| SRR358795 | callus | wt | 11.24 | HC |
| SRR358797 | callus | wt | 9.58 | HC |
| SRR358798 | callus | wt | 11.88 | HC |
| SRR6320473 | carpel | wt | 27.69 | HC |
| SRR6320498 | carpel | wt | 28.45 | HC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 69.01 | HC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 21.78 | HC |
| SRR7265406 | coleoptile | 3dA | 5.53 | HC |
| SRR7265407 | coleoptile | 3dA | 4.83 | HC |
| SRR7265408 | coleoptile | 3dA | 3.72 | HC |
| SRR7265373 | embryo | dry seed 0 h | 13.92 | HC |
| SRR7265374 | embryo | dry seed 0 h | 16.72 | HC |
| SRR7265375 | embryo | dry seed 0 h | 4.12 | HC |
| SRR7265376 | embryo | 1hA | 67.36 | HC |
| SRR7265377 | embryo | 1hA | 81.92 | HC |
| SRR7265378 | embryo | 1hA | 71.89 | HC |
| SRR7265379 | embryo | 1hN | 29.46 | HC |
| SRR7265380 | embryo | 1hN | 47.09 | HC |
| SRR7265381 | embryo | 1hN | 39.08 | HC |
| SRR7265382 | embryo | 3hA | 145.32 | HC |
| SRR7265383 | embryo | 3hA | 166.69 | HC |
| SRR7265384 | embryo | 3hA | 149.24 | HC |
| SRR7265385 | embryo | 3hN | 150.14 | HC |
| SRR7265386 | embryo | 3hN | 118.87 | HC |
| SRR7265387 | embryo | 3hN | 129.89 | HC |
| SRR7265388 | embryo | 12hA | 5.77 | HC |
| SRR7265389 | embryo | 12hA | 6.22 | HC |
| SRR7265390 | embryo | 12hA | 6.34 | HC |
| SRR7265391 | embryo | 12hN | 14.88 | HC |
| SRR7265392 | embryo | 12hN | 13.07 | HC |
| SRR7265393 | embryo | 12hN | 9.22 | HC |
| SRR2338867 | endosprem | control | 2.53 | HC |
| SRR2338868 | endosprem | high_temperature | 2.89 | HC |
| SRR2338869 | endosprem | high_temperature | 7.29 | HC |
| SRR976168 | flag_leaf | wild_type | 126.89 | HC |
| SRR1213690 | flower | wt(flower buds) | 8.67 | HC |
| SRR1213691 | flower | wt | 30.76 | HC |
| SRR8060835 | leaf | wild_type | 11.80 | HC |
| SRR8060836 | leaf | wild_type | 21.19 | HC |
| SRR8060837 | leaf | wild_type | 11.85 | HC |
| SRR8240824 | leaf | wild_type | 3.21 | HC |
| SRR8240826 | leaf | wild_type | 2.60 | HC |
| SRR8240818 | leaf | wild_type | 4.24 | HC |
| SRR8240819 | leaf | wild_type | 5.35 | HC |
| SRR8240820 | leaf | wild_type | 9.59 | HC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 6.85 | HC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 20.23 | HC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 14.25 | HC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 7.86 | HC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 9.38 | HC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 11.47 | HC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 9.32 | HC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 9.52 | HC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 9.70 | HC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 7.69 | HC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 12.45 | HC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 10.26 | HC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 10.46 | HC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 9.49 | HC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 9.13 | HC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 7.43 | HC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 11.93 | HC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 9.28 | HC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 7.65 | HC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 9.97 | HC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 8.22 | HC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 8.31 | HC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 9.75 | HC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 7.83 | HC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 11.39 | HC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 9.54 | HC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 9.71 | HC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 15.94 | HC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 9.88 | HC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 7.45 | HC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 23.95 | HC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 8.55 | HC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 12.19 | HC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 13.25 | HC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 7.01 | HC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 11.19 | HC |
| SRR1761788 | leaf | "wild_type,drought,2" | 148.33 | HC |
| SRR1761789 | leaf | "wild_type,drought,2" | 176.78 | HC |
| SRR1761790 | leaf | "wild_type,control,2" | 11.73 | HC |
| SRR1761791 | leaf | "wild_type,control,2" | 13.74 | HC |
| SRR1761780 | leaf | "wild_type,drought,1" | 148.32 | HC |
| SRR1761781 | leaf | "wild_type,drought,1" | 176.78 | HC |
| SRR1761782 | leaf | "wild_type,control,1" | 11.73 | HC |
| SRR1761783 | leaf | "wild_type,control,1" | 13.74 | HC |
