| SRR358796 | callus | wt | 10.17 | HC |
| SRR5560727 | caryopsis | wild_type | 11.44 | HC |
| SRR5560728 | caryopsis | wild_type | 12.56 | HC |
| SRR5560729 | caryopsis | wild_type | 15.69 | HC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 11.43 | HC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 8.53 | HC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 8.23 | HC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 23.92 | HC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 41.09 | HC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 6.66 | HC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 6.89 | HC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 9.00 | HC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 7.83 | HC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 8.37 | HC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 21.05 | HC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 9.37 | HC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 12.29 | HC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 30.93 | HC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 10.87 | HC |
| SRR2338869 | endosprem | high_temperature | 4.11 | HC |
| SRR1213690 | flower | wt(flower buds) | 10.86 | HC |
| SRR1213691 | flower | wt | 11.64 | HC |
| SRR8240824 | leaf | wild_type | 5.61 | HC |
| SRR8240825 | leaf | wild_type | 4.14 | HC |
| SRR8240826 | leaf | wild_type | 5.18 | HC |
| SRR8240820 | leaf | wild_type | 2.56 | HC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 11.45 | HC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 5.42 | HC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 9.32 | HC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 8.41 | HC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 7.06 | HC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 5.51 | HC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 3.94 | HC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 3.99 | HC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 3.95 | HC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 5.10 | HC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 5.53 | HC |
| SRR6417967 | leaf | H2O_control | 5.67 | HC |
| SRR6417968 | leaf | H2O_control | 5.53 | HC |
| SRR6417969 | leaf | H2O_control | 5.88 | HC |
| SRR3209771 | leaf | Drought;Long_Day | 11.33 | HC |
| SRR3209772 | leaf | Drought;Long_Day | 9.28 | HC |
| SRR3209773 | leaf | Watered;Short_Day | 4.27 | HC |
| SRR3209775 | leaf | Drought;Short_Day | 10.54 | HC |
| SRR3209776 | leaf | Drought;Short_Day | 9.47 | HC |
| SRR3209777 | leaf | Watered;Long_Day | 4.36 | HC |
| SRR3209778 | leaf | Drought;Long_Day | 10.72 | HC |
| SRR3209779 | leaf | Watered;Short_Day | 3.69 | HC |
| SRR3209780 | leaf | Drought;Short_Day | 9.74 | HC |
| SRR8611900 | leaf | Non-inoculated | 11.09 | HC |
| SRR8611901 | leaf | Non-inoculated | 10.58 | HC |
| SRR8611902 | leaf | Non-inoculated | 11.23 | HC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 11.07 | HC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 11.22 | HC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 8.66 | HC |
| SRR6216698 | leaf | nontransgenic rice plant | 13.23 | HC |
| SRR6216699 | leaf | nontransgenic rice plant | 15.86 | HC |
| SRR1213692 | leaf | wt | 5.55 | HC |
| SRR1213693 | leaf | wt | 10.34 | HC |
| SRR6502085 | leaf | 100 mM NaCl | 5.68 | HC |
| SRR6502087 | leaf | 100 mM NaCl | 5.67 | HC |
| SRR6502088 | leaf | control | 4.29 | HC |
| SRR6502089 | leaf | control | 5.19 | HC |
| SRR6502090 | leaf | control | 5.27 | HC |
| SRR6502099 | leaf | 100 mM NaCl | 6.33 | HC |
| SRR5856927 | leaf | control | 6.94 | HC |
| SRR5856928 | leaf | control | 6.30 | HC |
| SRR5856929 | leaf | control | 5.83 | HC |
| SRR5856930 | leaf | salt | 5.64 | HC |
| SRR5856931 | leaf | salt | 4.84 | HC |
| SRR5856932 | leaf | salt | 4.53 | HC |
| SRR5856933 | leaf | control | 5.13 | HC |
| SRR5856934 | leaf | control | 5.87 | HC |
| SRR5856935 | leaf | control | 5.74 | HC |
| SRR5856936 | leaf | salt | 4.10 | HC |
| SRR5856937 | leaf | salt | 3.14 | HC |
| SRR5856938 | leaf | salt | 3.81 | HC |
| SRR6168973 | leaf | none (control) | 8.34 | HC |
| SRR6168974 | leaf | none (control) | 16.29 | HC |
| SRR6168975 | leaf | none (control) | 9.00 | HC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 24.92 | HC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 11.38 | HC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 12.18 | HC |
| SRR6168979 | leaf | none (control) | 9.20 | HC |
| SRR6168980 | leaf | none (control) | 8.33 | HC |
| SRR6168981 | leaf | none (control) | 6.23 | HC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 5.01 | HC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 7.87 | HC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 14.61 | HC |
| SRR8582889 | panicle | AM | 1.90 | HC |
| SRR8582893 | panicle | PM | 5.35 | HC |
| SRR4947496 | root | control | 7.59 | HC |
| SRR5110434 | panicle | Dawn + 3.5h | 5.55 | HC |
| SRR5110435 | panicle | Dawn + 3.5h | 3.35 | HC |
