| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 7.19 | HC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 6.57 | HC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 4.54 | HC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 5.26 | HC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 6.86 | HC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 6.30 | HC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 3.99 | HC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 6.95 | HC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 5.37 | HC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 7.04 | HC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 5.43 | HC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 6.65 | HC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 10.83 | HC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 8.05 | HC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 9.29 | HC |
| SRR8060836 | leaf | wild_type | 4.81 | HC |
| SRR8240824 | leaf | wild_type | 6.74 | HC |
| SRR8240825 | leaf | wild_type | 4.17 | HC |
| SRR8240826 | leaf | wild_type | 3.20 | HC |
| SRR8240818 | leaf | wild_type | 3.26 | HC |
| SRR8240819 | leaf | wild_type | 3.11 | HC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 9.76 | HC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 5.28 | HC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 8.55 | HC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 6.61 | HC |
| SRR6216698 | leaf | nontransgenic rice plant | 5.23 | HC |
| SRR6216699 | leaf | nontransgenic rice plant | 6.21 | HC |
| SRR5856927 | leaf | control | 2.47 | HC |
| SRR5856933 | leaf | control | 3.30 | HC |
| SRR5856934 | leaf | control | 2.47 | HC |
| SRR5278375 | pistil | "Balilla,S1" | 3.76 | HC |
| SRR5278376 | pistil | "Balilla,S2" | 4.74 | HC |
| SRR5278379 | pistil | "Balilla,S3" | 10.89 | HC |
| SRR5126147 | root | "mock,1_day" | 16.02 | HC |
| SRR5126148 | root | "mock,1_day" | 20.23 | HC |
| SRR5126149 | root | "mock,1_day" | 12.22 | HC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 16.95 | HC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 13.26 | HC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 12.61 | HC |
| SRR5126153 | root | "mock,7_days" | 6.82 | HC |
| SRR5126155 | root | "mock,7_days" | 11.02 | HC |
| SRR5126157 | root | "mock,7_days" | 6.42 | HC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 12.58 | HC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 10.93 | HC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 14.12 | HC |
| SRR5126165 | root | "mock,14_days" | 12.11 | HC |
| SRR5126167 | root | "mock,14_days" | 8.31 | HC |
| SRR5126169 | root | "mock,14_days" | 8.02 | HC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 11.95 | HC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 13.17 | HC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 8.62 | HC |
| SRR3472897 | root | nontransgenic_rice_plant | 7.01 | HC |
| SRR3472900 | root | nontransgenic_rice_plant | 6.94 | HC |
| SRR6502091 | root | 100 mM NaCl | 6.59 | HC |
| SRR6502092 | root | 100 mM NaCl | 6.32 | HC |
| SRR6502093 | root | 100 mM NaCl | 5.84 | HC |
| SRR6502094 | root | control | 5.74 | HC |
| SRR6502095 | root | control | 7.76 | HC |
| SRR6502096 | root | control | 6.45 | HC |
| SRR6502105 | root | 100 mM NaCl | 8.79 | HC |
| SRR6502108 | root | control | 6.87 | HC |
| SRR1740432 | root_elongation_zone | wt | 5.46 | HC |
| SRR1740433 | root_elongation_zone | wt | 4.82 | HC |
| SRR1740430 | root_meristematic_zone | wt | 4.96 | HC |
| SRR3098741 | seedling | wt | 2.92 | HC |
| SRR3098742 | seedling | wt | 3.97 | HC |
| SRR3098743 | seedling | wt | 3.58 | HC |
| SRR2857719 | seedling | drought_stress_0h | 6.77 | HC |
| SRR2857720 | seedling | drought_stress_1h | 5.85 | HC |
| SRR2857721 | seedling | drought_stress_6h | 3.84 | HC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 3.77 | HC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 3.17 | HC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 4.39 | HC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 4.97 | HC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 5.54 | HC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 5.17 | HC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 6.65 | HC |