| SRR4457251 | 2nd_leaf | DAH4 | 6.57 | HC |
| SRR4457252 | 2nd_leaf | DAH12 | 60.41 | HC |
| SRR4457253 | 2nd_leaf | DAH12 | 7.37 | HC |
| SRR4457255 | 2nd_leaf | DAH20 | 80.65 | HC |
| SRR4457257 | 2nd_leaf | DAH20 | 23.15 | HC |
| SRR3745125 | anther | wt | 15.11 | HC |
| SRR3745126 | anther | wt | 11.97 | HC |
| SRR3745127 | anther | wt | 12.47 | HC |
| SRR358795 | callus | wt | 85.07 | HC |
| SRR358796 | callus | wt | 82.34 | HC |
| SRR358797 | callus | wt | 92.89 | HC |
| SRR358798 | callus | wt | 78.31 | HC |
| SRR5560729 | caryopsis | wild_type | 12.66 | HC |
| SRR7265400 | coleoptile | 2dA | 8.13 | HC |
| SRR7265405 | coleoptile | 2dN | 5.40 | HC |
| SRR7265409 | coleoptile | 3dN | 5.00 | HC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 9.36 | HC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 10.65 | HC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 10.71 | HC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 7.65 | HC |
| SRR7265373 | embryo | dry seed 0 h | 13.90 | HC |
| SRR7265374 | embryo | dry seed 0 h | 4.91 | HC |
| SRR7265376 | embryo | 1hA | 31.89 | HC |
| SRR7265377 | embryo | 1hA | 7.96 | HC |
| SRR7265378 | embryo | 1hA | 4.84 | HC |
| SRR7265379 | embryo | 1hN | 13.26 | HC |
| SRR7265380 | embryo | 1hN | 4.15 | HC |
| SRR7265385 | embryo | 3hN | 16.85 | HC |
| SRR7265386 | embryo | 3hN | 5.05 | HC |
| SRR7265387 | embryo | 3hN | 6.94 | HC |
| SRR7265394 | embryo | 24hA | 16.03 | HC |
| SRR7265395 | embryo | 24hA | 7.24 | HC |
| SRR976168 | flag_leaf | wild_type | 17.86 | HC |
| SRR4457235 | flag_leaf | DAH12 | 46.76 | HC |
| SRR4457237 | flag_leaf | DAH20 | 59.51 | HC |
| SRR4457238 | flag_leaf | DAH20 | 7.80 | HC |
| SRR4457240 | flag_leaf | DAH28 | 19.10 | HC |
| SRR4457241 | flag_leaf | DAH28 | 60.51 | HC |
| SRR4457242 | flag_leaf | DAH28 | 46.19 | HC |
| SRR4457246 | flag_leaf | DAH44 | 12.45 | HC |
| SRR4457247 | flag_leaf | DAH44 | 10.38 | HC |
| SRR4457248 | flag_leaf | DAH44 | 75.99 | HC |
| SRR1213690 | flower | wt(flower buds) | 11.12 | HC |
| SRR1213691 | flower | wt | 12.00 | HC |
| SRR8060836 | leaf | wild_type | 3.98 | HC |
| SRR8060837 | leaf | wild_type | 11.25 | HC |
| SRR8240824 | leaf | wild_type | 19.78 | HC |
| SRR8240825 | leaf | wild_type | 15.16 | HC |
| SRR8240826 | leaf | wild_type | 22.30 | HC |
| SRR8240818 | leaf | wild_type | 13.63 | HC |
| SRR8240819 | leaf | wild_type | 16.49 | HC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 19.57 | HC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 11.42 | HC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 16.51 | HC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 7.07 | HC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 32.45 | HC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 29.06 | HC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 26.44 | HC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 6.04 | HC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 17.96 | HC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 17.85 | HC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 6.29 | HC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 36.13 | HC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 15.79 | HC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 23.01 | HC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 24.33 | HC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 5.53 | HC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 18.17 | HC |
| SRR1761788 | leaf | "wild_type,drought,2" | 59.27 | HC |
| SRR1761791 | leaf | "wild_type,control,2" | 49.53 | HC |
| SRR1761780 | leaf | "wild_type,drought,1" | 59.26 | HC |
| SRR1761783 | leaf | "wild_type,control,1" | 49.53 | HC |
| SRR1761528 | leaf | drought | 59.26 | HC |
| SRR1761531 | leaf | control | 49.53 | HC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 4.54 | HC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 53.78 | HC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 36.79 | HC |
| SRR6417968 | leaf | H2O_control | 17.92 | HC |
| SRR3209770 | leaf | Watered;Long_Day | 12.65 | HC |
| SRR3209771 | leaf | Drought;Long_Day | 47.38 | HC |
| SRR3209774 | leaf | Watered;Short_Day | 14.17 | HC |
| SRR3209778 | leaf | Drought;Long_Day | 5.51 | HC |