| SRR1761528 | leaf | drought | 148.32 | HC |
| SRR1761529 | leaf | drought | 176.79 | HC |
| SRR1761530 | leaf | control | 11.73 | HC |
| SRR1761531 | leaf | control | 13.74 | HC |
| SRR504365 | leaf | wt | 6.33 | HC |
| SRR3209770 | leaf | Watered;Long_Day | 8.67 | HC |
| SRR3209771 | leaf | Drought;Long_Day | 6.47 | HC |
| SRR3209775 | leaf | Drought;Short_Day | 9.51 | HC |
| SRR3209776 | leaf | Drought;Short_Day | 9.11 | HC |
| SRR3209777 | leaf | Watered;Long_Day | 10.60 | HC |
| SRR3209778 | leaf | Drought;Long_Day | 8.49 | HC |
| SRR3209779 | leaf | Watered;Short_Day | 4.27 | HC |
| SRR3209780 | leaf | Drought;Short_Day | 9.17 | HC |
| SRR8611900 | leaf | Non-inoculated | 10.02 | HC |
| SRR8611901 | leaf | Non-inoculated | 11.93 | HC |
| SRR8611902 | leaf | Non-inoculated | 11.39 | HC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 4.03 | HC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 4.83 | HC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 4.80 | HC |
| SRR6216698 | leaf | nontransgenic rice plant | 14.28 | HC |
| SRR6216699 | leaf | nontransgenic rice plant | 14.86 | HC |
| SRR1213692 | leaf | wt | 42.63 | HC |
| SRR1213693 | leaf | wt | 19.73 | HC |
| SRR6502085 | leaf | 100 mM NaCl | 12.17 | HC |
| SRR6502086 | leaf | 100 mM NaCl | 7.40 | HC |
| SRR6502088 | leaf | control | 8.60 | HC |
| SRR6502089 | leaf | control | 8.08 | HC |
| SRR6502090 | leaf | control | 5.16 | HC |
| SRR6502097 | leaf | 100 mM NaCl | 8.21 | HC |
| SRR6502098 | leaf | 100 mM NaCl | 5.42 | HC |
| SRR6502099 | leaf | 100 mM NaCl | 4.70 | HC |
| SRR6502100 | leaf | control | 7.81 | HC |
| SRR6502101 | leaf | control | 5.98 | HC |
| SRR6502102 | leaf | control | 6.34 | HC |
| SRR5856927 | leaf | control | 6.85 | HC |
| SRR5856928 | leaf | control | 8.25 | HC |
| SRR5856929 | leaf | control | 5.23 | HC |
| SRR5856931 | leaf | salt | 2.16 | HC |
| SRR5856933 | leaf | control | 10.75 | HC |
| SRR5856934 | leaf | control | 12.34 | HC |
| SRR5856935 | leaf | control | 6.58 | HC |
| SRR5856936 | leaf | salt | 1.95 | HC |
| SRR5856937 | leaf | salt | 1.92 | HC |
| SRR5856938 | leaf | salt | 2.06 | HC |
| SRR6053392 | leaf | ethanol solvent (untreated control) | 20.72 | HC |
| SRR6053393 | leaf | ethanol solvent (untreated control) | 18.55 | HC |
| SRR6053394 | leaf | ethanol solvent (untreated control) | 20.80 | HC |
| SRR6053395 | leaf | gibberellic acid (GA) | 48.51 | HC |
| SRR6053396 | leaf | gibberellic acid (GA) | 40.84 | HC |
| SRR6053397 | leaf | gibberellic acid (GA) | 44.12 | HC |
| SRR6053398 | leaf | Paclobutrazol (PB) | 52.98 | HC |
| SRR6053399 | leaf | Paclobutrazol (PB) | 40.47 | HC |
| SRR6053400 | leaf | Paclobutrazol (PB) | 48.72 | HC |
| SRR6168973 | leaf | none (control) | 6.83 | HC |
| SRR6168974 | leaf | none (control) | 14.11 | HC |
| SRR6168975 | leaf | none (control) | 14.27 | HC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 8.22 | HC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 18.37 | HC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 7.57 | HC |
| SRR6168979 | leaf | none (control) | 19.57 | HC |
| SRR6168980 | leaf | none (control) | 6.28 | HC |
| SRR6168981 | leaf | none (control) | 5.23 | HC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 2.68 | HC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 8.97 | HC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 12.97 | HC |
| SRR8582891 | panicle | PM | 8.70 | HC |
| SRR8582892 | panicle | PM | 9.59 | HC |
| SRR8582893 | panicle | PM | 9.43 | HC |
| SRR5110437 | panicle | Dawn + 7h | 5.26 | HC |
| SRR5110438 | panicle | Dawn + 7h | 5.64 | HC |
| SRR5110440 | panicle | Dawn + 7h | 9.20 | HC |
| SRR5110441 | panicle | Dawn + 10.5h | 5.37 | HC |
| SRR5110442 | panicle | Dawn + 10.5h | 5.28 | HC |
| SRR5110443 | panicle | Dawn + 10.5h | 6.24 | HC |
| SRR5110446 | panicle | Dusk | 4.91 | HC |
| SRR5110447 | panicle | Dusk | 5.37 | HC |
| SRR5110448 | panicle | Dusk | 6.25 | HC |
| SRR5110457 | panicle | Dawn + 21h | 4.49 | HC |
| SRR1213696 | endosprem | wt(milk grains) | 4.82 | HC |
| SRR1213697 | endosprem | wt(mature seeds) | 5.26 | HC |
| SRR1633182 | panicle | WT | 13.83 | HC |
| SRR1633185 | panicle | WT | 11.27 | HC |
| SRR5278374 | pistil | "Balilla,S1" | 15.04 | HC |
| SRR5278375 | pistil | "Balilla,S1" | 16.41 | HC |
| SRR5278376 | pistil | "Balilla,S2" | 29.85 | HC |
| SRR5278377 | pistil | "Balilla,S2" | 30.49 | HC |
| SRR5278378 | pistil | "Balilla,S3" | 64.52 | HC |
| SRR5278379 | pistil | "Balilla,S3" | 46.97 | HC |
| SRR5126155 | root | "mock,7_days" | 5.49 | HC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 22.12 | HC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 40.55 | HC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 6.52 | HC |
| SRR5126167 | root | "mock,14_days" | 46.63 | HC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 17.19 | HC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 35.92 | HC |
