| SRR4457249 | 2nd_leaf | DAH4 | 7.15 | HC |
| SRR4457250 | 2nd_leaf | DAH4 | 6.61 | HC |
| SRR4457251 | 2nd_leaf | DAH4 | 7.34 | HC |
| SRR4457252 | 2nd_leaf | DAH12 | 6.83 | HC |
| SRR4457253 | 2nd_leaf | DAH12 | 7.10 | HC |
| SRR4457254 | 2nd_leaf | DAH12 | 6.52 | HC |
| SRR4457255 | 2nd_leaf | DAH20 | 6.50 | HC |
| SRR4457256 | 2nd_leaf | DAH20 | 5.47 | HC |
| SRR4457257 | 2nd_leaf | DAH20 | 6.91 | HC |
| SRR4457258 | 2nd_leaf | DAH28 | 5.07 | HC |
| SRR4457259 | 2nd_leaf | DAH28 | 4.97 | HC |
| SRR4457260 | 2nd_leaf | DAH28 | 4.60 | HC |
| SRR4457261 | 2nd_leaf | DAH36 | 7.51 | HC |
| SRR4457262 | 2nd_leaf | DAH36 | 9.13 | HC |
| SRR5560727 | caryopsis | wild_type | 6.32 | HC |
| SRR5560728 | caryopsis | wild_type | 7.12 | HC |
| SRR5560729 | caryopsis | wild_type | 10.31 | HC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 6.34 | HC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 7.05 | HC |
| SRR4947495 | root | control | 6.85 | HC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 5.06 | HC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 5.60 | HC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 7.58 | HC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 4.97 | HC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 4.32 | HC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 7.89 | HC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 4.65 | HC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 4.71 | HC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 4.60 | HC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 7.92 | HC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 6.11 | HC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 7.04 | HC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 6.30 | HC |
| SRR2338867 | endosprem | control | 3.20 | HC |
| SRR2338868 | endosprem | high_temperature | 3.57 | HC |
| SRR2338869 | endosprem | high_temperature | 3.83 | HC |
| SRR4457231 | flag_leaf | DAH4 | 4.94 | HC |
| SRR4457232 | flag_leaf | DAH4 | 5.28 | HC |
| SRR4457233 | flag_leaf | DAH4 | 5.99 | HC |
| SRR4457234 | flag_leaf | DAH12 | 4.99 | HC |
| SRR4457235 | flag_leaf | DAH12 | 4.88 | HC |
| SRR4457236 | flag_leaf | DAH12 | 5.23 | HC |
| SRR4457237 | flag_leaf | DAH20 | 5.15 | HC |
| SRR4457238 | flag_leaf | DAH20 | 5.19 | HC |
| SRR4457239 | flag_leaf | DAH20 | 4.64 | HC |
| SRR4457242 | flag_leaf | DAH28 | 4.25 | HC |
| SRR4457243 | flag_leaf | DAH36 | 6.96 | HC |
| SRR4457244 | flag_leaf | DAH36 | 6.57 | HC |
| SRR4457245 | flag_leaf | DAH36 | 7.87 | HC |
| SRR4457246 | flag_leaf | DAH44 | 4.91 | HC |
| SRR1213690 | flower | wt(flower buds) | 4.59 | HC |
| SRR1213691 | flower | wt | 5.16 | HC |
| SRR8060836 | leaf | wild_type | 3.84 | HC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 4.59 | HC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 4.94 | HC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 5.95 | HC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 6.94 | HC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 7.21 | HC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 8.69 | HC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 5.81 | HC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 6.70 | HC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 6.97 | HC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 5.99 | HC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 6.73 | HC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 5.68 | HC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 6.50 | HC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 6.64 | HC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 5.83 | HC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 5.78 | HC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 6.08 | HC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 6.21 | HC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 7.48 | HC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 5.52 | HC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 8.50 | HC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 7.86 | HC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 6.48 | HC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 6.00 | HC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 5.10 | HC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 5.78 | HC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 6.16 | HC |