| SRR5110436 | panicle | Dawn + 3.5h | 5.38 | HC |
| SRR5110437 | panicle | Dawn + 7h | 7.11 | HC |
| SRR5110438 | panicle | Dawn + 7h | 7.93 | HC |
| SRR5110440 | panicle | Dawn + 7h | 6.42 | HC |
| SRR5110441 | panicle | Dawn + 10.5h | 5.83 | HC |
| SRR5110442 | panicle | Dawn + 10.5h | 7.35 | HC |
| SRR5110443 | panicle | Dawn + 10.5h | 7.42 | HC |
| SRR5110444 | panicle | Dawn + 10.5h | 6.75 | HC |
| SRR5110446 | panicle | Dusk | 6.30 | HC |
| SRR5110447 | panicle | Dusk | 8.35 | HC |
| SRR5110448 | panicle | Dusk | 6.02 | HC |
| SRR5110451 | panicle | Dawn + 14h | 5.22 | HC |
| SRR5110456 | panicle | Dawn + 17.5h | 5.14 | HC |
| SRR5110457 | panicle | Dawn + 21h | 3.79 | HC |
| SRR1213696 | endosprem | wt(milk grains) | 3.11 | HC |
| SRR1633182 | panicle | WT | 7.39 | HC |
| SRR1633185 | panicle | WT | 7.12 | HC |
| SRR5278374 | pistil | "Balilla,S1" | 7.36 | HC |
| SRR5278375 | pistil | "Balilla,S1" | 6.76 | HC |
| SRR5278376 | pistil | "Balilla,S2" | 9.73 | HC |
| SRR5278377 | pistil | "Balilla,S2" | 8.59 | HC |
| SRR5278378 | pistil | "Balilla,S3" | 16.31 | HC |
| SRR5278379 | pistil | "Balilla,S3" | 21.70 | HC |
| SRR5126147 | root | "mock,1_day" | 19.92 | HC |
| SRR5126148 | root | "mock,1_day" | 24.28 | HC |
| SRR5126149 | root | "mock,1_day" | 14.95 | HC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 13.21 | HC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 13.16 | HC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 18.09 | HC |
| SRR5126153 | root | "mock,7_days" | 11.69 | HC |
| SRR5126155 | root | "mock,7_days" | 16.16 | HC |
| SRR5126157 | root | "mock,7_days" | 9.97 | HC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 11.70 | HC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 10.21 | HC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 11.27 | HC |
| SRR5126165 | root | "mock,14_days" | 15.77 | HC |
| SRR5126167 | root | "mock,14_days" | 7.62 | HC |
| SRR5126169 | root | "mock,14_days" | 18.20 | HC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 12.39 | HC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 14.20 | HC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 12.92 | HC |
| SRR3472897 | root | nontransgenic_rice_plant | 29.51 | HC |
| SRR3472900 | root | nontransgenic_rice_plant | 21.76 | HC |
| SRR1213694 | root | wt | 4.07 | HC |
| SRR1213695 | root | wt | 3.45 | HC |
| SRR4947480 | root | control | 10.53 | HC |
| SRR4947481 | root | control | 9.66 | HC |
| SRR4947484 | root | Al | 8.52 | HC |
| SRR4947485 | root | Al | 8.90 | HC |
| SRR4947488 | root | control | 10.06 | HC |
| SRR4947489 | root | control | 10.59 | HC |
| SRR4947491 | root | Al | 7.64 | HC |
| SRR4947492 | root | Al | 9.43 | HC |
| SRR4947493 | root | Al | 10.30 | HC |
| SRR4947497 | root | control | 7.53 | HC |
| SRR4947499 | root | Al | 5.24 | HC |
| SRR4947500 | root | Al | 10.20 | HC |
| SRR4947501 | root | Al | 9.84 | HC |
| SRR4947502 | root | control | 5.72 | HC |
| SRR4947504 | root | control | 7.37 | HC |
| SRR4947505 | root | control | 10.78 | HC |
| SRR4947508 | root | Al | 5.75 | HC |
| SRR6502091 | root | 100 mM NaCl | 12.93 | HC |
| SRR6502092 | root | 100 mM NaCl | 15.22 | HC |
| SRR6502093 | root | 100 mM NaCl | 14.38 | HC |
| SRR6502094 | root | control | 15.79 | HC |
| SRR6502095 | root | control | 24.71 | HC |
| SRR6502096 | root | control | 15.68 | HC |
| SRR6502103 | root | 100 mM NaCl | 7.48 | HC |
| SRR6502104 | root | 100 mM NaCl | 10.54 | HC |
| SRR6502105 | root | 100 mM NaCl | 23.89 | HC |
| SRR6502106 | root | control | 14.13 | HC |
| SRR6502107 | root | control | 10.75 | HC |
| SRR6502108 | root | control | 16.40 | HC |
| SRR1740434 | root_differentiation_zone | wt | 8.34 | HC |
| SRR1740435 | root_differentiation_zone | wt | 12.23 | HC |
| SRR1740436 | root_differentiation_zone | wt | 14.99 | HC |
| SRR1740431 | root_elongation_zone | wt | 11.16 | HC |
| SRR1740432 | root_elongation_zone | wt | 11.78 | HC |
| SRR1740433 | root_elongation_zone | wt | 15.47 | HC |
| SRR1740428 | root_meristematic_zone | wt | 19.79 | HC |
| SRR1740429 | root_meristematic_zone | wt | 27.58 | HC |
| SRR1740430 | root_meristematic_zone | wt | 31.47 | HC |
| SRR6441554 | seedling | wild_type | 5.48 | HC |
| SRR6441555 | seedling | wild_type | 6.84 | HC |
| SRR2154086 | seedling | wt | 7.84 | HC |
| SRR2154085 | seedling | wt | 6.54 | HC |
| SRR2154087 | seedling | wt | 4.24 | HC |
| SRR3098741 | seedling | wt | 3.64 | HC |
| SRR3098742 | seedling | wt | 4.46 | HC |
| SRR3098743 | seedling | wt | 3.53 | HC |
| SRR2857719 | seedling | drought_stress_0h | 4.56 | HC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 6.90 | HC |
| SRR1944583 | seedling | no_treatment | 5.80 | HC |
| SRR358793 | seedling | wt | 11.79 | HC |
