| SRR4457255 | 2nd_leaf | DAH20 | 5.20 | HC |
| SRR4457258 | 2nd_leaf | DAH28 | 3.97 | HC |
| SRR4457259 | 2nd_leaf | DAH28 | 10.03 | HC |
| SRR4457265 | 2nd_leaf | DAH44 | 7.91 | HC |
| SRR358795 | callus | wt | 36.83 | HC |
| SRR358796 | callus | wt | 37.91 | HC |
| SRR358797 | callus | wt | 35.25 | HC |
| SRR358798 | callus | wt | 38.12 | HC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 11.55 | HC |
| SRR7265400 | coleoptile | 2dA | 15.84 | HC |
| SRR7265401 | coleoptile | 2dA | 24.87 | HC |
| SRR7265402 | coleoptile | 2dA | 19.82 | HC |
| SRR7265403 | coleoptile | 2dN | 8.17 | HC |
| SRR7265404 | coleoptile | 2dN | 11.00 | HC |
| SRR7265405 | coleoptile | 2dN | 6.87 | HC |
| SRR7265406 | coleoptile | 3dA | 12.44 | HC |
| SRR7265407 | coleoptile | 3dA | 11.40 | HC |
| SRR7265408 | coleoptile | 3dA | 8.19 | HC |
| SRR7265409 | coleoptile | 3dN | 6.72 | HC |
| SRR7265410 | coleoptile | 3dN | 10.78 | HC |
| SRR7265411 | coleoptile | 3dN | 6.10 | HC |
| SRR7265413 | coleoptile | 4dA | 13.78 | HC |
| SRR7265414 | coleoptile | 4dA | 8.82 | HC |
| SRR7265415 | coleoptile | 4dN | 11.61 | HC |
| SRR7265417 | coleoptile | 4dN | 6.40 | HC |
| SRR7265418 | coleoptile | 3dN1dA | 5.90 | HC |
| SRR7265419 | coleoptile | 3dN1dA | 4.45 | HC |
| SRR7265420 | coleoptile | 3dN1dA | 4.71 | HC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 11.48 | HC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 14.50 | HC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 8.18 | HC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 11.84 | HC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 12.69 | HC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 7.27 | HC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 20.91 | HC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 26.67 | HC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 17.72 | HC |
| SRR7265373 | embryo | dry seed 0 h | 33.27 | HC |
| SRR7265374 | embryo | dry seed 0 h | 21.97 | HC |
| SRR7265376 | embryo | 1hA | 21.21 | HC |
| SRR7265377 | embryo | 1hA | 10.11 | HC |
| SRR7265378 | embryo | 1hA | 29.40 | HC |
| SRR7265379 | embryo | 1hN | 13.18 | HC |
| SRR7265380 | embryo | 1hN | 26.04 | HC |
| SRR7265381 | embryo | 1hN | 26.25 | HC |
| SRR7265382 | embryo | 3hA | 43.71 | HC |
| SRR7265383 | embryo | 3hA | 70.44 | HC |
| SRR7265384 | embryo | 3hA | 55.42 | HC |
| SRR7265385 | embryo | 3hN | 17.63 | HC |
| SRR7265386 | embryo | 3hN | 22.44 | HC |
| SRR7265387 | embryo | 3hN | 26.72 | HC |
| SRR7265388 | embryo | 12hA | 22.85 | HC |
| SRR7265389 | embryo | 12hA | 21.78 | HC |
| SRR7265390 | embryo | 12hA | 31.70 | HC |
| SRR7265391 | embryo | 12hN | 18.38 | HC |
| SRR7265392 | embryo | 12hN | 26.63 | HC |
| SRR7265393 | embryo | 12hN | 34.39 | HC |
| SRR7265394 | embryo | 24hA | 14.32 | HC |
| SRR7265395 | embryo | 24hA | 21.92 | HC |
| SRR7265396 | embryo | 24hA | 22.53 | HC |
| SRR7265397 | embryo | 24hN | 31.82 | HC |
| SRR7265398 | embryo | 24hN | 8.77 | HC |
| SRR7265399 | embryo | 24hN | 23.23 | HC |
| SRR2338866 | endosprem | control | 11.32 | HC |
| SRR4457234 | flag_leaf | DAH12 | 3.39 | HC |
| SRR4457237 | flag_leaf | DAH20 | 4.52 | HC |
| SRR4457246 | flag_leaf | DAH44 | 4.61 | HC |
| SRR1213691 | flower | wt | 5.05 | HC |
| SRR8060837 | leaf | wild_type | 3.08 | HC |
| SRR8240824 | leaf | wild_type | 3.90 | HC |
| SRR8240826 | leaf | wild_type | 4.73 | HC |
| SRR8240820 | leaf | wild_type | 2.57 | HC |
| SRR504365 | leaf | wt | 8.75 | HC |
| SRR3209769 | leaf | Watered;Long_Day | 4.25 | HC |
| SRR3209770 | leaf | Watered;Long_Day | 3.61 | HC |
| SRR3209773 | leaf | Watered;Short_Day | 5.91 | HC |
| SRR3209774 | leaf | Watered;Short_Day | 5.23 | HC |
| SRR3209777 | leaf | Watered;Long_Day | 7.44 | HC |
| SRR3209779 | leaf | Watered;Short_Day | 5.78 | HC |
| SRR8611901 | leaf | Non-inoculated | 9.57 | HC |
| SRR8611902 | leaf | Non-inoculated | 6.62 | HC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 4.13 | HC |