| SRR504365 | leaf | wt | 5.76 | HC |
| SRR3209771 | leaf | Drought;Long_Day | 4.67 | HC |
| SRR3209778 | leaf | Drought;Long_Day | 4.78 | HC |
| SRR8611900 | leaf | Non-inoculated | 4.08 | HC |
| SRR8611901 | leaf | Non-inoculated | 3.82 | HC |
| SRR6216698 | leaf | nontransgenic rice plant | 5.02 | HC |
| SRR6216699 | leaf | nontransgenic rice plant | 5.35 | HC |
| SRR1213693 | leaf | wt | 4.84 | HC |
| SRR6502085 | leaf | 100 mM NaCl | 4.56 | HC |
| SRR6502098 | leaf | 100 mM NaCl | 5.14 | HC |
| SRR5856938 | leaf | salt | 1.94 | HC |
| SRR8582893 | panicle | PM | 4.94 | HC |
| SRR5110429 | panicle | Dawn | 6.58 | HC |
| SRR5110431 | panicle | Dawn | 6.96 | HC |
| SRR5110432 | panicle | Dawn | 4.84 | HC |
| SRR4947496 | root | control | 6.21 | HC |
| SRR5110435 | panicle | Dawn + 3.5h | 4.14 | HC |
| SRR5110436 | panicle | Dawn + 3.5h | 5.41 | HC |
| SRR5110438 | panicle | Dawn + 7h | 4.98 | HC |
| SRR5110440 | panicle | Dawn + 7h | 6.52 | HC |
| SRR5110442 | panicle | Dawn + 10.5h | 5.45 | HC |
| SRR5110444 | panicle | Dawn + 10.5h | 6.71 | HC |
| SRR5110445 | panicle | Dusk | 5.48 | HC |
| SRR5110446 | panicle | Dusk | 6.35 | HC |
| SRR5110447 | panicle | Dusk | 4.50 | HC |
| SRR5110448 | panicle | Dusk | 6.96 | HC |
| SRR5110449 | panicle | Dawn + 14h | 6.46 | HC |
| SRR5110450 | panicle | Dawn + 14h | 5.07 | HC |
| SRR5110451 | panicle | Dawn + 14h | 5.41 | HC |
| SRR5110452 | panicle | Dawn + 14h | 6.79 | HC |
| SRR5110453 | panicle | Dawn + 17.5h | 4.38 | HC |
| SRR5110454 | panicle | Dawn + 17.5h | 4.61 | HC |
| SRR5110456 | panicle | Dawn + 17.5h | 5.66 | HC |
| SRR5110457 | panicle | Dawn + 21h | 4.18 | HC |
| SRR5110458 | panicle | Dawn + 21h | 3.83 | HC |
| SRR5110459 | panicle | Dawn + 21h | 5.08 | HC |
| SRR5110460 | panicle | Dawn + 21h | 7.59 | HC |
| SRR1213696 | endosprem | wt(milk grains) | 2.37 | HC |
| SRR5278378 | pistil | "Balilla,S3" | 10.05 | HC |
| SRR5278379 | pistil | "Balilla,S3" | 9.38 | HC |
| SRR5126147 | root | "mock,1_day" | 9.28 | HC |
| SRR5126148 | root | "mock,1_day" | 8.09 | HC |
| SRR5126149 | root | "mock,1_day" | 9.04 | HC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 11.80 | HC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 10.52 | HC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 7.59 | HC |
| SRR5126153 | root | "mock,7_days" | 8.36 | HC |
| SRR5126155 | root | "mock,7_days" | 10.88 | HC |
| SRR5126157 | root | "mock,7_days" | 12.91 | HC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 10.11 | HC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 10.20 | HC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 12.18 | HC |
| SRR5126165 | root | "mock,14_days" | 10.01 | HC |
| SRR5126167 | root | "mock,14_days" | 6.49 | HC |
| SRR5126169 | root | "mock,14_days" | 10.76 | HC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 9.25 | HC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 9.96 | HC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 11.30 | HC |
| SRR1213695 | root | wt | 6.21 | HC |
| SRR4947478 | root | control | 5.36 | HC |
| SRR4947480 | root | control | 8.78 | HC |
| SRR4947481 | root | control | 10.32 | HC |
| SRR4947482 | root | Al | 4.24 | HC |
| SRR4947483 | root | Al | 5.34 | HC |
| SRR4947484 | root | Al | 7.32 | HC |
| SRR4947485 | root | Al | 6.97 | HC |
| SRR4947487 | root | control | 5.39 | HC |
| SRR4947488 | root | control | 7.07 | HC |
| SRR4947489 | root | control | 6.75 | HC |
| SRR4947490 | root | Al | 5.28 | HC |
| SRR4947491 | root | Al | 7.40 | HC |
| SRR4947492 | root | Al | 8.92 | HC |
