| SRR3745127 | anther | wt | 6.35 | HC |
| SRR5560728 | caryopsis | wild_type | 9.57 | HC |
| SRR5560729 | caryopsis | wild_type | 12.10 | HC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 19.20 | HC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 14.31 | HC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 17.75 | HC |
| SRR4947495 | root | control | 26.39 | HC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 21.40 | HC |
| SRR7265400 | coleoptile | 2dA | 4.09 | HC |
| SRR7265401 | coleoptile | 2dA | 4.91 | HC |
| SRR7265402 | coleoptile | 2dA | 6.07 | HC |
| SRR7265406 | coleoptile | 3dA | 4.93 | HC |
| SRR7265407 | coleoptile | 3dA | 5.46 | HC |
| SRR7265408 | coleoptile | 3dA | 4.07 | HC |
| SRR7265409 | coleoptile | 3dN | 4.45 | HC |
| SRR7265410 | coleoptile | 3dN | 5.36 | HC |
| SRR7265411 | coleoptile | 3dN | 5.60 | HC |
| SRR7265416 | coleoptile | 4dN | 4.43 | HC |
| SRR7265417 | coleoptile | 4dN | 4.05 | HC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 24.77 | HC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 31.06 | HC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 11.74 | HC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 10.68 | HC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 37.47 | HC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 12.53 | HC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 22.61 | HC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 6.92 | HC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 27.45 | HC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 34.02 | HC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 46.57 | HC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 35.40 | HC |
| SRR7265391 | embryo | 12hN | 5.90 | HC |
| SRR7265393 | embryo | 12hN | 6.31 | HC |
| SRR2338868 | endosprem | high_temperature | 3.03 | HC |
| SRR1213690 | flower | wt(flower buds) | 6.71 | HC |
| SRR1213691 | flower | wt | 6.95 | HC |
| SRR8060835 | leaf | wild_type | 7.30 | HC |
| SRR8060836 | leaf | wild_type | 5.09 | HC |
| SRR8060837 | leaf | wild_type | 8.76 | HC |
| SRR8240824 | leaf | wild_type | 2.82 | HC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 35.10 | HC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 20.00 | HC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 25.45 | HC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 27.14 | HC |
| SRR8611900 | leaf | Non-inoculated | 12.02 | HC |
| SRR8611901 | leaf | Non-inoculated | 10.11 | HC |
| SRR8611902 | leaf | Non-inoculated | 11.16 | HC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 4.18 | HC |
| SRR6216698 | leaf | nontransgenic rice plant | 12.25 | HC |
| SRR6216699 | leaf | nontransgenic rice plant | 19.16 | HC |
| SRR6502099 | leaf | 100 mM NaCl | 5.50 | HC |
| SRR6502100 | leaf | control | 7.53 | HC |
| SRR6502101 | leaf | control | 4.57 | HC |
| SRR5856930 | leaf | salt | 2.02 | HC |
| SRR5856933 | leaf | control | 3.65 | HC |
| SRR5856934 | leaf | control | 3.02 | HC |
| SRR6168973 | leaf | none (control) | 85.04 | HC |
| SRR6168974 | leaf | none (control) | 107.44 | HC |
| SRR6168975 | leaf | none (control) | 43.27 | HC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 68.55 | HC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 67.26 | HC |
| SRR6168980 | leaf | none (control) | 4.52 | HC |
| SRR6168981 | leaf | none (control) | 11.59 | HC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 29.78 | HC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 15.96 | HC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 19.10 | HC |
| SRR5110429 | panicle | Dawn | 6.81 | HC |
| SRR5110430 | panicle | Dawn | 9.98 | HC |
| SRR5110431 | panicle | Dawn | 5.02 | HC |
| SRR5110432 | panicle | Dawn | 11.58 | HC |
| SRR4947496 | root | control | 16.61 | HC |
| SRR5110433 | panicle | Dawn + 3.5h | 19.09 | HC |
| SRR5110434 | panicle | Dawn + 3.5h | 14.34 | HC |
| SRR5110435 | panicle | Dawn + 3.5h | 16.31 | HC |
| SRR5110436 | panicle | Dawn + 3.5h | 9.44 | HC |
| SRR5110437 | panicle | Dawn + 7h | 15.33 | HC |
| SRR5110438 | panicle | Dawn + 7h | 24.60 | HC |
| SRR5110439 | panicle | Dawn + 7h | 9.08 | HC |
| SRR5110440 | panicle | Dawn + 7h | 11.58 | HC |
| SRR5110441 | panicle | Dawn + 10.5h | 19.17 | HC |
| SRR5110442 | panicle | Dawn + 10.5h | 11.41 | HC |
| SRR5110443 | panicle | Dawn + 10.5h | 14.06 | HC |
| SRR5110444 | panicle | Dawn + 10.5h | 13.64 | HC |
| SRR5110445 | panicle | Dusk | 11.62 | HC |
| SRR5110446 | panicle | Dusk | 14.91 | HC |
| SRR5110447 | panicle | Dusk | 23.52 | HC |
| SRR5110448 | panicle | Dusk | 13.21 | HC |
| SRR5110449 | panicle | Dawn + 14h | 10.17 | HC |
| SRR5110450 | panicle | Dawn + 14h | 10.94 | HC |