| SRR6216698 | leaf | nontransgenic rice plant | 4.20 | HC |
| SRR6216699 | leaf | nontransgenic rice plant | 6.86 | HC |
| SRR6502085 | leaf | 100 mM NaCl | 6.41 | HC |
| SRR6502088 | leaf | control | 5.18 | HC |
| SRR6502089 | leaf | control | 4.55 | HC |
| SRR6502090 | leaf | control | 4.13 | HC |
| SRR6502098 | leaf | 100 mM NaCl | 5.40 | HC |
| SRR6502101 | leaf | control | 4.80 | HC |
| SRR6502102 | leaf | control | 4.78 | HC |
| SRR5856927 | leaf | control | 5.00 | HC |
| SRR5856931 | leaf | salt | 2.42 | HC |
| SRR5856933 | leaf | control | 4.70 | HC |
| SRR5856934 | leaf | control | 3.68 | HC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 10.33 | HC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 4.20 | HC |
| SRR5110434 | panicle | Dawn + 3.5h | 5.08 | HC |
| SRR5110443 | panicle | Dawn + 10.5h | 5.74 | HC |
| SRR5110447 | panicle | Dusk | 5.30 | HC |
| SRR5110458 | panicle | Dawn + 21h | 4.05 | HC |
| SRR5110459 | panicle | Dawn + 21h | 4.92 | HC |
| SRR1213697 | endosprem | wt(mature seeds) | 2.69 | HC |
| SRR1633182 | panicle | WT | 34.42 | HC |
| SRR1633185 | panicle | WT | 59.26 | HC |
| SRR5278374 | pistil | "Balilla,S1" | 31.11 | HC |
| SRR5278375 | pistil | "Balilla,S1" | 36.04 | HC |
| SRR5278376 | pistil | "Balilla,S2" | 29.71 | HC |
| SRR5278377 | pistil | "Balilla,S2" | 33.39 | HC |
| SRR5278378 | pistil | "Balilla,S3" | 52.72 | HC |
| SRR5278379 | pistil | "Balilla,S3" | 35.85 | HC |
| SRR5126148 | root | "mock,1_day" | 5.49 | HC |
| SRR5126149 | root | "mock,1_day" | 8.25 | HC |
| SRR5126153 | root | "mock,7_days" | 6.96 | HC |
| SRR5126155 | root | "mock,7_days" | 8.55 | HC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 21.96 | HC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 13.11 | HC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 7.98 | HC |
| SRR5126165 | root | "mock,14_days" | 7.12 | HC |
| SRR5126169 | root | "mock,14_days" | 7.80 | HC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 18.83 | HC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 18.02 | HC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 19.48 | HC |
| SRR1213694 | root | wt | 3.19 | HC |
| SRR1213695 | root | wt | 3.99 | HC |
| SRR4947478 | root | control | 9.97 | HC |
| SRR4947482 | root | Al | 9.62 | HC |
| SRR4947485 | root | Al | 8.30 | HC |
| SRR4947487 | root | control | 9.43 | HC |
| SRR4947490 | root | Al | 12.63 | HC |
| SRR4947491 | root | Al | 12.55 | HC |
| SRR4947494 | root | control | 7.50 | HC |
| SRR4947500 | root | Al | 11.70 | HC |
| SRR6502091 | root | 100 mM NaCl | 20.48 | HC |
| SRR6502092 | root | 100 mM NaCl | 25.79 | HC |
| SRR6502093 | root | 100 mM NaCl | 24.19 | HC |
| SRR6502094 | root | control | 25.94 | HC |
| SRR6502095 | root | control | 26.54 | HC |
| SRR6502096 | root | control | 19.91 | HC |
| SRR6502103 | root | 100 mM NaCl | 21.24 | HC |
| SRR6502104 | root | 100 mM NaCl | 20.90 | HC |
| SRR6502105 | root | 100 mM NaCl | 26.02 | HC |
| SRR6502106 | root | control | 23.99 | HC |
| SRR6502107 | root | control | 21.71 | HC |
| SRR6502108 | root | control | 21.11 | HC |
| SRR1740434 | root_differentiation_zone | wt | 11.24 | HC |
| SRR1740435 | root_differentiation_zone | wt | 6.42 | HC |
| SRR1740436 | root_differentiation_zone | wt | 7.71 | HC |
| SRR1740431 | root_elongation_zone | wt | 10.65 | HC |
| SRR1740432 | root_elongation_zone | wt | 10.03 | HC |
| SRR1740433 | root_elongation_zone | wt | 11.09 | HC |
| SRR1740428 | root_meristematic_zone | wt | 13.44 | HC |
| SRR1740429 | root_meristematic_zone | wt | 14.20 | HC |
| SRR1740430 | root_meristematic_zone | wt | 17.17 | HC |
| SRR6441555 | seedling | wild_type | 6.62 | HC |
| SRR2154082 | seedling | wt | 9.29 | HC |
| SRR2154084 | seedling | wt | 11.44 | HC |
| SRR2154085 | seedling | wt | 5.23 | HC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 28.83 | HC |
| SRR358791 | seedling | wt | 12.70 | HC |
| SRR358792 | seedling | wt | 11.58 | HC |
| SRR358793 | seedling | wt | 10.25 | HC |