| SRR3209779 | leaf | Watered;Short_Day | 3.92 | HC |
| SRR8611902 | leaf | Non-inoculated | 5.90 | HC |
| SRR6216698 | leaf | nontransgenic rice plant | 18.72 | HC |
| SRR6216699 | leaf | nontransgenic rice plant | 20.66 | HC |
| SRR1213692 | leaf | wt | 21.67 | HC |
| SRR6502085 | leaf | 100 mM NaCl | 8.23 | HC |
| SRR6502088 | leaf | control | 66.48 | HC |
| SRR6502089 | leaf | control | 51.34 | HC |
| SRR6502097 | leaf | 100 mM NaCl | 5.30 | HC |
| SRR6502099 | leaf | 100 mM NaCl | 25.29 | HC |
| SRR6502100 | leaf | control | 56.09 | HC |
| SRR6502101 | leaf | control | 56.32 | HC |
| SRR6502102 | leaf | control | 63.18 | HC |
| SRR5856931 | leaf | salt | 5.50 | HC |
| SRR5856933 | leaf | control | 4.54 | HC |
| SRR5856937 | leaf | salt | 12.76 | HC |
| SRR6053392 | leaf | ethanol solvent (untreated control) | 24.22 | HC |
| SRR6053393 | leaf | ethanol solvent (untreated control) | 26.55 | HC |
| SRR6053394 | leaf | ethanol solvent (untreated control) | 27.16 | HC |
| SRR6053395 | leaf | gibberellic acid (GA) | 26.48 | HC |
| SRR6053396 | leaf | gibberellic acid (GA) | 27.83 | HC |
| SRR6053397 | leaf | gibberellic acid (GA) | 25.77 | HC |
| SRR6053398 | leaf | Paclobutrazol (PB) | 25.87 | HC |
| SRR6053399 | leaf | Paclobutrazol (PB) | 29.05 | HC |
| SRR6053400 | leaf | Paclobutrazol (PB) | 30.68 | HC |
| SRR6168973 | leaf | none (control) | 8.00 | HC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 26.58 | HC |
| SRR6168979 | leaf | none (control) | 33.64 | HC |
| SRR6168980 | leaf | none (control) | 18.82 | HC |
| SRR6168981 | leaf | none (control) | 14.49 | HC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 4.24 | HC |
| SRR8582890 | panicle | AM | 4.12 | HC |
| SRR8582891 | panicle | PM | 17.29 | HC |
| SRR8582892 | panicle | PM | 9.13 | HC |
| SRR5110433 | panicle | Dawn + 3.5h | 6.27 | HC |
| SRR5110444 | panicle | Dawn + 10.5h | 16.52 | HC |
| SRR5110445 | panicle | Dusk | 8.57 | HC |
| SRR5110446 | panicle | Dusk | 5.12 | HC |
| SRR5110456 | panicle | Dawn + 17.5h | 5.70 | HC |
| SRR5110457 | panicle | Dawn + 21h | 13.03 | HC |
| SRR5110459 | panicle | Dawn + 21h | 17.96 | HC |
| SRR5110460 | panicle | Dawn + 21h | 68.22 | HC |
| SRR1213696 | endosprem | wt(milk grains) | 4.45 | HC |
| SRR1633182 | panicle | WT | 50.43 | HC |
| SRR1633185 | panicle | WT | 65.31 | HC |
| SRR5278374 | pistil | "Balilla,S1" | 24.47 | HC |
| SRR5278375 | pistil | "Balilla,S1" | 10.79 | HC |
| SRR5278376 | pistil | "Balilla,S2" | 33.61 | HC |
| SRR5278377 | pistil | "Balilla,S2" | 41.27 | HC |
| SRR5126147 | root | "mock,1_day" | 6.38 | HC |
| SRR5126148 | root | "mock,1_day" | 6.79 | HC |
| SRR5126149 | root | "mock,1_day" | 25.87 | HC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 5.21 | HC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 21.94 | HC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 7.59 | HC |
| SRR5126155 | root | "mock,7_days" | 17.68 | HC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 8.75 | HC |
| SRR5126165 | root | "mock,14_days" | 7.22 | HC |
| SRR5126169 | root | "mock,14_days" | 5.07 | HC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 22.40 | HC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 7.62 | HC |
| SRR4947480 | root | control | 24.96 | HC |
| SRR4947485 | root | Al | 7.18 | HC |
| SRR4947489 | root | control | 8.69 | HC |
| SRR4947490 | root | Al | 31.43 | HC |
| SRR4947492 | root | Al | 27.61 | HC |
| SRR4947497 | root | control | 29.06 | HC |
| SRR4947505 | root | control | 6.72 | HC |
| SRR4947507 | root | Al | 29.55 | HC |
| SRR4947508 | root | Al | 28.81 | HC |
| SRR6502091 | root | 100 mM NaCl | 9.21 | HC |
| SRR6502092 | root | 100 mM NaCl | 90.51 | HC |
| SRR6502094 | root | control | 64.22 | HC |
| SRR6502105 | root | 100 mM NaCl | 19.59 | HC |
| SRR6502106 | root | control | 69.40 | HC |
| SRR6502107 | root | control | 10.83 | HC |
| SRR1740428 | root_meristematic_zone | wt | 44.62 | HC |
| SRR6441554 | seedling | wild_type | 7.25 | HC |
| SRR2154082 | seedling | wt | 5.45 | HC |
| SRR2154083 | seedling | wt | 18.37 | HC |
| SRR3098741 | seedling | wt | 3.02 | HC |
| SRR3098742 | seedling | wt | 13.73 | HC |
| SRR3098743 | seedling | wt | 36.32 | HC |
| SRR2857720 | seedling | drought_stress_1h | 15.05 | HC |
