| SRR4457258 | 2nd_leaf | DAH28 | 4.41 | HC |
| SRR6320498 | carpel | wt | 41.19 | HC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 5.14 | HC |
| SRR7265402 | coleoptile | 2dA | 4.66 | HC |
| SRR7265418 | coleoptile | 3dN1dA | 4.50 | HC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 25.21 | HC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 39.50 | HC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 34.20 | HC |
| SRR7265390 | embryo | 12hA | 5.44 | HC |
| SRR4457237 | flag_leaf | DAH20 | 9.29 | HC |
| SRR4457240 | flag_leaf | DAH28 | 5.31 | HC |
| SRR4457241 | flag_leaf | DAH28 | 6.27 | HC |
| SRR8060836 | leaf | wild_type | 4.73 | HC |
| SRR8060837 | leaf | wild_type | 8.01 | HC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 7.04 | HC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 5.52 | HC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 41.82 | HC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 6.12 | HC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 4.12 | HC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 36.17 | HC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 40.19 | HC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 46.40 | HC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 3.91 | HC |
| SRR1761788 | leaf | "wild_type,drought,2" | 36.61 | HC |
| SRR1761780 | leaf | "wild_type,drought,1" | 36.61 | HC |
| SRR1761528 | leaf | drought | 36.61 | HC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 4.23 | HC |
| SRR3209773 | leaf | Watered;Short_Day | 22.21 | HC |
| SRR3209775 | leaf | Drought;Short_Day | 31.95 | HC |
| SRR3209779 | leaf | Watered;Short_Day | 3.36 | HC |
| SRR3209780 | leaf | Drought;Short_Day | 5.21 | HC |
| SRR6502085 | leaf | 100 mM NaCl | 6.28 | HC |
| SRR6502090 | leaf | control | 4.66 | HC |
| SRR6502097 | leaf | 100 mM NaCl | 32.02 | HC |
| SRR6502102 | leaf | control | 4.86 | HC |
| SRR5856930 | leaf | salt | 2.60 | HC |
| SRR5856931 | leaf | salt | 2.20 | HC |
| SRR5856933 | leaf | control | 3.94 | HC |
| SRR5856934 | leaf | control | 3.89 | HC |
| SRR5856936 | leaf | salt | 2.27 | HC |
| SRR5856938 | leaf | salt | 3.26 | HC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 5.01 | HC |
| SRR6168980 | leaf | none (control) | 1.81 | HC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 2.90 | HC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 3.38 | HC |
| SRR5110430 | panicle | Dawn | 36.90 | HC |
| SRR5110431 | panicle | Dawn | 37.21 | HC |
| SRR5110433 | panicle | Dawn + 3.5h | 6.45 | HC |
| SRR5110437 | panicle | Dawn + 7h | 14.81 | HC |
| SRR5110438 | panicle | Dawn + 7h | 27.19 | HC |
| SRR5110443 | panicle | Dawn + 10.5h | 21.03 | HC |
| SRR5110448 | panicle | Dusk | 41.81 | HC |
| SRR5110449 | panicle | Dawn + 14h | 40.23 | HC |
| SRR5110450 | panicle | Dawn + 14h | 20.45 | HC |
| SRR5110456 | panicle | Dawn + 17.5h | 15.64 | HC |
| SRR1633182 | panicle | WT | 29.63 | HC |
| SRR5278374 | pistil | "Balilla,S1" | 4.85 | HC |
| SRR5278375 | pistil | "Balilla,S1" | 7.05 | HC |
| SRR5126148 | root | "mock,1_day" | 6.12 | HC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 5.36 | HC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 5.39 | HC |
| SRR5126167 | root | "mock,14_days" | 4.97 | HC |
| SRR3472897 | root | nontransgenic_rice_plant | 3.51 | HC |
| SRR3472900 | root | nontransgenic_rice_plant | 2.80 | HC |
| SRR4947478 | root | control | 31.85 | HC |
| SRR4947479 | root | control | 32.42 | HC |
| SRR4947481 | root | control | 40.85 | HC |
| SRR4947482 | root | Al | 42.19 | HC |
| SRR4947499 | root | Al | 32.97 | HC |
| SRR4947502 | root | control | 41.92 | HC |
| SRR4947506 | root | Al | 29.93 | HC |
| SRR4947508 | root | Al | 27.57 | HC |
| SRR4947509 | root | Al | 33.91 | HC |
| SRR6502093 | root | 100 mM NaCl | 5.81 | HC |
| SRR6502094 | root | control | 24.50 | HC |
| SRR6502096 | root | control | 5.25 | HC |
| SRR6502105 | root | 100 mM NaCl | 30.26 | HC |
| SRR6502107 | root | control | 25.19 | HC |
| SRR1740435 | root_differentiation_zone | wt | 2.79 | HC |
| SRR1740428 | root_meristematic_zone | wt | 23.30 | HC |
| SRR6441554 | seedling | wild_type | 3.67 | HC |
| SRR2154082 | seedling | wt | 35.05 | HC |
| SRR2857720 | seedling | drought_stress_1h | 11.59 | HC |
| SRR2857721 | seedling | drought_stress_6h | 7.93 | HC |
| SRR1944583 | seedling | no_treatment | 25.14 | HC |
| SRR358793 | seedling | wt | 30.23 | HC |
| SRR358794 | seedling | wt | 31.80 | HC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 10.69 | HC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 12.75 | HC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 16.38 | HC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 14.69 | HC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 36.48 | HC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 9.48 | HC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 4.61 | HC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 3.45 | HC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 3.99 | HC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 38.02 | HC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 29.67 | HC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 31.32 | HC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 31.82 | HC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 27.14 | HC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 31.57 | HC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 38.21 | HC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 27.45 | HC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 29.68 | HC |
| SRR1617553 | shoot_apical_meristem | no collect | 36.43 | HC |
| SRR1617554 | shoot_apical_meristem | no collect | 36.15 | HC |
| SRR1617556 | shoot_apical_meristem | no collect | 29.03 | HC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 14.54 | HC |