| SRR358795 | callus | wt | 11.05 | HC |
| SRR358796 | callus | wt | 14.73 | HC |
| SRR358797 | callus | wt | 16.37 | HC |
| SRR358798 | callus | wt | 14.45 | HC |
| SRR6320473 | carpel | wt | 17.13 | HC |
| SRR6320498 | carpel | wt | 15.68 | HC |
| SRR5560728 | caryopsis | wild_type | 6.75 | HC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 3.90 | HC |
| SRR7265400 | coleoptile | 2dA | 5.27 | HC |
| SRR7265401 | coleoptile | 2dA | 4.92 | HC |
| SRR7265402 | coleoptile | 2dA | 4.86 | HC |
| SRR7265403 | coleoptile | 2dN | 7.99 | HC |
| SRR7265404 | coleoptile | 2dN | 7.06 | HC |
| SRR7265405 | coleoptile | 2dN | 7.20 | HC |
| SRR7265406 | coleoptile | 3dA | 5.41 | HC |
| SRR7265407 | coleoptile | 3dA | 6.35 | HC |
| SRR7265408 | coleoptile | 3dA | 3.49 | HC |
| SRR7265409 | coleoptile | 3dN | 8.39 | HC |
| SRR7265410 | coleoptile | 3dN | 7.19 | HC |
| SRR7265411 | coleoptile | 3dN | 7.65 | HC |
| SRR7265412 | coleoptile | 4dA | 25.21 | HC |
| SRR7265413 | coleoptile | 4dA | 29.46 | HC |
| SRR7265414 | coleoptile | 4dA | 26.82 | HC |
| SRR7265415 | coleoptile | 4dN | 7.23 | HC |
| SRR7265416 | coleoptile | 4dN | 6.00 | HC |
| SRR7265417 | coleoptile | 4dN | 6.23 | HC |
| SRR7265418 | coleoptile | 3dN1dA | 8.33 | HC |
| SRR7265419 | coleoptile | 3dN1dA | 7.55 | HC |
| SRR7265420 | coleoptile | 3dN1dA | 7.23 | HC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 4.79 | HC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 4.55 | HC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 4.81 | HC |
| SRR7265373 | embryo | dry seed 0 h | 6.33 | HC |
| SRR7265374 | embryo | dry seed 0 h | 5.91 | HC |
| SRR7265375 | embryo | dry seed 0 h | 2.10 | HC |
| SRR7265376 | embryo | 1hA | 16.60 | HC |
| SRR7265377 | embryo | 1hA | 19.58 | HC |
| SRR7265378 | embryo | 1hA | 18.96 | HC |
| SRR7265379 | embryo | 1hN | 10.90 | HC |
| SRR7265380 | embryo | 1hN | 12.56 | HC |
| SRR7265381 | embryo | 1hN | 12.29 | HC |
| SRR7265382 | embryo | 3hA | 39.15 | HC |
| SRR7265383 | embryo | 3hA | 32.92 | HC |
| SRR7265384 | embryo | 3hA | 36.67 | HC |
| SRR7265385 | embryo | 3hN | 18.04 | HC |
| SRR7265386 | embryo | 3hN | 16.62 | HC |
| SRR7265387 | embryo | 3hN | 15.89 | HC |
| SRR7265388 | embryo | 12hA | 6.43 | HC |
| SRR7265389 | embryo | 12hA | 8.22 | HC |
| SRR7265390 | embryo | 12hA | 6.59 | HC |
| SRR7265391 | embryo | 12hN | 8.28 | HC |
| SRR7265392 | embryo | 12hN | 6.88 | HC |
| SRR7265393 | embryo | 12hN | 7.37 | HC |
| SRR7265394 | embryo | 24hA | 6.88 | HC |
| SRR7265395 | embryo | 24hA | 7.38 | HC |
| SRR7265396 | embryo | 24hA | 5.84 | HC |
| SRR7265397 | embryo | 24hN | 7.49 | HC |
| SRR7265398 | embryo | 24hN | 6.44 | HC |
| SRR7265399 | embryo | 24hN | 7.27 | HC |
| SRR4457239 | flag_leaf | DAH20 | 4.52 | HC |
| SRR4457241 | flag_leaf | DAH28 | 4.49 | HC |
| SRR8240826 | leaf | wild_type | 3.52 | HC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 7.00 | HC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 46.11 | HC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 46.29 | HC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 40.51 | HC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 68.81 | HC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 56.66 | HC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 22.49 | HC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 41.30 | HC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 38.16 | HC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 74.05 | HC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 77.83 | HC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 35.96 | HC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 45.42 | HC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 62.24 | HC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 10.92 | HC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 49.51 | HC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 33.95 | HC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 11.00 | HC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 72.79 | HC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 79.63 | HC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 76.65 | HC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 61.70 | HC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 81.54 | HC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 74.60 | HC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 20.63 | HC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 32.64 | HC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 98.38 | HC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 8.48 | HC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 52.34 | HC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 39.86 | HC |
| SRR1761788 | leaf | "wild_type,drought,2" | 36.50 | HC |
| SRR1761789 | leaf | "wild_type,drought,2" | 32.95 | HC |
| SRR1761780 | leaf | "wild_type,drought,1" | 36.45 | HC |
| SRR1761781 | leaf | "wild_type,drought,1" | 32.91 | HC |
| SRR1761528 | leaf | drought | 36.45 | HC |
| SRR1761529 | leaf | drought | 32.93 | HC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 13.02 | HC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 14.34 | HC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 4.48 | HC |
| SRR3209771 | leaf | Drought;Long_Day | 6.47 | HC |
| SRR3209772 | leaf | Drought;Long_Day | 6.13 | HC |
| SRR3209774 | leaf | Watered;Short_Day | 4.29 | HC |
| SRR3209775 | leaf | Drought;Short_Day | 7.60 | HC |
| SRR3209776 | leaf | Drought;Short_Day | 8.28 | HC |
| SRR3209778 | leaf | Drought;Long_Day | 7.33 | HC |
| SRR3209780 | leaf | Drought;Short_Day | 5.51 | HC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 14.50 | HC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 10.40 | HC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 10.32 | HC |
| SRR1213693 | leaf | wt | 5.19 | HC |
| SRR6502085 | leaf | 100 mM NaCl | 7.40 | HC |
| SRR6502086 | leaf | 100 mM NaCl | 4.99 | HC |
| SRR6502099 | leaf | 100 mM NaCl | 5.99 | HC |
| SRR6502100 | leaf | control | 5.95 | HC |
| SRR6502101 | leaf | control | 5.44 | HC |
| SRR5856927 | leaf | control | 24.58 | HC |
| SRR5856928 | leaf | control | 17.69 | HC |
| SRR5856929 | leaf | control | 12.30 | HC |
| SRR5856930 | leaf | salt | 33.44 | HC |
| SRR5856931 | leaf | salt | 24.30 | HC |
| SRR5856932 | leaf | salt | 25.17 | HC |
| SRR5856933 | leaf | control | 17.30 | HC |
| SRR5856934 | leaf | control | 22.97 | HC |
| SRR5856935 | leaf | control | 32.12 | HC |
| SRR5856936 | leaf | salt | 31.30 | HC |
| SRR5856937 | leaf | salt | 25.39 | HC |
| SRR5856938 | leaf | salt | 21.34 | HC |
| SRR6168975 | leaf | none (control) | 6.18 | HC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 22.90 | HC |
| SRR6168979 | leaf | none (control) | 7.01 | HC |
| SRR6168980 | leaf | none (control) | 14.64 | HC |
| SRR6168981 | leaf | none (control) | 15.32 | HC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 13.19 | HC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 17.98 | HC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 15.29 | HC |
| SRR5110429 | panicle | Dawn | 5.35 | HC |
| SRR5110438 | panicle | Dawn + 7h | 4.69 | HC |
| SRR5110445 | panicle | Dusk | 4.74 | HC |
| SRR5110451 | panicle | Dawn + 14h | 4.45 | HC |
| SRR5110453 | panicle | Dawn + 17.5h | 3.61 | HC |
| SRR5110454 | panicle | Dawn + 17.5h | 3.86 | HC |
| SRR1213696 | endosprem | wt(milk grains) | 2.38 | HC |
| SRR1213697 | endosprem | wt(mature seeds) | 6.55 | HC |
| SRR1633182 | panicle | WT | 8.02 | HC |
| SRR1633185 | panicle | WT | 8.50 | HC |
| SRR5278374 | pistil | "Balilla,S1" | 7.26 | HC |
| SRR5278375 | pistil | "Balilla,S1" | 5.76 | HC |
| SRR5278376 | pistil | "Balilla,S2" | 7.85 | HC |
| SRR5278377 | pistil | "Balilla,S2" | 6.45 | HC |
| SRR5126147 | root | "mock,1_day" | 7.31 | HC |
| SRR5126148 | root | "mock,1_day" | 6.55 | HC |
| SRR5126149 | root | "mock,1_day" | 13.16 | HC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 43.77 | HC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 39.44 | HC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 42.91 | HC |
| SRR5126153 | root | "mock,7_days" | 7.22 | HC |
| SRR5126155 | root | "mock,7_days" | 9.86 | HC |
