| SRR4457251 | 2nd_leaf | DAH4 | 3.85 | HC |
| SRR4457252 | 2nd_leaf | DAH12 | 5.58 | HC |
| SRR4457253 | 2nd_leaf | DAH12 | 5.06 | HC |
| SRR4457254 | 2nd_leaf | DAH12 | 4.93 | HC |
| SRR4457257 | 2nd_leaf | DAH20 | 4.52 | HC |
| SRR5560728 | caryopsis | wild_type | 7.62 | HC |
| SRR5560729 | caryopsis | wild_type | 9.47 | HC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 17.06 | HC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 16.59 | HC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 11.05 | HC |
| SRR4947495 | root | control | 5.12 | HC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 13.29 | HC |
| SRR7265400 | coleoptile | 2dA | 5.38 | HC |
| SRR7265401 | coleoptile | 2dA | 5.75 | HC |
| SRR7265402 | coleoptile | 2dA | 5.13 | HC |
| SRR7265406 | coleoptile | 3dA | 7.97 | HC |
| SRR7265407 | coleoptile | 3dA | 6.66 | HC |
| SRR7265408 | coleoptile | 3dA | 4.57 | HC |
| SRR7265413 | coleoptile | 4dA | 5.65 | HC |
| SRR7265414 | coleoptile | 4dA | 5.55 | HC |
| SRR7265418 | coleoptile | 3dN1dA | 8.38 | HC |
| SRR7265419 | coleoptile | 3dN1dA | 5.34 | HC |
| SRR7265420 | coleoptile | 3dN1dA | 7.89 | HC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 5.27 | HC |
| SRR7265388 | embryo | 12hA | 8.02 | HC |
| SRR7265389 | embryo | 12hA | 7.84 | HC |
| SRR7265390 | embryo | 12hA | 7.21 | HC |
| SRR7265394 | embryo | 24hA | 6.39 | HC |
| SRR7265395 | embryo | 24hA | 6.63 | HC |
| SRR7265396 | embryo | 24hA | 5.78 | HC |
| SRR4457232 | flag_leaf | DAH4 | 5.46 | HC |
| SRR4457233 | flag_leaf | DAH4 | 5.56 | HC |
| SRR4457234 | flag_leaf | DAH12 | 4.10 | HC |
| SRR4457235 | flag_leaf | DAH12 | 4.03 | HC |
| SRR4457236 | flag_leaf | DAH12 | 4.19 | HC |
| SRR4457237 | flag_leaf | DAH20 | 3.23 | HC |
| SRR4457243 | flag_leaf | DAH36 | 4.78 | HC |
| SRR4457244 | flag_leaf | DAH36 | 4.66 | HC |
| SRR4457245 | flag_leaf | DAH36 | 4.86 | HC |
| SRR1213690 | flower | wt(flower buds) | 4.68 | HC |
| SRR1213691 | flower | wt | 6.77 | HC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 6.40 | HC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 10.22 | HC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 6.35 | HC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 8.91 | HC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 8.75 | HC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 8.22 | HC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 7.99 | HC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 8.34 | HC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 9.05 | HC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 8.06 | HC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 7.84 | HC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 7.48 | HC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 8.17 | HC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 8.72 | HC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 8.17 | HC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 10.30 | HC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 8.38 | HC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 8.44 | HC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 8.59 | HC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 7.41 | HC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 8.29 | HC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 7.52 | HC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 9.06 | HC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 8.65 | HC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 8.11 | HC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 8.04 | HC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 8.74 | HC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 9.74 | HC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 10.34 | HC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 8.60 | HC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 7.11 | HC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 10.63 | HC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 9.92 | HC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 10.37 | HC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 7.69 | HC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 9.32 | HC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 8.36 | HC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 8.67 | HC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 7.06 | HC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 6.62 | HC |
