| SRR4457260 | 2nd_leaf | DAH28 | 4.16 | HC |
| SRR4457265 | 2nd_leaf | DAH44 | 8.83 | HC |
| SRR3745126 | anther | wt | 6.59 | HC |
| SRR358795 | callus | wt | 18.22 | HC |
| SRR358796 | callus | wt | 14.19 | HC |
| SRR5560727 | caryopsis | wild_type | 7.29 | HC |
| SRR5560728 | caryopsis | wild_type | 11.35 | HC |
| SRR5560729 | caryopsis | wild_type | 12.82 | HC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 10.70 | HC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 9.53 | HC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 8.07 | HC |
| SRR4947495 | root | control | 6.68 | HC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 6.69 | HC |
| SRR7265400 | coleoptile | 2dA | 5.03 | HC |
| SRR7265401 | coleoptile | 2dA | 4.82 | HC |
| SRR7265402 | coleoptile | 2dA | 5.57 | HC |
| SRR7265403 | coleoptile | 2dN | 4.77 | HC |
| SRR7265406 | coleoptile | 3dA | 5.31 | HC |
| SRR7265407 | coleoptile | 3dA | 6.70 | HC |
| SRR7265408 | coleoptile | 3dA | 3.20 | HC |
| SRR7265412 | coleoptile | 4dA | 4.89 | HC |
| SRR7265419 | coleoptile | 3dN1dA | 5.65 | HC |
| SRR7265420 | coleoptile | 3dN1dA | 5.31 | HC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 6.29 | HC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 5.77 | HC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 5.44 | HC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 5.05 | HC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 5.84 | HC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 5.65 | HC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 7.30 | HC |
| SRR7265378 | embryo | 1hA | 3.50 | HC |
| SRR7265388 | embryo | 12hA | 6.02 | HC |
| SRR7265389 | embryo | 12hA | 7.53 | HC |
| SRR7265390 | embryo | 12hA | 6.04 | HC |
| SRR7265392 | embryo | 12hN | 5.18 | HC |
| SRR7265393 | embryo | 12hN | 5.21 | HC |
| SRR7265394 | embryo | 24hA | 7.03 | HC |
| SRR7265396 | embryo | 24hA | 6.90 | HC |
| SRR7265398 | embryo | 24hN | 6.30 | HC |
| SRR4457235 | flag_leaf | DAH12 | 4.52 | HC |
| SRR4457236 | flag_leaf | DAH12 | 4.02 | HC |
| SRR4457237 | flag_leaf | DAH20 | 3.65 | HC |
| SRR4457246 | flag_leaf | DAH44 | 5.11 | HC |
| SRR1213690 | flower | wt(flower buds) | 5.24 | HC |
| SRR1213691 | flower | wt | 7.94 | HC |
| SRR8240819 | leaf | wild_type | 2.89 | HC |
| SRR8240820 | leaf | wild_type | 2.95 | HC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 4.50 | HC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 4.26 | HC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 5.01 | HC |
| SRR6417969 | leaf | H2O_control | 3.85 | HC |
| SRR3209769 | leaf | Watered;Long_Day | 4.87 | HC |
| SRR3209770 | leaf | Watered;Long_Day | 3.55 | HC |
| SRR3209773 | leaf | Watered;Short_Day | 5.09 | HC |
| SRR8611900 | leaf | Non-inoculated | 7.75 | HC |
| SRR8611901 | leaf | Non-inoculated | 6.44 | HC |
| SRR8611902 | leaf | Non-inoculated | 6.94 | HC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 4.21 | HC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 4.51 | HC |
| SRR6216698 | leaf | nontransgenic rice plant | 4.31 | HC |
| SRR6216699 | leaf | nontransgenic rice plant | 4.20 | HC |
| SRR1213693 | leaf | wt | 3.97 | HC |
| SRR6502088 | leaf | control | 4.56 | HC |
| SRR5856929 | leaf | control | 2.60 | HC |
| SRR5856930 | leaf | salt | 2.84 | HC |
| SRR5856935 | leaf | control | 2.94 | HC |
| SRR5856936 | leaf | salt | 2.23 | HC |
| SRR5856938 | leaf | salt | 2.53 | HC |
| SRR6168973 | leaf | none (control) | 4.49 | HC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 8.53 | HC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 2.70 | HC |
| SRR5110429 | panicle | Dawn | 5.40 | HC |
| SRR5110431 | panicle | Dawn | 6.58 | HC |
| SRR5110432 | panicle | Dawn | 11.78 | HC |
| SRR5110433 | panicle | Dawn + 3.5h | 8.60 | HC |
| SRR5110434 | panicle | Dawn + 3.5h | 6.22 | HC |
