| SRR4457250 | 2nd_leaf | DAH4 | 17.87 | HC |
| SRR4457253 | 2nd_leaf | DAH12 | 11.43 | HC |
| SRR4457255 | 2nd_leaf | DAH20 | 5.63 | HC |
| SRR4457263 | 2nd_leaf | DAH36 | 9.26 | HC |
| SRR4457266 | 2nd_leaf | DAH44 | 10.73 | HC |
| SRR3745125 | anther | wt | 10.56 | HC |
| SRR3745126 | anther | wt | 7.18 | HC |
| SRR3745127 | anther | wt | 10.50 | HC |
| SRR358795 | callus | wt | 26.44 | HC |
| SRR358796 | callus | wt | 26.66 | HC |
| SRR358797 | callus | wt | 23.71 | HC |
| SRR358798 | callus | wt | 23.95 | HC |
| SRR6320473 | carpel | wt | 15.10 | HC |
| SRR7265400 | coleoptile | 2dA | 4.67 | HC |
| SRR7265403 | coleoptile | 2dN | 7.38 | HC |
| SRR7265404 | coleoptile | 2dN | 5.17 | HC |
| SRR7265405 | coleoptile | 2dN | 30.53 | HC |
| SRR7265406 | coleoptile | 3dA | 3.65 | HC |
| SRR7265408 | coleoptile | 3dA | 7.35 | HC |
| SRR7265409 | coleoptile | 3dN | 8.38 | HC |
| SRR7265410 | coleoptile | 3dN | 6.59 | HC |
| SRR7265411 | coleoptile | 3dN | 8.49 | HC |
| SRR7265412 | coleoptile | 4dA | 12.16 | HC |
| SRR7265413 | coleoptile | 4dA | 18.45 | HC |
| SRR7265415 | coleoptile | 4dN | 38.10 | HC |
| SRR7265416 | coleoptile | 4dN | 19.25 | HC |
| SRR7265417 | coleoptile | 4dN | 6.08 | HC |
| SRR7265418 | coleoptile | 3dN1dA | 7.31 | HC |
| SRR7265375 | embryo | dry seed 0 h | 2.25 | HC |
| SRR7265376 | embryo | 1hA | 6.50 | HC |
| SRR7265377 | embryo | 1hA | 7.92 | HC |
| SRR7265378 | embryo | 1hA | 10.57 | HC |
| SRR7265379 | embryo | 1hN | 4.70 | HC |
| SRR7265380 | embryo | 1hN | 14.30 | HC |
| SRR7265381 | embryo | 1hN | 15.36 | HC |
| SRR7265382 | embryo | 3hA | 16.59 | HC |
| SRR7265383 | embryo | 3hA | 13.04 | HC |
| SRR7265384 | embryo | 3hA | 5.49 | HC |
| SRR7265385 | embryo | 3hN | 11.37 | HC |
| SRR7265386 | embryo | 3hN | 4.80 | HC |
| SRR7265387 | embryo | 3hN | 4.08 | HC |
| SRR7265388 | embryo | 12hA | 6.29 | HC |
| SRR7265389 | embryo | 12hA | 5.14 | HC |
| SRR7265390 | embryo | 12hA | 4.66 | HC |
| SRR7265392 | embryo | 12hN | 7.82 | HC |
| SRR7265393 | embryo | 12hN | 13.47 | HC |
| SRR7265394 | embryo | 24hA | 12.26 | HC |
| SRR7265395 | embryo | 24hA | 7.36 | HC |
| SRR7265396 | embryo | 24hA | 5.79 | HC |
| SRR7265397 | embryo | 24hN | 34.75 | HC |
| SRR7265398 | embryo | 24hN | 28.44 | HC |
| SRR7265399 | embryo | 24hN | 7.48 | HC |
| SRR976168 | flag_leaf | wild_type | 8.27 | HC |
| SRR4457232 | flag_leaf | DAH4 | 7.55 | HC |
| SRR4457233 | flag_leaf | DAH4 | 4.27 | HC |
| SRR4457234 | flag_leaf | DAH12 | 12.27 | HC |
| SRR4457235 | flag_leaf | DAH12 | 11.67 | HC |
| SRR4457236 | flag_leaf | DAH12 | 7.80 | HC |
| SRR4457237 | flag_leaf | DAH20 | 9.11 | HC |
| SRR4457238 | flag_leaf | DAH20 | 4.42 | HC |
| SRR4457239 | flag_leaf | DAH20 | 5.19 | HC |
| SRR4457240 | flag_leaf | DAH28 | 15.73 | HC |
| SRR4457241 | flag_leaf | DAH28 | 5.67 | HC |
| SRR4457242 | flag_leaf | DAH28 | 9.03 | HC |
| SRR4457246 | flag_leaf | DAH44 | 4.98 | HC |
| SRR4457247 | flag_leaf | DAH44 | 8.20 | HC |
| SRR4457248 | flag_leaf | DAH44 | 7.69 | HC |
| SRR1213690 | flower | wt(flower buds) | 5.54 | HC |
| SRR1213691 | flower | wt | 5.84 | HC |
| SRR8060836 | leaf | wild_type | 6.43 | HC |
| SRR8060837 | leaf | wild_type | 3.70 | HC |
| SRR8240825 | leaf | wild_type | 3.47 | HC |
| SRR8240826 | leaf | wild_type | 26.84 | HC |
| SRR8240818 | leaf | wild_type | 16.22 | HC |
| SRR8240820 | leaf | wild_type | 5.28 | HC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 6.97 | HC |
| SRR1761788 | leaf | "wild_type,drought,2" | 21.86 | HC |