| SRR1761788 | leaf | "wild_type,drought,2" | 8.19 | HC |
| SRR1761789 | leaf | "wild_type,drought,2" | 7.46 | HC |
| SRR1761790 | leaf | "wild_type,control,2" | 6.72 | HC |
| SRR1761791 | leaf | "wild_type,control,2" | 6.06 | HC |
| SRR1761780 | leaf | "wild_type,drought,1" | 8.19 | HC |
| SRR1761781 | leaf | "wild_type,drought,1" | 7.47 | HC |
| SRR1761782 | leaf | "wild_type,control,1" | 6.75 | HC |
| SRR1761783 | leaf | "wild_type,control,1" | 6.07 | HC |
| SRR1761528 | leaf | drought | 8.21 | HC |
| SRR1761529 | leaf | drought | 7.46 | HC |
| SRR1761530 | leaf | control | 6.73 | HC |
| SRR1761531 | leaf | control | 6.07 | HC |
| SRR504365 | leaf | wt | 6.44 | HC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 4.53 | HC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 4.19 | HC |
| SRR6417968 | leaf | H2O_control | 4.25 | HC |
| SRR3209769 | leaf | Watered;Long_Day | 3.95 | HC |
| SRR3209770 | leaf | Watered;Long_Day | 3.50 | HC |
| SRR3209771 | leaf | Drought;Long_Day | 6.11 | HC |
| SRR3209772 | leaf | Drought;Long_Day | 5.40 | HC |
| SRR3209773 | leaf | Watered;Short_Day | 3.94 | HC |
| SRR3209775 | leaf | Drought;Short_Day | 5.14 | HC |
| SRR3209776 | leaf | Drought;Short_Day | 4.81 | HC |
| SRR3209778 | leaf | Drought;Long_Day | 6.22 | HC |
| SRR3209780 | leaf | Drought;Short_Day | 5.26 | HC |
| SRR8611900 | leaf | Non-inoculated | 3.78 | HC |
| SRR6216698 | leaf | nontransgenic rice plant | 6.23 | HC |
| SRR6216699 | leaf | nontransgenic rice plant | 5.42 | HC |
| SRR6502085 | leaf | 100 mM NaCl | 7.28 | HC |
| SRR6502086 | leaf | 100 mM NaCl | 7.10 | HC |
| SRR6502087 | leaf | 100 mM NaCl | 8.18 | HC |
| SRR6502088 | leaf | control | 6.20 | HC |
| SRR6502089 | leaf | control | 5.30 | HC |
| SRR6502090 | leaf | control | 4.11 | HC |
| SRR6502097 | leaf | 100 mM NaCl | 5.52 | HC |
| SRR6502098 | leaf | 100 mM NaCl | 7.20 | HC |
| SRR6502102 | leaf | control | 4.71 | HC |
| SRR5856928 | leaf | control | 5.82 | HC |
| SRR5856935 | leaf | control | 5.66 | HC |
| SRR5856938 | leaf | salt | 4.72 | HC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 3.74 | HC |
| SRR8582888 | panicle | AM | 5.89 | HC |
| SRR8582889 | panicle | AM | 2.76 | HC |
| SRR8582890 | panicle | AM | 5.43 | HC |
| SRR8582893 | panicle | PM | 4.93 | HC |
| SRR5110431 | panicle | Dawn | 5.26 | HC |
| SRR5110440 | panicle | Dawn + 7h | 5.71 | HC |
| SRR5110443 | panicle | Dawn + 10.5h | 4.25 | HC |
| SRR5110446 | panicle | Dusk | 5.79 | HC |
| SRR5110447 | panicle | Dusk | 4.47 | HC |
| SRR5110448 | panicle | Dusk | 6.45 | HC |
| SRR5110452 | panicle | Dawn + 14h | 6.82 | HC |
| SRR5110453 | panicle | Dawn + 17.5h | 3.49 | HC |
| SRR5110460 | panicle | Dawn + 21h | 5.81 | HC |
| SRR1213696 | endosprem | wt(milk grains) | 2.31 | HC |
| SRR1633185 | panicle | WT | 6.25 | HC |
| SRR5278374 | pistil | "Balilla,S1" | 10.00 | HC |
| SRR5278375 | pistil | "Balilla,S1" | 10.71 | HC |
| SRR5278376 | pistil | "Balilla,S2" | 11.75 | HC |
| SRR5278377 | pistil | "Balilla,S2" | 11.94 | HC |
| SRR5278378 | pistil | "Balilla,S3" | 11.41 | HC |
| SRR5278379 | pistil | "Balilla,S3" | 8.28 | HC |
| SRR5126147 | root | "mock,1_day" | 10.91 | HC |
| SRR5126148 | root | "mock,1_day" | 9.25 | HC |
| SRR5126149 | root | "mock,1_day" | 13.70 | HC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 11.68 | HC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 12.18 | HC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 8.61 | HC |
| SRR5126153 | root | "mock,7_days" | 11.62 | HC |
| SRR5126155 | root | "mock,7_days" | 12.33 | HC |
| SRR5126157 | root | "mock,7_days" | 15.25 | HC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 8.88 | HC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 9.60 | HC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 12.75 | HC |