| SRR5110435 | panicle | Dawn + 3.5h | 6.28 | HC |
| SRR5110436 | panicle | Dawn + 3.5h | 5.33 | HC |
| SRR5110437 | panicle | Dawn + 7h | 7.05 | HC |
| SRR5110438 | panicle | Dawn + 7h | 15.50 | HC |
| SRR5110440 | panicle | Dawn + 7h | 12.06 | HC |
| SRR5110441 | panicle | Dawn + 10.5h | 5.52 | HC |
| SRR5110442 | panicle | Dawn + 10.5h | 8.74 | HC |
| SRR5110443 | panicle | Dawn + 10.5h | 9.71 | HC |
| SRR5110444 | panicle | Dawn + 10.5h | 5.56 | HC |
| SRR5110445 | panicle | Dusk | 8.09 | HC |
| SRR5110446 | panicle | Dusk | 17.42 | HC |
| SRR5110447 | panicle | Dusk | 17.47 | HC |
| SRR5110448 | panicle | Dusk | 15.04 | HC |
| SRR5110450 | panicle | Dawn + 14h | 6.44 | HC |
| SRR5110451 | panicle | Dawn + 14h | 9.37 | HC |
| SRR5110452 | panicle | Dawn + 14h | 9.44 | HC |
| SRR5110453 | panicle | Dawn + 17.5h | 9.30 | HC |
| SRR5110454 | panicle | Dawn + 17.5h | 6.50 | HC |
| SRR5110455 | panicle | Dawn + 17.5h | 9.76 | HC |
| SRR5110456 | panicle | Dawn + 17.5h | 13.01 | HC |
| SRR5110457 | panicle | Dawn + 21h | 4.22 | HC |
| SRR5110458 | panicle | Dawn + 21h | 5.17 | HC |
| SRR5110459 | panicle | Dawn + 21h | 6.66 | HC |
| SRR5110460 | panicle | Dawn + 21h | 6.14 | HC |
| SRR1213696 | endosprem | wt(milk grains) | 3.57 | HC |
| SRR5278374 | pistil | "Balilla,S1" | 6.78 | HC |
| SRR5278375 | pistil | "Balilla,S1" | 7.45 | HC |
| SRR5278376 | pistil | "Balilla,S2" | 8.08 | HC |
| SRR5278377 | pistil | "Balilla,S2" | 7.02 | HC |
| SRR5278378 | pistil | "Balilla,S3" | 17.56 | HC |
| SRR5278379 | pistil | "Balilla,S3" | 19.48 | HC |
| SRR5126147 | root | "mock,1_day" | 4.40 | HC |
| SRR5126148 | root | "mock,1_day" | 5.01 | HC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 5.00 | HC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 8.38 | HC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 6.50 | HC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 8.86 | HC |
| SRR5126169 | root | "mock,14_days" | 5.04 | HC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 6.40 | HC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 5.89 | HC |
| SRR3472897 | root | nontransgenic_rice_plant | 4.80 | HC |
| SRR3472900 | root | nontransgenic_rice_plant | 2.96 | HC |
| SRR1213694 | root | wt | 6.69 | HC |
| SRR1213695 | root | wt | 4.49 | HC |
| SRR4947478 | root | control | 7.52 | HC |
| SRR4947479 | root | control | 8.84 | HC |
| SRR4947480 | root | control | 6.58 | HC |
| SRR4947482 | root | Al | 7.64 | HC |
| SRR4947483 | root | Al | 4.66 | HC |
| SRR4947484 | root | Al | 11.50 | HC |
| SRR4947487 | root | control | 11.59 | HC |
| SRR4947488 | root | control | 6.50 | HC |
| SRR4947490 | root | Al | 4.51 | HC |
| SRR4947491 | root | Al | 8.42 | HC |
| SRR4947492 | root | Al | 6.00 | HC |
| SRR4947493 | root | Al | 6.85 | HC |
| SRR4947497 | root | control | 6.94 | HC |
| SRR4947498 | root | Al | 11.43 | HC |
| SRR4947499 | root | Al | 7.05 | HC |
| SRR4947500 | root | Al | 6.87 | HC |
| SRR4947502 | root | control | 6.36 | HC |
| SRR4947506 | root | Al | 4.75 | HC |
| SRR4947507 | root | Al | 6.70 | HC |
| SRR6502104 | root | 100 mM NaCl | 5.85 | HC |
| SRR6502105 | root | 100 mM NaCl | 4.68 | HC |
| SRR1740435 | root_differentiation_zone | wt | 7.74 | HC |
| SRR1740431 | root_elongation_zone | wt | 7.12 | HC |
| SRR1740432 | root_elongation_zone | wt | 9.74 | HC |
| SRR1740433 | root_elongation_zone | wt | 5.51 | HC |
| SRR1740428 | root_meristematic_zone | wt | 5.54 | HC |
| SRR1740429 | root_meristematic_zone | wt | 5.84 | HC |
| SRR1740430 | root_meristematic_zone | wt | 11.06 | HC |
| SRR6441555 | seedling | wild_type | 3.55 | HC |
| SRR2154084 | seedling | wt | 4.76 | HC |
| SRR2154085 | seedling | wt | 6.90 | HC |
