| SRR4457252 | 2nd_leaf | DAH12 | 5.53 | HC |
| SRR4457253 | 2nd_leaf | DAH12 | 5.25 | HC |
| SRR4457255 | 2nd_leaf | DAH20 | 7.21 | HC |
| SRR4457257 | 2nd_leaf | DAH20 | 5.05 | HC |
| SRR4457258 | 2nd_leaf | DAH28 | 7.13 | HC |
| SRR4457259 | 2nd_leaf | DAH28 | 7.43 | HC |
| SRR4457260 | 2nd_leaf | DAH28 | 9.00 | HC |
| SRR4457263 | 2nd_leaf | DAH36 | 6.40 | HC |
| SRR4457264 | 2nd_leaf | DAH44 | 19.71 | HC |
| SRR4457265 | 2nd_leaf | DAH44 | 15.26 | HC |
| SRR4457266 | 2nd_leaf | DAH44 | 10.67 | HC |
| SRR358795 | callus | wt | 26.96 | HC |
| SRR358796 | callus | wt | 28.16 | HC |
| SRR358797 | callus | wt | 19.13 | HC |
| SRR358798 | callus | wt | 23.10 | HC |
| SRR6320498 | carpel | wt | 8.13 | HC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 6.34 | HC |
| SRR7265403 | coleoptile | 2dN | 4.49 | HC |
| SRR7265407 | coleoptile | 3dA | 3.20 | HC |
| SRR7265413 | coleoptile | 4dA | 6.31 | HC |
| SRR7265373 | embryo | dry seed 0 h | 4.95 | HC |
| SRR7265375 | embryo | dry seed 0 h | 4.53 | HC |
| SRR7265379 | embryo | 1hN | 5.78 | HC |
| SRR7265384 | embryo | 3hA | 4.63 | HC |
| SRR7265385 | embryo | 3hN | 4.75 | HC |
| SRR7265399 | embryo | 24hN | 5.75 | HC |
| SRR4457234 | flag_leaf | DAH12 | 3.43 | HC |
| SRR4457235 | flag_leaf | DAH12 | 13.02 | HC |
| SRR4457237 | flag_leaf | DAH20 | 6.25 | HC |
| SRR4457238 | flag_leaf | DAH20 | 6.17 | HC |
| SRR4457239 | flag_leaf | DAH20 | 7.59 | HC |
| SRR4457240 | flag_leaf | DAH28 | 7.13 | HC |
| SRR4457241 | flag_leaf | DAH28 | 25.41 | HC |
| SRR4457242 | flag_leaf | DAH28 | 7.66 | HC |
| SRR4457244 | flag_leaf | DAH36 | 5.11 | HC |
| SRR4457245 | flag_leaf | DAH36 | 6.66 | HC |
| SRR4457246 | flag_leaf | DAH44 | 7.31 | HC |
| SRR4457247 | flag_leaf | DAH44 | 7.14 | HC |
| SRR4457248 | flag_leaf | DAH44 | 14.20 | HC |
| SRR8240824 | leaf | wild_type | 2.98 | HC |
| SRR8240825 | leaf | wild_type | 2.88 | HC |
| SRR8240818 | leaf | wild_type | 2.78 | HC |
| SRR8240819 | leaf | wild_type | 4.61 | HC |
| SRR8240820 | leaf | wild_type | 4.60 | HC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 4.58 | HC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 27.34 | HC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 10.42 | HC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 5.16 | HC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 23.29 | HC |
| SRR1761791 | leaf | "wild_type,control,2" | 32.69 | HC |
| SRR1761783 | leaf | "wild_type,control,1" | 32.69 | HC |
| SRR1761531 | leaf | control | 32.69 | HC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 14.83 | HC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 9.25 | HC |
| SRR6417968 | leaf | H2O_control | 5.27 | HC |
| SRR6417969 | leaf | H2O_control | 5.20 | HC |
| SRR3209769 | leaf | Watered;Long_Day | 7.71 | HC |
| SRR3209770 | leaf | Watered;Long_Day | 7.68 | HC |
| SRR3209771 | leaf | Drought;Long_Day | 4.86 | HC |
| SRR3209772 | leaf | Drought;Long_Day | 5.72 | HC |
| SRR3209773 | leaf | Watered;Short_Day | 4.17 | HC |
| SRR3209774 | leaf | Watered;Short_Day | 4.40 | HC |
| SRR3209775 | leaf | Drought;Short_Day | 4.52 | HC |
| SRR3209776 | leaf | Drought;Short_Day | 5.73 | HC |
| SRR3209777 | leaf | Watered;Long_Day | 6.91 | HC |
| SRR3209778 | leaf | Drought;Long_Day | 13.55 | HC |
| SRR6502097 | leaf | 100 mM NaCl | 38.05 | HC |
| SRR6502101 | leaf | control | 11.52 | HC |
| SRR5856934 | leaf | control | 2.75 | HC |
| SRR5856937 | leaf | salt | 1.97 | HC |
| SRR6168974 | leaf | none (control) | 6.84 | HC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 3.74 | HC |
| SRR6168979 | leaf | none (control) | 3.54 | HC |
| SRR6168980 | leaf | none (control) | 3.41 | HC |
| SRR6168981 | leaf | none (control) | 2.73 | HC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 3.00 | HC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 4.14 | HC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 8.31 | HC |
| SRR8582888 | panicle | AM | 13.31 | HC |
| SRR5110429 | panicle | Dawn | 8.20 | HC |
| SRR5110431 | panicle | Dawn | 12.58 | HC |
| SRR5110435 | panicle | Dawn + 3.5h | 4.42 | HC |
| SRR5110436 | panicle | Dawn + 3.5h | 5.17 | HC |
| SRR5110437 | panicle | Dawn + 7h | 9.52 | HC |
| SRR5110438 | panicle | Dawn + 7h | 14.04 | HC |
| SRR5110440 | panicle | Dawn + 7h | 6.23 | HC |
| SRR5110441 | panicle | Dawn + 10.5h | 8.43 | HC |
| SRR5110442 | panicle | Dawn + 10.5h | 4.54 | HC |
| SRR5110443 | panicle | Dawn + 10.5h | 13.54 | HC |
| SRR5110445 | panicle | Dusk | 18.41 | HC |
| SRR5110446 | panicle | Dusk | 14.58 | HC |
| SRR5110447 | panicle | Dusk | 16.12 | HC |
| SRR5110448 | panicle | Dusk | 21.51 | HC |
| SRR5110449 | panicle | Dawn + 14h | 18.67 | HC |
| SRR5110450 | panicle | Dawn + 14h | 5.35 | HC |
| SRR5110451 | panicle | Dawn + 14h | 9.38 | HC |
| SRR5110452 | panicle | Dawn + 14h | 15.30 | HC |
| SRR5110453 | panicle | Dawn + 17.5h | 8.03 | HC |
| SRR5110454 | panicle | Dawn + 17.5h | 4.89 | HC |
| SRR5110458 | panicle | Dawn + 21h | 6.84 | HC |
| SRR5110459 | panicle | Dawn + 21h | 26.56 | HC |
| SRR5110460 | panicle | Dawn + 21h | 9.93 | HC |
| SRR1213697 | endosprem | wt(mature seeds) | 6.27 | HC |
| SRR1633182 | panicle | WT | 25.84 | HC |