| SRR3472897 | root | nontransgenic_rice_plant | 3.39 | HC |
| SRR1213694 | root | wt | 365.67 | HC |
| SRR1213695 | root | wt | 20.98 | HC |
| SRR4947482 | root | Al | 10.34 | HC |
| SRR4947485 | root | Al | 8.61 | HC |
| SRR4947488 | root | control | 5.11 | HC |
| SRR6502106 | root | control | 5.62 | HC |
| SRR1740434 | root_differentiation_zone | wt | 31.97 | HC |
| SRR1740435 | root_differentiation_zone | wt | 4.05 | HC |
| SRR1740431 | root_elongation_zone | wt | 6.02 | HC |
| SRR6441554 | seedling | wild_type | 52.61 | HC |
| SRR6441555 | seedling | wild_type | 111.36 | HC |
| SRR2154086 | seedling | wt | 10.31 | HC |
| SRR2154082 | seedling | wt | 26.38 | HC |
| SRR2154083 | seedling | wt | 30.41 | HC |
| SRR2154084 | seedling | wt | 13.07 | HC |
| SRR2154085 | seedling | wt | 11.15 | HC |
| SRR2154087 | seedling | wt | 10.08 | HC |
| SRR2857720 | seedling | drought_stress_1h | 6.74 | HC |
| SRR2857721 | seedling | drought_stress_6h | 19.03 | HC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 71.75 | HC |
| SRR1944583 | seedling | no_treatment | 9.83 | HC |
| SRR358791 | seedling | wt | 25.51 | HC |
| SRR358792 | seedling | wt | 18.47 | HC |
| SRR358793 | seedling | wt | 18.58 | HC |
| SRR358794 | seedling | wt | 20.00 | HC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 6.50 | HC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 8.19 | HC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 8.77 | HC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 10.05 | HC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 10.68 | HC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 7.57 | HC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 17.96 | HC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 27.85 | HC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 24.64 | HC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 5.81 | HC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 13.73 | HC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 10.21 | HC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 8.94 | HC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 11.80 | HC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 12.42 | HC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 5.54 | HC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 13.12 | HC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 14.08 | HC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 15.06 | HC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 14.40 | HC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 57.07 | HC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 50.75 | HC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 34.02 | HC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 35.38 | HC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 13.26 | HC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 13.44 | HC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 15.63 | HC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 16.61 | HC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 102.83 | HC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 83.73 | HC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 529.78 | HC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 541.92 | HC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 226.29 | HC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 283.91 | HC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 10.06 | HC |
| SRR1617549 | shoot_apical_meristem | no collect | 16.62 | HC |
| SRR1617550 | shoot_apical_meristem | no collect | 13.46 | HC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 6.22 | HC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 4.68 | HC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 5.18 | HC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 28.53 | HC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 23.26 | HC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 27.81 | HC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 15.57 | HC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 16.01 | HC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 14.58 | HC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 5.29 | HC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 4.06 | HC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 4.20 | HC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 5.62 | HC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 4.69 | HC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 5.22 | HC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 3.79 | HC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 4.47 | HC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 4.41 | HC |