| SRR5126165 | root | "mock,14_days" | 15.48 | HC |
| SRR5126167 | root | "mock,14_days" | 12.82 | HC |
| SRR5126169 | root | "mock,14_days" | 11.01 | HC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 7.81 | HC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 11.18 | HC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 6.49 | HC |
| SRR3472900 | root | nontransgenic_rice_plant | 3.46 | HC |
| SRR1213694 | root | wt | 5.09 | HC |
| SRR4947480 | root | control | 6.54 | HC |
| SRR4947481 | root | control | 7.24 | HC |
| SRR4947482 | root | Al | 7.28 | HC |
| SRR4947491 | root | Al | 6.28 | HC |
| SRR4947492 | root | Al | 8.54 | HC |
| SRR4947494 | root | control | 8.23 | HC |
| SRR4947499 | root | Al | 6.04 | HC |
| SRR4947500 | root | Al | 7.65 | HC |
| SRR4947501 | root | Al | 7.75 | HC |
| SRR4947502 | root | control | 8.41 | HC |
| SRR4947505 | root | control | 6.97 | HC |
| SRR6502091 | root | 100 mM NaCl | 9.76 | HC |
| SRR6502092 | root | 100 mM NaCl | 14.33 | HC |
| SRR6502093 | root | 100 mM NaCl | 13.18 | HC |
| SRR6502094 | root | control | 11.58 | HC |
| SRR6502095 | root | control | 9.57 | HC |
| SRR6502096 | root | control | 6.57 | HC |
| SRR6502104 | root | 100 mM NaCl | 15.63 | HC |
| SRR6502105 | root | 100 mM NaCl | 11.57 | HC |
| SRR6502106 | root | control | 10.17 | HC |
| SRR6502107 | root | control | 7.34 | HC |
| SRR6502108 | root | control | 6.37 | HC |
| SRR1740434 | root_differentiation_zone | wt | 8.90 | HC |
| SRR1740435 | root_differentiation_zone | wt | 6.55 | HC |
| SRR1740436 | root_differentiation_zone | wt | 5.60 | HC |
| SRR1740431 | root_elongation_zone | wt | 6.67 | HC |
| SRR1740432 | root_elongation_zone | wt | 5.20 | HC |
| SRR1740433 | root_elongation_zone | wt | 4.86 | HC |
| SRR6441554 | seedling | wild_type | 3.25 | HC |
| SRR6441555 | seedling | wild_type | 3.37 | HC |
| SRR2154086 | seedling | wt | 6.67 | HC |
| SRR2154087 | seedling | wt | 7.06 | HC |
| SRR3098741 | seedling | wt | 5.17 | HC |
| SRR3098742 | seedling | wt | 5.29 | HC |
| SRR3098743 | seedling | wt | 4.83 | HC |
| SRR2857719 | seedling | drought_stress_0h | 10.33 | HC |
| SRR2857720 | seedling | drought_stress_1h | 10.89 | HC |
| SRR2857721 | seedling | drought_stress_6h | 12.62 | HC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 7.58 | HC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 7.24 | HC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 9.00 | HC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 7.75 | HC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 6.61 | HC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 6.73 | HC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 5.59 | HC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 6.39 | HC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 8.20 | HC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 7.79 | HC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 6.02 | HC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 6.14 | HC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 3.64 | HC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 5.26 | HC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 3.42 | HC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 3.79 | HC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 5.28 | HC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 6.29 | HC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 6.26 | HC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 5.80 | HC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 4.10 | HC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 3.66 | HC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 3.65 | HC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 6.54 | HC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 5.53 | HC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 5.19 | HC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 5.15 | HC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 5.46 | HC |