| SRR4457251 | 2nd_leaf | DAH4 | 3.75 | HC |
| SRR6320473 | carpel | wt | 12.57 | HC |
| SRR6320498 | carpel | wt | 13.66 | HC |
| SRR5560727 | caryopsis | wild_type | 10.33 | HC |
| SRR5560728 | caryopsis | wild_type | 12.65 | HC |
| SRR5560729 | caryopsis | wild_type | 11.64 | HC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 6.04 | HC |
| SRR7265403 | coleoptile | 2dN | 4.44 | HC |
| SRR7265409 | coleoptile | 3dN | 8.29 | HC |
| SRR7265410 | coleoptile | 3dN | 4.30 | HC |
| SRR7265411 | coleoptile | 3dN | 4.52 | HC |
| SRR7265413 | coleoptile | 4dA | 5.68 | HC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 5.11 | HC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 5.82 | HC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 7.83 | HC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 5.64 | HC |
| SRR7265373 | embryo | dry seed 0 h | 11.86 | HC |
| SRR7265374 | embryo | dry seed 0 h | 11.90 | HC |
| SRR7265375 | embryo | dry seed 0 h | 3.39 | HC |
| SRR7265376 | embryo | 1hA | 10.46 | HC |
| SRR7265377 | embryo | 1hA | 9.09 | HC |
| SRR7265378 | embryo | 1hA | 10.60 | HC |
| SRR7265379 | embryo | 1hN | 10.10 | HC |
| SRR7265380 | embryo | 1hN | 10.38 | HC |
| SRR7265381 | embryo | 1hN | 11.03 | HC |
| SRR7265382 | embryo | 3hA | 10.09 | HC |
| SRR7265383 | embryo | 3hA | 9.38 | HC |
| SRR7265384 | embryo | 3hA | 8.89 | HC |
| SRR7265385 | embryo | 3hN | 9.14 | HC |
| SRR7265386 | embryo | 3hN | 9.16 | HC |
| SRR7265387 | embryo | 3hN | 8.92 | HC |
| SRR7265389 | embryo | 12hA | 5.18 | HC |
| SRR2338867 | endosprem | control | 59.50 | HC |
| SRR2338868 | endosprem | high_temperature | 6.23 | HC |
| SRR4457233 | flag_leaf | DAH4 | 3.42 | HC |
| SRR1213690 | flower | wt(flower buds) | 7.28 | HC |
| SRR8060837 | leaf | wild_type | 3.28 | HC |
| SRR8240824 | leaf | wild_type | 4.15 | HC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 6.22 | HC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 7.46 | HC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 7.83 | HC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 5.47 | HC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 13.51 | HC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 7.13 | HC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 6.69 | HC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 3.86 | HC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 8.35 | HC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 7.78 | HC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 6.10 | HC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 6.46 | HC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 5.06 | HC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 5.63 | HC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 6.84 | HC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 6.07 | HC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 5.47 | HC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 6.94 | HC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 9.52 | HC |
| SRR1761789 | leaf | "wild_type,drought,2" | 6.76 | HC |
| SRR1761781 | leaf | "wild_type,drought,1" | 6.76 | HC |
| SRR1761529 | leaf | drought | 6.76 | HC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 12.17 | HC |
| SRR6417967 | leaf | H2O_control | 6.89 | HC |
| SRR6417968 | leaf | H2O_control | 8.75 | HC |
| SRR6417969 | leaf | H2O_control | 4.13 | HC |
| SRR3209771 | leaf | Drought;Long_Day | 13.08 | HC |
| SRR3209772 | leaf | Drought;Long_Day | 10.13 | HC |
| SRR3209774 | leaf | Watered;Short_Day | 6.03 | HC |
| SRR3209775 | leaf | Drought;Short_Day | 9.56 | HC |
| SRR3209776 | leaf | Drought;Short_Day | 15.22 | HC |
| SRR3209777 | leaf | Watered;Long_Day | 3.92 | HC |
| SRR3209778 | leaf | Drought;Long_Day | 11.88 | HC |
| SRR3209780 | leaf | Drought;Short_Day | 5.19 | HC |
| SRR8611900 | leaf | Non-inoculated | 10.44 | HC |
| SRR8611901 | leaf | Non-inoculated | 9.42 | HC |
| SRR8611902 | leaf | Non-inoculated | 4.61 | HC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 6.44 | HC |
| SRR6216698 | leaf | nontransgenic rice plant | 7.12 | HC |
| SRR6216699 | leaf | nontransgenic rice plant | 4.03 | HC |
| SRR1213692 | leaf | wt | 9.45 | HC |
| SRR1213693 | leaf | wt | 4.03 | HC |
| SRR6502085 | leaf | 100 mM NaCl | 5.31 | HC |
| SRR6502086 | leaf | 100 mM NaCl | 6.33 | HC |
| SRR6502088 | leaf | control | 4.44 | HC |
| SRR6502098 | leaf | 100 mM NaCl | 8.74 | HC |
| SRR6502099 | leaf | 100 mM NaCl | 5.94 | HC |
| SRR6053396 | leaf | gibberellic acid (GA) | 16.37 | HC |
| SRR6053397 | leaf | gibberellic acid (GA) | 25.28 | HC |
| SRR6053398 | leaf | Paclobutrazol (PB) | 17.10 | HC |
