| SRR5560727 | caryopsis | wild_type | 17.20 | HC |
| SRR5560728 | caryopsis | wild_type | 11.21 | HC |
| SRR5560729 | caryopsis | wild_type | 7.26 | HC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 5.84 | HC |
| SRR1213691 | flower | wt | 4.18 | HC |
| SRR8240819 | leaf | wild_type | 3.75 | HC |
| SRR8240820 | leaf | wild_type | 3.38 | HC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 4.94 | HC |
| SRR504365 | leaf | wt | 4.39 | HC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 9.61 | HC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 7.73 | HC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 8.02 | HC |
| SRR6216698 | leaf | nontransgenic rice plant | 3.79 | HC |
| SRR6216699 | leaf | nontransgenic rice plant | 4.87 | HC |
| SRR6168973 | leaf | none (control) | 20.99 | HC |
| SRR6168974 | leaf | none (control) | 24.04 | HC |
| SRR6168975 | leaf | none (control) | 20.26 | HC |
| SRR6168980 | leaf | none (control) | 2.30 | HC |
| SRR6168981 | leaf | none (control) | 4.57 | HC |
| SRR8582888 | panicle | AM | 4.68 | HC |
| SRR8582889 | panicle | AM | 3.93 | HC |
| SRR8582890 | panicle | AM | 3.02 | HC |
| SRR8582891 | panicle | PM | 38.78 | HC |
| SRR8582892 | panicle | PM | 25.54 | HC |
| SRR8582893 | panicle | PM | 34.56 | HC |
| SRR5278376 | pistil | "Balilla,S2" | 4.80 | HC |
| SRR5278377 | pistil | "Balilla,S2" | 5.96 | HC |
| SRR5278378 | pistil | "Balilla,S3" | 20.47 | HC |
| SRR5278379 | pistil | "Balilla,S3" | 28.14 | HC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 6.81 | HC |
| SRR6502092 | root | 100 mM NaCl | 5.23 | HC |
| SRR6502095 | root | control | 5.53 | HC |
| SRR1740433 | root_elongation_zone | wt | 3.78 | HC |
| SRR6441555 | seedling | wild_type | 3.55 | HC |
| SRR3098743 | seedling | wt | 2.87 | HC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 10.26 | HC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 7.97 | HC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 6.75 | HC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 14.24 | HC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 11.59 | HC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 10.19 | HC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 7.14 | HC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 9.72 | HC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 10.26 | HC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 7.40 | HC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 7.39 | HC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 6.26 | HC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 9.93 | HC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 8.28 | HC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 5.66 | HC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 5.26 | HC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 6.50 | HC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 13.19 | HC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 9.66 | HC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 9.65 | HC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 9.74 | HC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 11.03 | HC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 14.11 | HC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 10.57 | HC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 9.38 | HC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 14.34 | HC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 9.51 | HC |
| SRR1617557 | shoot_apical_meristem | no collect | 8.80 | HC |
| SRR1617558 | shoot_apical_meristem | no collect | 9.56 | HC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 57.19 | HC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 55.14 | HC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 65.85 | HC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 21.26 | HC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 25.63 | HC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 19.72 | HC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 14.46 | HC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 15.10 | HC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 14.48 | HC |