| SRR5110451 | panicle | Dawn + 14h | 11.55 | HC |
| SRR5110452 | panicle | Dawn + 14h | 11.09 | HC |
| SRR5110453 | panicle | Dawn + 17.5h | 11.21 | HC |
| SRR5110454 | panicle | Dawn + 17.5h | 8.10 | HC |
| SRR5110455 | panicle | Dawn + 17.5h | 10.89 | HC |
| SRR5110456 | panicle | Dawn + 17.5h | 12.28 | HC |
| SRR5110457 | panicle | Dawn + 21h | 10.25 | HC |
| SRR5110458 | panicle | Dawn + 21h | 7.53 | HC |
| SRR5110459 | panicle | Dawn + 21h | 9.15 | HC |
| SRR5110460 | panicle | Dawn + 21h | 5.78 | HC |
| SRR5278374 | pistil | "Balilla,S1" | 8.92 | HC |
| SRR5278375 | pistil | "Balilla,S1" | 7.48 | HC |
| SRR5278376 | pistil | "Balilla,S2" | 16.73 | HC |
| SRR5278377 | pistil | "Balilla,S2" | 15.56 | HC |
| SRR5278378 | pistil | "Balilla,S3" | 21.51 | HC |
| SRR5278379 | pistil | "Balilla,S3" | 30.69 | HC |
| SRR5126147 | root | "mock,1_day" | 11.93 | HC |
| SRR5126148 | root | "mock,1_day" | 14.32 | HC |
| SRR5126149 | root | "mock,1_day" | 8.13 | HC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 6.76 | HC |
| SRR5126153 | root | "mock,7_days" | 9.68 | HC |
| SRR5126155 | root | "mock,7_days" | 10.76 | HC |
| SRR5126157 | root | "mock,7_days" | 6.36 | HC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 5.63 | HC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 10.83 | HC |
| SRR5126165 | root | "mock,14_days" | 6.96 | HC |
| SRR5126167 | root | "mock,14_days" | 4.07 | HC |
| SRR5126169 | root | "mock,14_days" | 12.46 | HC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 5.97 | HC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 6.92 | HC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 8.82 | HC |
| SRR3472897 | root | nontransgenic_rice_plant | 8.21 | HC |
| SRR3472900 | root | nontransgenic_rice_plant | 5.06 | HC |
| SRR4947478 | root | control | 18.36 | HC |
| SRR4947479 | root | control | 25.67 | HC |
| SRR4947480 | root | control | 23.16 | HC |
| SRR4947481 | root | control | 21.48 | HC |
| SRR4947482 | root | Al | 7.49 | HC |
| SRR4947483 | root | Al | 15.92 | HC |
| SRR4947484 | root | Al | 18.88 | HC |
| SRR4947485 | root | Al | 13.25 | HC |
| SRR4947487 | root | control | 19.17 | HC |
| SRR4947488 | root | control | 22.08 | HC |
| SRR4947489 | root | control | 21.21 | HC |
| SRR4947490 | root | Al | 15.58 | HC |
| SRR4947491 | root | Al | 18.15 | HC |
| SRR4947492 | root | Al | 10.79 | HC |
| SRR4947493 | root | Al | 14.71 | HC |
| SRR4947494 | root | control | 10.27 | HC |
| SRR4947497 | root | control | 18.23 | HC |
| SRR4947498 | root | Al | 25.79 | HC |
| SRR4947499 | root | Al | 18.48 | HC |
| SRR4947500 | root | Al | 16.41 | HC |
| SRR4947501 | root | Al | 13.43 | HC |
| SRR4947502 | root | control | 26.05 | HC |
| SRR4947503 | root | control | 14.94 | HC |
| SRR4947504 | root | control | 14.08 | HC |
| SRR4947505 | root | control | 12.86 | HC |
| SRR4947506 | root | Al | 8.38 | HC |
| SRR4947507 | root | Al | 15.83 | HC |
| SRR4947508 | root | Al | 8.13 | HC |
| SRR4947509 | root | Al | 6.27 | HC |
| SRR6502091 | root | 100 mM NaCl | 9.40 | HC |
| SRR6502092 | root | 100 mM NaCl | 15.22 | HC |
| SRR6502093 | root | 100 mM NaCl | 9.86 | HC |
| SRR6502094 | root | control | 14.27 | HC |
| SRR6502095 | root | control | 14.41 | HC |
| SRR6502096 | root | control | 12.83 | HC |
| SRR6502103 | root | 100 mM NaCl | 10.77 | HC |
| SRR6502104 | root | 100 mM NaCl | 9.51 | HC |
| SRR6502105 | root | 100 mM NaCl | 26.77 | HC |
| SRR6502106 | root | control | 13.38 | HC |
| SRR6502107 | root | control | 11.48 | HC |
| SRR6502108 | root | control | 14.16 | HC |
| SRR1740434 | root_differentiation_zone | wt | 7.17 | HC |
| SRR1740435 | root_differentiation_zone | wt | 17.71 | HC |
| SRR1740436 | root_differentiation_zone | wt | 21.74 | HC |
| SRR1740431 | root_elongation_zone | wt | 25.20 | HC |
| SRR1740432 | root_elongation_zone | wt | 36.00 | HC |
| SRR1740433 | root_elongation_zone | wt | 31.18 | HC |
| SRR1740428 | root_meristematic_zone | wt | 18.32 | HC |
| SRR1740429 | root_meristematic_zone | wt | 13.55 | HC |
| SRR1740430 | root_meristematic_zone | wt | 23.70 | HC |
| SRR6441554 | seedling | wild_type | 6.86 | HC |
| SRR6441555 | seedling | wild_type | 10.85 | HC |
| SRR2154086 | seedling | wt | 8.84 | HC |
| SRR2154082 | seedling | wt | 12.55 | HC |
| SRR2154083 | seedling | wt | 8.21 | HC |
| SRR2154084 | seedling | wt | 10.90 | HC |
| SRR2154085 | seedling | wt | 9.55 | HC |
| SRR2154087 | seedling | wt | 8.26 | HC |
| SRR3098742 | seedling | wt | 3.37 | HC |
| SRR1944583 | seedling | no_treatment | 11.61 | HC |