| SRR1761789 | leaf | "wild_type,drought,2" | 13.48 | HC |
| SRR1761780 | leaf | "wild_type,drought,1" | 21.86 | HC |
| SRR1761781 | leaf | "wild_type,drought,1" | 13.48 | HC |
| SRR1761528 | leaf | drought | 21.86 | HC |
| SRR1761529 | leaf | drought | 13.48 | HC |
| SRR3209770 | leaf | Watered;Long_Day | 7.57 | HC |
| SRR3209771 | leaf | Drought;Long_Day | 4.28 | HC |
| SRR3209773 | leaf | Watered;Short_Day | 4.04 | HC |
| SRR3209776 | leaf | Drought;Short_Day | 7.12 | HC |
| SRR3209780 | leaf | Drought;Short_Day | 12.88 | HC |
| SRR6502085 | leaf | 100 mM NaCl | 36.81 | HC |
| SRR6502099 | leaf | 100 mM NaCl | 11.83 | HC |
| SRR6502100 | leaf | control | 15.64 | HC |
| SRR6502101 | leaf | control | 13.92 | HC |
| SRR6502102 | leaf | control | 17.46 | HC |
| SRR6053392 | leaf | ethanol solvent (untreated control) | 22.06 | HC |
| SRR6053393 | leaf | ethanol solvent (untreated control) | 21.59 | HC |
| SRR6053394 | leaf | ethanol solvent (untreated control) | 21.22 | HC |
| SRR6053395 | leaf | gibberellic acid (GA) | 32.19 | HC |
| SRR6053398 | leaf | Paclobutrazol (PB) | 18.72 | HC |
| SRR6053400 | leaf | Paclobutrazol (PB) | 18.62 | HC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 2.92 | HC |
| SRR5110429 | panicle | Dawn | 13.14 | HC |
| SRR5110431 | panicle | Dawn | 6.46 | HC |
| SRR5110432 | panicle | Dawn | 10.00 | HC |
| SRR5110433 | panicle | Dawn + 3.5h | 7.86 | HC |
| SRR5110434 | panicle | Dawn + 3.5h | 6.99 | HC |
| SRR5110437 | panicle | Dawn + 7h | 6.41 | HC |
| SRR5110439 | panicle | Dawn + 7h | 14.92 | HC |
| SRR5110442 | panicle | Dawn + 10.5h | 5.37 | HC |
| SRR5110445 | panicle | Dusk | 6.28 | HC |
| SRR5110448 | panicle | Dusk | 9.32 | HC |
| SRR5110452 | panicle | Dawn + 14h | 9.19 | HC |
| SRR5110453 | panicle | Dawn + 17.5h | 7.77 | HC |
| SRR5110454 | panicle | Dawn + 17.5h | 7.74 | HC |
| SRR5110455 | panicle | Dawn + 17.5h | 9.25 | HC |
| SRR5110457 | panicle | Dawn + 21h | 9.75 | HC |
| SRR5110458 | panicle | Dawn + 21h | 3.66 | HC |
| SRR5110460 | panicle | Dawn + 21h | 9.39 | HC |
| SRR1213696 | endosprem | wt(milk grains) | 3.95 | HC |
| SRR1213697 | endosprem | wt(mature seeds) | 3.11 | HC |
| SRR1633182 | panicle | WT | 13.57 | HC |
| SRR1633185 | panicle | WT | 22.06 | HC |
| SRR5126147 | root | "mock,1_day" | 5.32 | HC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 5.07 | HC |
| SRR5126153 | root | "mock,7_days" | 10.99 | HC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 8.89 | HC |
| SRR5126165 | root | "mock,14_days" | 15.06 | HC |
| SRR5126167 | root | "mock,14_days" | 9.82 | HC |
| SRR5126169 | root | "mock,14_days" | 7.77 | HC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 6.15 | HC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 6.11 | HC |
| SRR3472897 | root | nontransgenic_rice_plant | 5.71 | HC |
| SRR4947494 | root | control | 15.35 | HC |
| SRR4947509 | root | Al | 5.81 | HC |
| SRR6502091 | root | 100 mM NaCl | 20.30 | HC |
| SRR6502093 | root | 100 mM NaCl | 20.32 | HC |
| SRR6502094 | root | control | 17.16 | HC |
| SRR6502095 | root | control | 7.69 | HC |
| SRR6502096 | root | control | 13.68 | HC |
| SRR6502103 | root | 100 mM NaCl | 5.43 | HC |
| SRR1740434 | root_differentiation_zone | wt | 8.50 | HC |
| SRR1740435 | root_differentiation_zone | wt | 8.92 | HC |
| SRR1740436 | root_differentiation_zone | wt | 10.07 | HC |
| SRR1740431 | root_elongation_zone | wt | 14.71 | HC |
| SRR1740428 | root_meristematic_zone | wt | 8.55 | HC |
| SRR3098741 | seedling | wt | 6.00 | HC |
