| SRR5560729 | caryopsis | wild_type | 18.15 | HC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 22.44 | HC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 23.40 | HC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 11.67 | HC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 14.67 | HC |
| SRR7265400 | coleoptile | 2dA | 17.38 | HC |
| SRR7265401 | coleoptile | 2dA | 19.59 | HC |
| SRR7265402 | coleoptile | 2dA | 15.30 | HC |
| SRR7265403 | coleoptile | 2dN | 11.90 | HC |
| SRR7265404 | coleoptile | 2dN | 10.95 | HC |
| SRR7265405 | coleoptile | 2dN | 13.86 | HC |
| SRR7265406 | coleoptile | 3dA | 10.18 | HC |
| SRR7265407 | coleoptile | 3dA | 8.19 | HC |
| SRR7265408 | coleoptile | 3dA | 7.13 | HC |
| SRR7265409 | coleoptile | 3dN | 6.92 | HC |
| SRR7265410 | coleoptile | 3dN | 7.63 | HC |
| SRR7265411 | coleoptile | 3dN | 6.21 | HC |
| SRR7265413 | coleoptile | 4dA | 16.00 | HC |
| SRR7265415 | coleoptile | 4dN | 8.56 | HC |
| SRR7265416 | coleoptile | 4dN | 5.93 | HC |
| SRR7265417 | coleoptile | 4dN | 4.73 | HC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 9.43 | HC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 15.56 | HC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 7.06 | HC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 5.59 | HC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 15.22 | HC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 10.82 | HC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 10.20 | HC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 7.20 | HC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 7.20 | HC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 12.60 | HC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 17.17 | HC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 15.51 | HC |
| SRR7265373 | embryo | dry seed 0 h | 8.18 | HC |
| SRR7265374 | embryo | dry seed 0 h | 11.19 | HC |
| SRR7265375 | embryo | dry seed 0 h | 2.07 | HC |
| SRR7265376 | embryo | 1hA | 6.32 | HC |
| SRR7265377 | embryo | 1hA | 10.50 | HC |
| SRR7265378 | embryo | 1hA | 8.82 | HC |
| SRR7265379 | embryo | 1hN | 8.94 | HC |
| SRR7265380 | embryo | 1hN | 7.44 | HC |
| SRR7265381 | embryo | 1hN | 7.34 | HC |
| SRR7265382 | embryo | 3hA | 6.90 | HC |
| SRR7265383 | embryo | 3hA | 7.30 | HC |
| SRR7265384 | embryo | 3hA | 7.41 | HC |
| SRR7265385 | embryo | 3hN | 7.03 | HC |
| SRR7265386 | embryo | 3hN | 7.60 | HC |
| SRR7265387 | embryo | 3hN | 6.37 | HC |
| SRR7265388 | embryo | 12hA | 14.69 | HC |
| SRR7265389 | embryo | 12hA | 16.05 | HC |
| SRR7265390 | embryo | 12hA | 14.95 | HC |
| SRR7265391 | embryo | 12hN | 11.99 | HC |
| SRR7265392 | embryo | 12hN | 12.34 | HC |
| SRR7265393 | embryo | 12hN | 12.90 | HC |
| SRR7265394 | embryo | 24hA | 8.32 | HC |
| SRR7265395 | embryo | 24hA | 16.89 | HC |
| SRR7265396 | embryo | 24hA | 15.05 | HC |
| SRR7265397 | embryo | 24hN | 13.12 | HC |
| SRR7265398 | embryo | 24hN | 16.52 | HC |
| SRR7265399 | embryo | 24hN | 13.08 | HC |
| SRR1213690 | flower | wt(flower buds) | 5.83 | HC |
| SRR1213691 | flower | wt | 14.75 | HC |
| SRR8240824 | leaf | wild_type | 4.62 | HC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 10.34 | HC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 12.83 | HC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 11.21 | HC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 8.01 | HC |
| SRR8611901 | leaf | Non-inoculated | 4.61 | HC |
| SRR8611902 | leaf | Non-inoculated | 3.67 | HC |
| SRR6216698 | leaf | nontransgenic rice plant | 7.27 | HC |
| SRR6216699 | leaf | nontransgenic rice plant | 5.96 | HC |
| SRR5110432 | panicle | Dawn | 6.37 | HC |
| SRR5110453 | panicle | Dawn + 17.5h | 3.89 | HC |
| SRR5110459 | panicle | Dawn + 21h | 7.97 | HC |
| SRR1633182 | panicle | WT | 196.43 | HC |
| SRR1633185 | panicle | WT | 330.52 | HC |
| SRR5278374 | pistil | "Balilla,S1" | 7.37 | HC |
| SRR5278375 | pistil | "Balilla,S1" | 7.16 | HC |
| SRR5278376 | pistil | "Balilla,S2" | 8.46 | HC |
| SRR5278377 | pistil | "Balilla,S2" | 12.21 | HC |
| SRR5278378 | pistil | "Balilla,S3" | 37.50 | HC |
| SRR5278379 | pistil | "Balilla,S3" | 24.22 | HC |
| SRR5126148 | root | "mock,1_day" | 5.20 | HC |
| SRR5126153 | root | "mock,7_days" | 5.95 | HC |
| SRR5126155 | root | "mock,7_days" | 6.49 | HC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 21.81 | HC |
