | root | "mock,7_days" | 23.46 | HC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 22.19 | HC |
| SRR5126165 | root | "mock,14_days" | 10.62 | HC |
| SRR5126167 | root | "mock,14_days" | 33.01 | HC |
| SRR5126169 | root | "mock,14_days" | 8.66 | HC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 13.12 | HC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 7.29 | HC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 10.78 | HC |
| SRR3472897 | root | nontransgenic_rice_plant | 4.45 | HC |
| SRR3472900 | root | nontransgenic_rice_plant | 9.37 | HC |
| SRR1213694 | root | wt | 24.40 | HC |
| SRR1213695 | root | wt | 6.31 | HC |
| SRR4947503 | root | control | 6.86 | HC |
| SRR4947508 | root | Al | 5.80 | HC |
| SRR6502107 | root | control | 22.46 | HC |
| SRR3098741 | seedling | wt | 9.14 | HC |
| SRR3098742 | seedling | wt | 16.70 | HC |
| SRR3098743 | seedling | wt | 10.36 | HC |
| SRR358794 | seedling | wt | 91.37 | HC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 12.09 | HC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 11.20 | HC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 14.14 | HC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 10.28 | HC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 40.53 | HC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 45.97 | HC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 4.09 | HC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 12.36 | HC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 45.90 | HC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 15.17 | HC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 4.62 | HC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 5.32 | HC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 5.44 | HC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 8.96 | HC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 3.99 | HC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 2.81 | HC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 4.53 | HC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 9.58 | HC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 12.30 | HC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 8.90 | HC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 25.17 | HC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 20.37 | HC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 7.99 | HC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 4.73 | HC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 25.54 | HC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 31.33 | HC |