| SRR358794 | seedling | wt | 9.00 | HC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 16.17 | HC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 15.64 | HC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 13.59 | HC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 15.46 | HC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 14.12 | HC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 14.36 | HC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 13.62 | HC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 12.07 | HC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 9.93 | HC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 14.90 | HC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 15.94 | HC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 3.41 | HC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 3.92 | HC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 4.76 | HC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 4.09 | HC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 5.39 | HC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 5.48 | HC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 9.07 | HC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 6.14 | HC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 4.99 | HC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 6.81 | HC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 145.17 | HC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 148.08 | HC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 147.38 | HC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 146.14 | HC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 180.83 | HC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 150.14 | HC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 46.50 | HC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 138.92 | HC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 101.05 | HC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 139.74 | HC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 142.31 | HC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 77.86 | HC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 142.47 | HC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 77.59 | HC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 68.25 | HC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 97.78 | HC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 137.63 | HC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 135.36 | HC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 94.48 | HC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 72.49 | HC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 133.44 | HC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 130.74 | HC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 152.44 | HC |
| SRR1617549 | shoot_apical_meristem | no collect | 40.82 | HC |
| SRR1617550 | shoot_apical_meristem | no collect | 38.71 | HC |
| SRR1617553 | shoot_apical_meristem | no collect | 52.09 | HC |
| SRR1617554 | shoot_apical_meristem | no collect | 58.11 | HC |
| SRR1617556 | shoot_apical_meristem | no collect | 39.75 | HC |
| SRR1617557 | shoot_apical_meristem | no collect | 67.10 | HC |
| SRR1617558 | shoot_apical_meristem | no collect | 68.34 | HC |
| SRR1617559 | shoot_apical_meristem | no collect | 57.04 | HC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 83.63 | HC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 84.72 | HC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 24.38 | HC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 83.68 | HC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 79.21 | HC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 83.67 | HC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 7.81 | HC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 27.84 | HC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 7.32 | HC |