| SRR4457264 | 2nd_leaf | DAH44 | 6.35 | HC |
| SRR358795 | callus | wt | 10.44 | HC |
| SRR5560729 | caryopsis | wild_type | 6.72 | HC |
| SRR7265400 | coleoptile | 2dA | 5.49 | HC |
| SRR7265401 | coleoptile | 2dA | 4.63 | HC |
| SRR7265402 | coleoptile | 2dA | 5.33 | HC |
| SRR7265409 | coleoptile | 3dN | 4.80 | HC |
| SRR7265373 | embryo | dry seed 0 h | 4.80 | HC |
| SRR7265374 | embryo | dry seed 0 h | 6.32 | HC |
| SRR7265376 | embryo | 1hA | 4.21 | HC |
| SRR7265378 | embryo | 1hA | 4.25 | HC |
| SRR7265381 | embryo | 1hN | 4.53 | HC |
| SRR7265382 | embryo | 3hA | 5.41 | HC |
| SRR7265383 | embryo | 3hA | 6.86 | HC |
| SRR7265384 | embryo | 3hA | 8.04 | HC |
| SRR7265387 | embryo | 3hN | 3.50 | HC |
| SRR7265388 | embryo | 12hA | 7.13 | HC |
| SRR7265390 | embryo | 12hA | 5.12 | HC |
| SRR7265392 | embryo | 12hN | 6.07 | HC |
| SRR7265393 | embryo | 12hN | 5.09 | HC |
| SRR7265394 | embryo | 24hA | 6.65 | HC |
| SRR7265395 | embryo | 24hA | 6.34 | HC |
| SRR7265397 | embryo | 24hN | 5.77 | HC |
| SRR7265398 | embryo | 24hN | 4.80 | HC |
| SRR1213690 | flower | wt(flower buds) | 4.46 | HC |
| SRR8060836 | leaf | wild_type | 3.91 | HC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 5.04 | HC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 7.47 | HC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 6.16 | HC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 6.26 | HC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 5.70 | HC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 4.04 | HC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 5.24 | HC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 5.64 | HC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 6.99 | HC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 6.32 | HC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 5.31 | HC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 4.81 | HC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 5.37 | HC |
| SRR504365 | leaf | wt | 4.44 | HC |
| SRR6216698 | leaf | nontransgenic rice plant | 3.80 | HC |
| SRR5110429 | panicle | Dawn | 5.32 | HC |
| SRR5110431 | panicle | Dawn | 4.86 | HC |
| SRR5110435 | panicle | Dawn + 3.5h | 3.19 | HC |
| SRR5110440 | panicle | Dawn + 7h | 7.70 | HC |
| SRR5110443 | panicle | Dawn + 10.5h | 6.31 | HC |
| SRR5110446 | panicle | Dusk | 6.12 | HC |
| SRR5110447 | panicle | Dusk | 5.22 | HC |
| SRR5110448 | panicle | Dusk | 6.80 | HC |
| SRR5110452 | panicle | Dawn + 14h | 5.93 | HC |
| SRR5110453 | panicle | Dawn + 17.5h | 4.00 | HC |
| SRR5110460 | panicle | Dawn + 21h | 7.03 | HC |
| SRR1213696 | endosprem | wt(milk grains) | 2.45 | HC |
| SRR1633185 | panicle | WT | 8.00 | HC |
| SRR5278378 | pistil | "Balilla,S3" | 7.37 | HC |
| SRR5126147 | root | "mock,1_day" | 4.63 | HC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 7.29 | HC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 8.06 | HC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 4.59 | HC |
| SRR5126153 | root | "mock,7_days" | 9.25 | HC |
| SRR5126155 | root | "mock,7_days" | 5.86 | HC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 7.58 | HC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 7.56 | HC |
| SRR5126165 | root | "mock,14_days" | 8.68 | HC |
| SRR5126167 | root | "mock,14_days" | 4.57 | HC |
| SRR5126169 | root | "mock,14_days" | 8.35 | HC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 6.80 | HC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 6.11 | HC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 8.86 | HC |
| SRR1213695 | root | wt | 3.86 | HC |
| SRR6502093 | root | 100 mM NaCl | 6.04 | HC |
| SRR6502103 | root | 100 mM NaCl | 6.71 | HC |
| SRR6502105 | root | 100 mM NaCl | 5.15 | HC |
| SRR6502108 | root | control | 4.82 | HC |
| SRR1740432 | root_elongation_zone | wt | 5.85 | HC |
| SRR1740433 | root_elongation_zone | wt | 3.63 | HC |
| SRR1740429 | root_meristematic_zone | wt | 4.71 | HC |
| SRR1740430 | root_meristematic_zone | wt | 5.29 | HC |
| SRR2154084 | seedling | wt | 4.73 | HC |
| SRR2154085 | seedling | wt | 4.73 | HC |
| SRR3098742 | seedling | wt | 4.16 | HC |
| SRR2857719 | seedling | drought_stress_0h | 5.84 | HC |
| SRR2857720 | seedling | drought_stress_1h | 4.48 | HC |
| SRR358792 | seedling | wt | 10.74 | HC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 10.53 | HC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 7.93 | HC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 8.85 | HC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 9.49 | HC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 7.57 | HC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 10.23 | HC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 8.94 | HC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 8.90 | HC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 4.08 | HC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 4.75 | HC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 4.77 | HC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 7.62 | HC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 4.07 | HC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 2.36 | HC |