| SRR3098742 | seedling | wt | 4.59 | HC |
| SRR3098743 | seedling | wt | 4.74 | HC |
| SRR358791 | seedling | wt | 35.30 | HC |
| SRR358792 | seedling | wt | 30.62 | HC |
| SRR358793 | seedling | wt | 20.42 | HC |
| SRR358794 | seedling | wt | 18.79 | HC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 9.67 | HC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 12.03 | HC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 10.16 | HC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 8.60 | HC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 11.37 | HC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 8.37 | HC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 5.61 | HC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 9.48 | HC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 13.09 | HC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 9.16 | HC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 12.46 | HC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 9.22 | HC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 10.35 | HC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 20.58 | HC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 13.83 | HC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 18.86 | HC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 16.80 | HC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 19.65 | HC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 12.53 | HC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 15.25 | HC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 15.21 | HC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 3.47 | HC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 3.89 | HC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 5.07 | HC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 2.74 | HC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 4.32 | HC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 5.71 | HC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 15.69 | HC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 13.69 | HC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 10.80 | HC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 18.06 | HC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 13.04 | HC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 13.71 | HC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 13.76 | HC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 13.05 | HC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 12.00 | HC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 10.74 | HC |
| SRR1617553 | shoot_apical_meristem | no collect | 18.15 | HC |
| SRR1617556 | shoot_apical_meristem | no collect | 17.23 | HC |
| SRR1617557 | shoot_apical_meristem | no collect | 18.96 | HC |
| SRR1617558 | shoot_apical_meristem | no collect | 17.11 | HC |
| SRR1617559 | shoot_apical_meristem | no collect | 12.82 | HC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 6.44 | HC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 7.14 | HC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 7.51 | HC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 6.76 | HC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 8.86 | HC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 11.03 | HC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 12.65 | HC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 6.32 | HC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 3.71 | HC |