| SRR2857721 | seedling | drought_stress_6h | 13.41 | HC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 31.73 | HC |
| SRR358791 | seedling | wt | 68.53 | HC |
| SRR358792 | seedling | wt | 71.85 | HC |
| SRR358793 | seedling | wt | 16.26 | HC |
| SRR358794 | seedling | wt | 15.67 | HC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 14.70 | HC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 21.95 | HC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 16.72 | HC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 12.29 | HC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 14.36 | HC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 17.59 | HC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 10.90 | HC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 9.38 | HC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 26.62 | HC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 17.92 | HC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 6.07 | HC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 7.20 | HC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 5.71 | HC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 7.00 | HC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 5.97 | HC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 6.18 | HC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 5.95 | HC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 5.31 | HC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 6.84 | HC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 6.96 | HC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 8.37 | HC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 10.58 | HC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 10.10 | HC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 40.06 | HC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 11.18 | HC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 2.80 | HC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 3.33 | HC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 23.58 | HC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 5.57 | HC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 9.51 | HC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 61.33 | HC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 44.66 | HC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 54.56 | HC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 49.76 | HC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 60.89 | HC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 49.08 | HC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 59.60 | HC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 54.95 | HC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 50.02 | HC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 55.34 | HC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 36.03 | HC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 50.18 | HC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 25.13 | HC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 55.81 | HC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 46.80 | HC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 46.57 | HC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 55.13 | HC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 54.27 | HC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 63.44 | HC |
| SRR1617553 | shoot_apical_meristem | no collect | 70.33 | HC |
| SRR1617554 | shoot_apical_meristem | no collect | 104.33 | HC |
| SRR1617556 | shoot_apical_meristem | no collect | 77.55 | HC |
| SRR1617557 | shoot_apical_meristem | no collect | 97.14 | HC |
| SRR1617558 | shoot_apical_meristem | no collect | 90.61 | HC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 4.17 | HC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 14.24 | HC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 15.86 | HC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 18.30 | HC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 10.67 | HC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 9.18 | HC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 30.23 | HC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 12.76 | HC |