| SRR5126157 | root | "mock,7_days" | 20.39 | HC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 30.46 | HC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 43.15 | HC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 23.13 | HC |
| SRR5126165 | root | "mock,14_days" | 21.08 | HC |
| SRR5126167 | root | "mock,14_days" | 9.72 | HC |
| SRR5126169 | root | "mock,14_days" | 13.83 | HC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 28.26 | HC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 22.66 | HC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 20.32 | HC |
| SRR3472897 | root | nontransgenic_rice_plant | 4.96 | HC |
| SRR3472900 | root | nontransgenic_rice_plant | 6.22 | HC |
| SRR1213694 | root | wt | 7.16 | HC |
| SRR1213695 | root | wt | 4.10 | HC |
| SRR4947478 | root | control | 8.24 | HC |
| SRR4947479 | root | control | 8.71 | HC |
| SRR4947480 | root | control | 11.14 | HC |
| SRR4947481 | root | control | 8.91 | HC |
| SRR4947482 | root | Al | 17.75 | HC |
| SRR4947483 | root | Al | 4.77 | HC |
| SRR4947485 | root | Al | 5.82 | HC |
| SRR4947487 | root | control | 8.76 | HC |
| SRR4947488 | root | control | 5.06 | HC |
| SRR4947489 | root | control | 5.81 | HC |
| SRR4947491 | root | Al | 9.46 | HC |
| SRR4947494 | root | control | 7.31 | HC |
| SRR4947504 | root | control | 6.69 | HC |
| SRR4947505 | root | control | 6.70 | HC |
| SRR4947509 | root | Al | 8.78 | HC |
| SRR6502091 | root | 100 mM NaCl | 7.31 | HC |
| SRR6502092 | root | 100 mM NaCl | 6.24 | HC |
| SRR6502093 | root | 100 mM NaCl | 9.03 | HC |
| SRR6502094 | root | control | 9.30 | HC |
| SRR6502104 | root | 100 mM NaCl | 6.13 | HC |
| SRR6502105 | root | 100 mM NaCl | 5.36 | HC |
| SRR6502106 | root | control | 8.75 | HC |
| SRR6502108 | root | control | 10.53 | HC |
| SRR1740434 | root_differentiation_zone | wt | 7.30 | HC |
| SRR1740435 | root_differentiation_zone | wt | 6.69 | HC |
| SRR1740431 | root_elongation_zone | wt | 12.03 | HC |
| SRR2154086 | seedling | wt | 8.72 | HC |
| SRR2154082 | seedling | wt | 4.65 | HC |
| SRR2154084 | seedling | wt | 6.38 | HC |
| SRR2154085 | seedling | wt | 6.76 | HC |
| SRR2154087 | seedling | wt | 5.00 | HC |
| SRR3098741 | seedling | wt | 2.82 | HC |
| SRR2857720 | seedling | drought_stress_1h | 10.32 | HC |
| SRR2857721 | seedling | drought_stress_6h | 15.16 | HC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 6.78 | HC |
| SRR358791 | seedling | wt | 7.99 | HC |
| SRR358793 | seedling | wt | 9.24 | HC |
| SRR358794 | seedling | wt | 9.49 | HC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 4.85 | HC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 6.39 | HC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 5.08 | HC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 7.63 | HC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 24.57 | HC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 24.19 | HC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 28.09 | HC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 23.84 | HC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 26.20 | HC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 31.28 | HC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 5.76 | HC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 9.33 | HC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 11.62 | HC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 4.48 | HC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 8.49 | HC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 12.88 | HC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 4.20 | HC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 4.26 | HC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 4.53 | HC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 17.40 | HC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 18.75 | HC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 12.79 | HC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 12.03 | HC |
| SRR1617553 | shoot_apical_meristem | no collect | 15.10 | HC |
| SRR1617558 | shoot_apical_meristem | no collect | 8.72 | HC |