| SRR4457249 | 2nd_leaf | DAH4 | 13.97 | HC |
| SRR4457250 | 2nd_leaf | DAH4 | 7.38 | HC |
| SRR4457252 | 2nd_leaf | DAH12 | 7.39 | HC |
| SRR4457254 | 2nd_leaf | DAH12 | 7.26 | HC |
| SRR4457255 | 2nd_leaf | DAH20 | 17.23 | HC |
| SRR4457256 | 2nd_leaf | DAH20 | 21.40 | HC |
| SRR4457257 | 2nd_leaf | DAH20 | 8.51 | HC |
| SRR4457258 | 2nd_leaf | DAH28 | 19.04 | HC |
| SRR4457259 | 2nd_leaf | DAH28 | 16.46 | HC |
| SRR4457260 | 2nd_leaf | DAH28 | 13.43 | HC |
| SRR4457261 | 2nd_leaf | DAH36 | 8.61 | HC |
| SRR4457263 | 2nd_leaf | DAH36 | 12.23 | HC |
| SRR4457264 | 2nd_leaf | DAH44 | 18.59 | HC |
| SRR4457266 | 2nd_leaf | DAH44 | 8.02 | HC |
| SRR3745125 | anther | wt | 7.32 | HC |
| SRR3745127 | anther | wt | 7.12 | HC |
| SRR358795 | callus | wt | 34.27 | HC |
| SRR358796 | callus | wt | 36.31 | HC |
| SRR358797 | callus | wt | 33.50 | HC |
| SRR358798 | callus | wt | 36.24 | HC |
| SRR6320498 | carpel | wt | 11.64 | HC |
| SRR5560727 | caryopsis | wild_type | 17.46 | HC |
| SRR5560729 | caryopsis | wild_type | 15.56 | HC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 6.85 | HC |
| SRR7265373 | embryo | dry seed 0 h | 10.32 | HC |
| SRR7265374 | embryo | dry seed 0 h | 14.23 | HC |
| SRR7265376 | embryo | 1hA | 3.68 | HC |
| SRR7265377 | embryo | 1hA | 8.84 | HC |
| SRR7265378 | embryo | 1hA | 5.48 | HC |
| SRR7265379 | embryo | 1hN | 12.29 | HC |
| SRR7265380 | embryo | 1hN | 12.97 | HC |
| SRR7265381 | embryo | 1hN | 9.83 | HC |
| SRR7265383 | embryo | 3hA | 6.11 | HC |
| SRR7265384 | embryo | 3hA | 5.96 | HC |
| SRR7265385 | embryo | 3hN | 7.27 | HC |
| SRR7265386 | embryo | 3hN | 9.36 | HC |
| SRR7265387 | embryo | 3hN | 6.35 | HC |
| SRR2338866 | endosprem | control | 8.19 | HC |
| SRR4457231 | flag_leaf | DAH4 | 4.75 | HC |
| SRR4457234 | flag_leaf | DAH12 | 13.65 | HC |
| SRR4457235 | flag_leaf | DAH12 | 16.04 | HC |
| SRR4457236 | flag_leaf | DAH12 | 15.79 | HC |
| SRR4457237 | flag_leaf | DAH20 | 20.07 | HC |
| SRR4457238 | flag_leaf | DAH20 | 19.66 | HC |
| SRR4457239 | flag_leaf | DAH20 | 13.47 | HC |
| SRR4457240 | flag_leaf | DAH28 | 19.91 | HC |
| SRR4457241 | flag_leaf | DAH28 | 25.46 | HC |
| SRR4457242 | flag_leaf | DAH28 | 20.13 | HC |
| SRR4457243 | flag_leaf | DAH36 | 5.55 | HC |
| SRR4457244 | flag_leaf | DAH36 | 20.07 | HC |
| SRR4457246 | flag_leaf | DAH44 | 21.66 | HC |
| SRR4457248 | flag_leaf | DAH44 | 23.51 | HC |
| SRR1213691 | flower | wt | 5.98 | HC |
| SRR8060835 | leaf | wild_type | 3.37 | HC |
| SRR8060836 | leaf | wild_type | 4.00 | HC |
| SRR8060837 | leaf | wild_type | 5.38 | HC |
| SRR8240819 | leaf | wild_type | 2.58 | HC |
| SRR8240820 | leaf | wild_type | 2.85 | HC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 9.63 | HC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 10.22 | HC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 9.35 | HC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 8.55 | HC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 8.11 | HC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 10.80 | HC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 12.87 | HC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 8.80 | HC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 6.29 | HC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 8.34 | HC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 13.42 | HC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 6.43 | HC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 5.38 | HC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 6.93 | HC |
| SRR1761788 | leaf | "wild_type,drought,2" | 18.78 | HC |
| SRR1761790 | leaf | "wild_type,control,2" | 49.46 | HC |
| SRR1761780 | leaf | "wild_type,drought,1" | 18.78 | HC |
| SRR1761782 | leaf | "wild_type,control,1" | 49.46 | HC |
| SRR1761528 | leaf | drought | 18.78 | HC |
| SRR1761530 | leaf | control | 49.46 | HC |
| SRR504365 | leaf | wt | 4.50 | HC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 11.44 | HC |
| SRR3209772 | leaf | Drought;Long_Day | 25.92 | HC |
| SRR3209775 | leaf | Drought;Short_Day | 8.41 | HC |
| SRR3209780 | leaf | Drought;Short_Day | 5.06 | HC |
| SRR8611901 | leaf | Non-inoculated | 4.23 | HC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 7.35 | HC |
| SRR6502087 | leaf | 100 mM NaCl | 7.56 | HC |
| SRR6502088 | leaf | control | 29.13 | HC |
| SRR6502090 | leaf | control | 33.64 | HC |
| SRR5856927 | leaf | control | 2.88 | HC |
| SRR6053400 | leaf | Paclobutrazol (PB) | 10.94 | HC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 3.24 | HC |
| SRR6168979 | leaf | none (control) | 4.15 | HC |
| SRR6168980 | leaf | none (control) | 1.83 | HC |
| SRR6168981 | leaf | none (control) | 9.77 | HC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 4.18 | HC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 6.06 | HC |
| SRR5110429 | panicle | Dawn | 10.48 | HC |