| SRR358794 | seedling | wt | 8.05 | HC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 7.04 | HC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 15.89 | HC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 11.41 | HC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 8.59 | HC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 11.09 | HC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 8.83 | HC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 6.28 | HC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 15.84 | HC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 5.25 | HC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 4.35 | HC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 5.17 | HC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 4.81 | HC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 8.55 | HC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 5.90 | HC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 7.73 | HC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 4.97 | HC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 6.81 | HC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 6.35 | HC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 6.01 | HC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 6.59 | HC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 5.19 | HC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 3.81 | HC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 6.30 | HC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 4.98 | HC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 4.01 | HC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 52.85 | HC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 44.51 | HC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 55.82 | HC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 42.56 | HC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 40.49 | HC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 41.84 | HC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 36.68 | HC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 44.38 | HC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 33.54 | HC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 43.84 | HC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 47.82 | HC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 37.98 | HC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 37.44 | HC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 43.88 | HC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 38.21 | HC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 30.51 | HC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 42.90 | HC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 46.47 | HC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 31.04 | HC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 28.02 | HC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 41.99 | HC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 28.86 | HC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 25.64 | HC |
| SRR1617549 | shoot_apical_meristem | no collect | 12.76 | HC |
| SRR1617550 | shoot_apical_meristem | no collect | 14.97 | HC |
| SRR1617553 | shoot_apical_meristem | no collect | 10.66 | HC |
| SRR1617554 | shoot_apical_meristem | no collect | 11.65 | HC |
| SRR1617557 | shoot_apical_meristem | no collect | 11.84 | HC |
| SRR1617558 | shoot_apical_meristem | no collect | 9.25 | HC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 23.37 | HC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 21.00 | HC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 22.56 | HC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 28.58 | HC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 31.59 | HC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 29.74 | HC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 86.70 | HC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 92.46 | HC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 109.92 | HC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 11.37 | HC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 10.24 | HC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 5.88 | HC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 4.22 | HC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 7.10 | HC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 7.44 | HC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 7.68 | HC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 10.03 | HC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 9.63 | HC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 10.81 | HC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 7.93 | HC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 10.33 | HC |