| SRR358793 | seedling | wt | 9.50 | HC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 4.96 | HC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 4.61 | HC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 7.93 | HC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 9.50 | HC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 13.94 | HC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 12.89 | HC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 4.28 | HC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 6.40 | HC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 9.49 | HC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 6.54 | HC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 7.17 | HC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 20.18 | HC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 12.16 | HC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 16.39 | HC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 4.69 | HC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 10.03 | HC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 8.10 | HC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 7.54 | HC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 9.56 | HC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 9.55 | HC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 42.93 | HC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 48.76 | HC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 39.49 | HC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 116.28 | HC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 37.77 | HC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 126.69 | HC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 35.52 | HC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 49.31 | HC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 43.85 | HC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 38.83 | HC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 29.65 | HC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 69.82 | HC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 49.66 | HC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 89.57 | HC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 76.96 | HC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 98.74 | HC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 86.55 | HC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 76.09 | HC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 63.79 | HC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 42.75 | HC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 70.26 | HC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 70.37 | HC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 92.96 | HC |
| SRR1617553 | shoot_apical_meristem | no collect | 18.56 | HC |
| SRR1617554 | shoot_apical_meristem | no collect | 12.04 | HC |
| SRR1617556 | shoot_apical_meristem | no collect | 16.13 | HC |
| SRR1617557 | shoot_apical_meristem | no collect | 13.25 | HC |
| SRR1617558 | shoot_apical_meristem | no collect | 9.77 | HC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 17.80 | HC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 18.25 | HC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 21.53 | HC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 16.81 | HC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 17.88 | HC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 15.85 | HC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 5.47 | HC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 6.53 | HC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 4.62 | HC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 3.91 | HC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 6.18 | HC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 4.52 | HC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 4.04 | HC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 4.92 | HC |