| SRR6053400 | leaf | Paclobutrazol (PB) | 14.78 | HC |
| SRR6168973 | leaf | none (control) | 12.00 | HC |
| SRR6168974 | leaf | none (control) | 12.30 | HC |
| SRR6168975 | leaf | none (control) | 12.26 | HC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 13.89 | HC |
| SRR6168979 | leaf | none (control) | 4.66 | HC |
| SRR6168980 | leaf | none (control) | 1.88 | HC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 3.55 | HC |
| SRR8582888 | panicle | AM | 7.27 | HC |
| SRR8582889 | panicle | AM | 1.81 | HC |
| SRR8582890 | panicle | AM | 5.35 | HC |
| SRR8582892 | panicle | PM | 11.63 | HC |
| SRR5110432 | panicle | Dawn | 5.74 | HC |
| SRR5110434 | panicle | Dawn + 3.5h | 8.38 | HC |
| SRR5110435 | panicle | Dawn + 3.5h | 7.01 | HC |
| SRR5110437 | panicle | Dawn + 7h | 12.43 | HC |
| SRR5110440 | panicle | Dawn + 7h | 15.40 | HC |
| SRR5110441 | panicle | Dawn + 10.5h | 13.47 | HC |
| SRR5110442 | panicle | Dawn + 10.5h | 7.01 | HC |
| SRR5110443 | panicle | Dawn + 10.5h | 10.44 | HC |
| SRR5110446 | panicle | Dusk | 8.02 | HC |
| SRR5110447 | panicle | Dusk | 7.43 | HC |
| SRR5110448 | panicle | Dusk | 19.36 | HC |
| SRR5110450 | panicle | Dawn + 14h | 8.38 | HC |
| SRR5110451 | panicle | Dawn + 14h | 7.63 | HC |
| SRR5110452 | panicle | Dawn + 14h | 6.70 | HC |
| SRR5110453 | panicle | Dawn + 17.5h | 6.88 | HC |
| SRR5110454 | panicle | Dawn + 17.5h | 4.76 | HC |
| SRR5110455 | panicle | Dawn + 17.5h | 6.87 | HC |
| SRR5110457 | panicle | Dawn + 21h | 11.14 | HC |
| SRR5110460 | panicle | Dawn + 21h | 5.21 | HC |
| SRR1213696 | endosprem | wt(milk grains) | 22.65 | HC |
| SRR1213697 | endosprem | wt(mature seeds) | 17.20 | HC |
| SRR5278376 | pistil | "Balilla,S2" | 5.07 | HC |
| SRR5278378 | pistil | "Balilla,S3" | 8.02 | HC |
| SRR5278379 | pistil | "Balilla,S3" | 9.72 | HC |
| SRR5126147 | root | "mock,1_day" | 4.50 | HC |
| SRR5126148 | root | "mock,1_day" | 5.38 | HC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 5.64 | HC |
| SRR5126157 | root | "mock,7_days" | 10.38 | HC |
| SRR5126167 | root | "mock,14_days" | 10.35 | HC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 8.17 | HC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 11.95 | HC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 7.38 | HC |
| SRR3472897 | root | nontransgenic_rice_plant | 8.81 | HC |
| SRR3472900 | root | nontransgenic_rice_plant | 8.73 | HC |
| SRR1213695 | root | wt | 4.79 | HC |
| SRR4947479 | root | control | 12.58 | HC |
| SRR4947484 | root | Al | 8.01 | HC |
| SRR4947490 | root | Al | 12.92 | HC |
| SRR4947501 | root | Al | 6.79 | HC |
| SRR6502105 | root | 100 mM NaCl | 6.86 | HC |
| SRR1740434 | root_differentiation_zone | wt | 4.09 | HC |
| SRR6441554 | seedling | wild_type | 10.92 | HC |
| SRR2154082 | seedling | wt | 15.84 | HC |
| SRR2154083 | seedling | wt | 4.82 | HC |
| SRR2154084 | seedling | wt | 18.34 | HC |
| SRR2154085 | seedling | wt | 6.52 | HC |
| SRR3098741 | seedling | wt | 2.87 | HC |
| SRR2857721 | seedling | drought_stress_6h | 3.52 | HC |
| SRR1944583 | seedling | no_treatment | 5.97 | HC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 7.56 | HC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 5.75 | HC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 5.71 | HC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 5.10 | HC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 6.59 | HC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 8.70 | HC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 4.81 | HC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 8.68 | HC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 4.62 | HC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 13.17 | HC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 9.27 | HC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 8.59 | HC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 9.16 | HC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 3.05 | HC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 7.72 | HC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 16.99 | HC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 9.48 | HC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 4.82 | HC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 8.82 | HC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 14.45 | HC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 7.02 | HC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 10.82 | HC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 11.71 | HC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 3.77 | HC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 2.66 | HC |