| SRR5126165 | root | "mock,14_days" | 5.24 | HC |
| SRR1740436 | root_differentiation_zone | wt | 4.19 | HC |
| SRR1740432 | root_elongation_zone | wt | 4.29 | HC |
| SRR2154086 | seedling | wt | 5.58 | HC |
| SRR2154083 | seedling | wt | 4.14 | HC |
| SRR2154087 | seedling | wt | 4.77 | HC |
| SRR3098741 | seedling | wt | 3.80 | HC |
| SRR3098742 | seedling | wt | 8.72 | HC |
| SRR3098743 | seedling | wt | 7.38 | HC |
| SRR2857719 | seedling | drought_stress_0h | 12.79 | HC |
| SRR2857720 | seedling | drought_stress_1h | 14.83 | HC |
| SRR2857721 | seedling | drought_stress_6h | 14.46 | HC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 8.35 | HC |
| SRR1944583 | seedling | no_treatment | 9.30 | HC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 9.39 | HC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 8.81 | HC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 13.94 | HC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 7.76 | HC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 7.82 | HC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 4.69 | HC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 5.72 | HC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 5.52 | HC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 6.81 | HC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 5.30 | HC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 5.60 | HC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 8.20 | HC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 4.24 | HC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 6.73 | HC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 36.36 | HC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 28.89 | HC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 25.89 | HC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 19.30 | HC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 44.02 | HC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 20.46 | HC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 23.25 | HC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 20.10 | HC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 19.78 | HC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 16.59 | HC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 17.55 | HC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 18.30 | HC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 37.89 | HC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 31.73 | HC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 31.88 | HC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 26.70 | HC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 23.52 | HC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 24.40 | HC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 21.79 | HC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 23.71 | HC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 16.90 | HC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 25.19 | HC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 36.79 | HC |
| SRR1617549 | shoot_apical_meristem | no collect | 18.57 | HC |
| SRR1617550 | shoot_apical_meristem | no collect | 29.99 | HC |
| SRR1617553 | shoot_apical_meristem | no collect | 18.03 | HC |
| SRR1617554 | shoot_apical_meristem | no collect | 23.31 | HC |
| SRR1617556 | shoot_apical_meristem | no collect | 18.31 | HC |
| SRR1617557 | shoot_apical_meristem | no collect | 21.26 | HC |
| SRR1617558 | shoot_apical_meristem | no collect | 26.92 | HC |
| SRR1617559 | shoot_apical_meristem | no collect | 28.22 | HC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 7.45 | HC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 4.07 | HC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 14.40 | HC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 9.87 | HC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 13.11 | HC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 9.54 | HC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 5.18 | HC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 5.26 | HC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 3.58 | HC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 7.22 | HC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 6.94 | HC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 6.65 | HC |