| SRR358794 | seedling | wt | 12.05 | HC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 7.20 | HC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 5.85 | HC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 13.61 | HC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 14.94 | HC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 11.97 | HC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 8.81 | HC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 7.81 | HC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 10.69 | HC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 15.89 | HC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 18.23 | HC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 22.11 | HC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 12.85 | HC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 14.69 | HC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 19.90 | HC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 11.33 | HC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 14.28 | HC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 22.03 | HC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 8.42 | HC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 14.07 | HC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 19.20 | HC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 4.23 | HC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 4.73 | HC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 5.37 | HC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 8.07 | HC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 7.58 | HC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 8.37 | HC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 9.95 | HC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 2.85 | HC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 4.40 | HC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 3.10 | HC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 9.81 | HC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 6.05 | HC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 5.33 | HC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 18.33 | HC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 21.03 | HC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 21.63 | HC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 18.26 | HC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 18.68 | HC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 14.99 | HC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 11.95 | HC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 25.03 | HC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 19.06 | HC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 24.83 | HC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 34.29 | HC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 22.80 | HC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 12.50 | HC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 16.07 | HC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 17.30 | HC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 15.14 | HC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 17.77 | HC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 16.35 | HC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 13.74 | HC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 18.04 | HC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 19.06 | HC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 12.72 | HC |
| SRR1617549 | shoot_apical_meristem | no collect | 9.24 | HC |
| SRR1617550 | shoot_apical_meristem | no collect | 14.17 | HC |
| SRR1617553 | shoot_apical_meristem | no collect | 12.01 | HC |
| SRR1617554 | shoot_apical_meristem | no collect | 12.13 | HC |
| SRR1617556 | shoot_apical_meristem | no collect | 14.12 | HC |
| SRR1617557 | shoot_apical_meristem | no collect | 17.09 | HC |
| SRR1617558 | shoot_apical_meristem | no collect | 13.71 | HC |
| SRR1617559 | shoot_apical_meristem | no collect | 10.71 | HC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 24.06 | HC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 28.32 | HC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 32.81 | HC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 20.87 | HC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 26.52 | HC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 21.31 | HC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 16.56 | HC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 13.11 | HC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 17.05 | HC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 10.31 | HC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 8.11 | HC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 4.24 | HC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 5.77 | HC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 10.16 | HC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 9.09 | HC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 8.86 | HC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 8.85 | HC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 8.40 | HC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 9.04 | HC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 7.35 | HC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 8.17 | HC |