| SRR4947493 | root | Al | 7.34 | HC |
| SRR4947497 | root | control | 7.90 | HC |
| SRR4947498 | root | Al | 8.35 | HC |
| SRR4947499 | root | Al | 6.89 | HC |
| SRR4947500 | root | Al | 9.91 | HC |
| SRR4947501 | root | Al | 11.69 | HC |
| SRR4947502 | root | control | 7.94 | HC |
| SRR4947503 | root | control | 7.69 | HC |
| SRR4947504 | root | control | 10.06 | HC |
| SRR4947505 | root | control | 9.68 | HC |
| SRR4947506 | root | Al | 5.18 | HC |
| SRR4947507 | root | Al | 9.80 | HC |
| SRR4947508 | root | Al | 7.81 | HC |
| SRR4947509 | root | Al | 8.12 | HC |
| SRR6502091 | root | 100 mM NaCl | 8.75 | HC |
| SRR6502092 | root | 100 mM NaCl | 7.85 | HC |
| SRR6502093 | root | 100 mM NaCl | 9.98 | HC |
| SRR6502094 | root | control | 7.99 | HC |
| SRR6502095 | root | control | 8.28 | HC |
| SRR6502096 | root | control | 7.20 | HC |
| SRR6502103 | root | 100 mM NaCl | 8.12 | HC |
| SRR6502104 | root | 100 mM NaCl | 8.39 | HC |
| SRR6502105 | root | 100 mM NaCl | 10.26 | HC |
| SRR6502106 | root | control | 6.97 | HC |
| SRR6502107 | root | control | 7.96 | HC |
| SRR6502108 | root | control | 7.11 | HC |
| SRR1740436 | root_differentiation_zone | wt | 3.80 | HC |
| SRR1740432 | root_elongation_zone | wt | 5.77 | HC |
| SRR1740433 | root_elongation_zone | wt | 5.73 | HC |
| SRR1740430 | root_meristematic_zone | wt | 3.97 | HC |
| SRR2154086 | seedling | wt | 4.68 | HC |
| SRR2154082 | seedling | wt | 4.23 | HC |
| SRR2154083 | seedling | wt | 3.96 | HC |
| SRR2154084 | seedling | wt | 4.40 | HC |
| SRR2154087 | seedling | wt | 5.83 | HC |
| SRR3098741 | seedling | wt | 3.26 | HC |
| SRR3098742 | seedling | wt | 3.36 | HC |
| SRR3098743 | seedling | wt | 3.14 | HC |
| SRR2857719 | seedling | drought_stress_0h | 7.03 | HC |
| SRR2857720 | seedling | drought_stress_1h | 5.51 | HC |
| SRR2857721 | seedling | drought_stress_6h | 3.32 | HC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 4.36 | HC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 9.53 | HC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 6.24 | HC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 3.44 | HC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 4.11 | HC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 4.42 | HC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 4.53 | HC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 3.07 | HC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 2.86 | HC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 8.64 | HC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 8.76 | HC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 8.33 | HC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 9.53 | HC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 8.47 | HC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 8.00 | HC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 10.02 | HC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 9.88 | HC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 12.26 | HC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 9.17 | HC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 5.53 | HC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 4.79 | HC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 5.84 | HC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 4.76 | HC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 5.55 | HC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 5.07 | HC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 5.10 | HC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 5.78 | HC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 5.27 | HC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 4.90 | HC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 5.82 | HC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 4.42 | HC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 4.68 | HC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 5.06 | HC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 4.08 | HC |