| SRR5110435 | panicle | Dawn + 3.5h | 7.79 | HC |
| SRR5110437 | panicle | Dawn + 7h | 16.60 | HC |
| SRR5110439 | panicle | Dawn + 7h | 14.05 | HC |
| SRR5110442 | panicle | Dawn + 10.5h | 12.48 | HC |
| SRR5110444 | panicle | Dawn + 10.5h | 20.47 | HC |
| SRR5110445 | panicle | Dusk | 13.28 | HC |
| SRR5110447 | panicle | Dusk | 4.53 | HC |
| SRR5110448 | panicle | Dusk | 22.17 | HC |
| SRR5110451 | panicle | Dawn + 14h | 13.46 | HC |
| SRR5110453 | panicle | Dawn + 17.5h | 10.53 | HC |
| SRR5110459 | panicle | Dawn + 21h | 4.71 | HC |
| SRR1213697 | endosprem | wt(mature seeds) | 10.14 | HC |
| SRR1633182 | panicle | WT | 52.74 | HC |
| SRR1633185 | panicle | WT | 69.91 | HC |
| SRR5278374 | pistil | "Balilla,S1" | 3.78 | HC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 5.84 | HC |
| SRR5126153 | root | "mock,7_days" | 9.50 | HC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 12.12 | HC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 5.11 | HC |
| SRR5126167 | root | "mock,14_days" | 4.71 | HC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 6.64 | HC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 5.70 | HC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 6.13 | HC |
| SRR3472897 | root | nontransgenic_rice_plant | 5.25 | HC |
| SRR6502091 | root | 100 mM NaCl | 9.35 | HC |
| SRR6502092 | root | 100 mM NaCl | 24.68 | HC |
| SRR6502094 | root | control | 21.18 | HC |
| SRR6502096 | root | control | 20.18 | HC |
| SRR6502103 | root | 100 mM NaCl | 16.35 | HC |
| SRR6502105 | root | 100 mM NaCl | 9.70 | HC |
| SRR1740434 | root_differentiation_zone | wt | 3.84 | HC |
| SRR1740435 | root_differentiation_zone | wt | 7.28 | HC |
| SRR1740428 | root_meristematic_zone | wt | 25.90 | HC |
| SRR1740430 | root_meristematic_zone | wt | 12.29 | HC |
| SRR6441555 | seedling | wild_type | 7.89 | HC |
| SRR2154082 | seedling | wt | 3.92 | HC |
| SRR2154083 | seedling | wt | 10.77 | HC |
| SRR2857720 | seedling | drought_stress_1h | 25.05 | HC |
| SRR2857721 | seedling | drought_stress_6h | 5.91 | HC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 40.58 | HC |
| SRR358791 | seedling | wt | 19.81 | HC |
| SRR358792 | seedling | wt | 27.47 | HC |
| SRR358793 | seedling | wt | 66.38 | HC |
| SRR358794 | seedling | wt | 72.63 | HC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 7.86 | HC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 7.16 | HC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 3.60 | HC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 11.19 | HC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 8.10 | HC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 23.53 | HC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 24.11 | HC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 25.67 | HC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 26.87 | HC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 25.18 | HC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 24.32 | HC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 24.13 | HC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 26.29 | HC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 30.13 | HC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 19.68 | HC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 23.05 | HC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 32.10 | HC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 3.35 | HC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 8.85 | HC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 6.97 | HC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 4.67 | HC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 3.53 | HC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 3.62 | HC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 5.22 | HC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 3.50 | HC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 7.28 | HC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 16.92 | HC |
| SRR1617550 | shoot_apical_meristem | no collect | 22.05 | HC |
| SRR1617553 | shoot_apical_meristem | no collect | 22.22 | HC |
| SRR1617556 | shoot_apical_meristem | no collect | 17.22 | HC |
| SRR1617557 | shoot_apical_meristem | no collect | 25.04 | HC |
| SRR1617558 | shoot_apical_meristem | no collect | 24.89 | HC |
| SRR1617559 | shoot_apical_meristem | no collect | 17.87 | HC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 16.95 | HC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 9.42 | HC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 5.52 | HC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 4.86 | HC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 17.63 | HC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 5.66 | HC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 3.94 | HC |