| SRR358795 | callus | wt | 14.42 | HC |
| SRR358796 | callus | wt | 15.39 | HC |
| SRR358797 | callus | wt | 14.73 | HC |
| SRR358798 | callus | wt | 19.56 | HC |
| SRR5560727 | caryopsis | wild_type | 26.41 | HC |
| SRR5560728 | caryopsis | wild_type | 16.68 | HC |
| SRR5560729 | caryopsis | wild_type | 8.41 | HC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 5.33 | HC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 5.60 | HC |
| SRR2338868 | endosprem | high_temperature | 3.52 | HC |
| SRR1213691 | flower | wt | 4.42 | HC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 3.63 | HC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 6.65 | HC |
| SRR6216698 | leaf | nontransgenic rice plant | 5.22 | HC |
| SRR6216699 | leaf | nontransgenic rice plant | 4.12 | HC |
| SRR5856927 | leaf | control | 35.56 | HC |
| SRR5856928 | leaf | control | 36.33 | HC |
| SRR5856929 | leaf | control | 22.51 | HC |
| SRR5856930 | leaf | salt | 69.84 | HC |
| SRR5856931 | leaf | salt | 79.01 | HC |
| SRR5856932 | leaf | salt | 75.94 | HC |
| SRR5856933 | leaf | control | 22.07 | HC |
| SRR5856934 | leaf | control | 24.69 | HC |
| SRR5856935 | leaf | control | 46.87 | HC |
| SRR5856936 | leaf | salt | 67.20 | HC |
| SRR5856937 | leaf | salt | 79.46 | HC |
| SRR5856938 | leaf | salt | 67.78 | HC |
| SRR6168973 | leaf | none (control) | 19.50 | HC |
| SRR6168974 | leaf | none (control) | 26.15 | HC |
| SRR6168975 | leaf | none (control) | 14.92 | HC |
| SRR6168980 | leaf | none (control) | 6.06 | HC |
| SRR6168981 | leaf | none (control) | 16.75 | HC |
| SRR4947496 | root | control | 10.56 | HC |
| SRR1213696 | endosprem | wt(milk grains) | 2.27 | HC |
| SRR1633182 | panicle | WT | 28.98 | HC |
| SRR1633185 | panicle | WT | 39.28 | HC |
| SRR5278374 | pistil | "Balilla,S1" | 10.19 | HC |
| SRR5278375 | pistil | "Balilla,S1" | 11.27 | HC |
| SRR5278376 | pistil | "Balilla,S2" | 17.40 | HC |
| SRR5278377 | pistil | "Balilla,S2" | 18.32 | HC |
| SRR5278378 | pistil | "Balilla,S3" | 10.73 | HC |
| SRR5278379 | pistil | "Balilla,S3" | 9.69 | HC |
| SRR5126147 | root | "mock,1_day" | 8.93 | HC |
| SRR5126148 | root | "mock,1_day" | 8.51 | HC |
| SRR5126149 | root | "mock,1_day" | 12.21 | HC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 11.25 | HC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 12.81 | HC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 10.66 | HC |
| SRR5126153 | root | "mock,7_days" | 7.42 | HC |
| SRR5126155 | root | "mock,7_days" | 16.00 | HC |
| SRR5126157 | root | "mock,7_days" | 49.36 | HC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 21.49 | HC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 27.93 | HC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 12.30 | HC |
| SRR5126165 | root | "mock,14_days" | 8.11 | HC |
| SRR5126167 | root | "mock,14_days" | 8.98 | HC |
| SRR5126169 | root | "mock,14_days" | 22.00 | HC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 15.44 | HC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 12.56 | HC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 33.09 | HC |
| SRR3472897 | root | nontransgenic_rice_plant | 5.65 | HC |
| SRR3472900 | root | nontransgenic_rice_plant | 6.77 | HC |
| SRR4947480 | root | control | 12.49 | HC |
| SRR4947481 | root | control | 6.52 | HC |
| SRR4947484 | root | Al | 7.18 | HC |
| SRR4947488 | root | control | 13.39 | HC |
| SRR6502091 | root | 100 mM NaCl | 11.26 | HC |
| SRR6502092 | root | 100 mM NaCl | 15.69 | HC |
| SRR6502093 | root | 100 mM NaCl | 17.68 | HC |
| SRR6502094 | root | control | 10.30 | HC |
| SRR6502095 | root | control | 11.01 | HC |
| SRR6502096 | root | control | 9.95 | HC |
| SRR1740434 | root_differentiation_zone | wt | 9.00 | HC |
| SRR1740431 | root_elongation_zone | wt | 5.97 | HC |
| SRR1740432 | root_elongation_zone | wt | 5.58 | HC |
| SRR1740428 | root_meristematic_zone | wt | 6.56 | HC |
| SRR1740429 | root_meristematic_zone | wt | 5.57 | HC |
| SRR2154086 | seedling | wt | 10.39 | HC |
| SRR2154085 | seedling | wt | 7.52 | HC |
| SRR2154087 | seedling | wt | 6.96 | HC |
| SRR2857719 | seedling | drought_stress_0h | 5.76 | HC |
| SRR2857720 | seedling | drought_stress_1h | 4.14 | HC |
| SRR2857721 | seedling | drought_stress_6h | 3.92 | HC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 4.24 | HC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 8.67 | HC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 8.82 | HC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 12.11 | HC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 3.98 | HC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 7.98 | HC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 16.23 | HC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 8.90 | HC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 11.80 | HC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 10.17 | HC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 8.62 | HC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 7.56 | HC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 9.12 | HC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 18.47 | HC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 21.05 | HC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 24.50 | HC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 11.64 | HC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 10.70 | HC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 11.06 | HC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 6.19 | HC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 6.12 | HC |