| SRR1633185 | panicle | WT | 25.11 | HC |
| SRR5278374 | pistil | "Balilla,S1" | 4.27 | HC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 8.19 | HC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 5.15 | HC |
| SRR5126153 | root | "mock,7_days" | 5.97 | HC |
| SRR5126167 | root | "mock,14_days" | 4.23 | HC |
| SRR3472897 | root | nontransgenic_rice_plant | 2.95 | HC |
| SRR1213695 | root | wt | 5.09 | HC |
| SRR4947478 | root | control | 7.08 | HC |
| SRR4947479 | root | control | 5.65 | HC |
| SRR4947482 | root | Al | 6.77 | HC |
| SRR4947483 | root | Al | 5.76 | HC |
| SRR4947487 | root | control | 9.35 | HC |
| SRR4947488 | root | control | 5.71 | HC |
| SRR4947489 | root | control | 5.18 | HC |
| SRR4947490 | root | Al | 6.71 | HC |
| SRR4947494 | root | control | 5.89 | HC |
| SRR4947498 | root | Al | 7.34 | HC |
| SRR4947499 | root | Al | 8.59 | HC |
| SRR4947500 | root | Al | 5.77 | HC |
| SRR4947501 | root | Al | 14.21 | HC |
| SRR4947502 | root | control | 6.12 | HC |
| SRR4947503 | root | control | 6.22 | HC |
| SRR4947505 | root | control | 9.44 | HC |
| SRR4947506 | root | Al | 4.22 | HC |
| SRR4947507 | root | Al | 6.71 | HC |
| SRR4947508 | root | Al | 5.21 | HC |
| SRR4947509 | root | Al | 5.77 | HC |
| SRR6502094 | root | control | 9.30 | HC |
| SRR6502096 | root | control | 5.36 | HC |
| SRR6502104 | root | 100 mM NaCl | 7.26 | HC |
| SRR6502108 | root | control | 5.03 | HC |
| SRR2154082 | seedling | wt | 14.80 | HC |
| SRR2154083 | seedling | wt | 4.83 | HC |
| SRR2154084 | seedling | wt | 4.65 | HC |
| SRR2154085 | seedling | wt | 7.30 | HC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 6.13 | HC |
| SRR358791 | seedling | wt | 35.01 | HC |
| SRR358792 | seedling | wt | 35.00 | HC |
| SRR358793 | seedling | wt | 31.12 | HC |
| SRR358794 | seedling | wt | 28.64 | HC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 8.17 | HC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 7.60 | HC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 11.31 | HC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 16.10 | HC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 15.75 | HC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 12.51 | HC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 10.39 | HC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 6.07 | HC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 11.50 | HC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 13.52 | HC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 101.44 | HC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 102.79 | HC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 105.62 | HC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 109.68 | HC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 110.54 | HC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 109.60 | HC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 50.86 | HC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 65.09 | HC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 61.13 | HC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 46.35 | HC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 59.85 | HC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 83.96 | HC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 6.49 | HC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 12.38 | HC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 3.27 | HC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 3.84 | HC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 2.92 | HC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 10.99 | HC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 4.34 | HC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 15.42 | HC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 4.98 | HC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 17.88 | HC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 16.48 | HC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 16.21 | HC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 17.14 | HC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 11.78 | HC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 10.74 | HC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 34.33 | HC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 18.84 | HC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 30.11 | HC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 17.17 | HC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 9.93 | HC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 29.34 | HC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 15.20 | HC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 18.63 | HC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 14.15 | HC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 11.91 | HC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 30.33 | HC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 13.37 | HC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 41.33 | HC |
| SRR1617556 | shoot_apical_meristem | no collect | 44.22 | HC |
| SRR1617557 | shoot_apical_meristem | no collect | 48.32 | HC |
| SRR1617558 | shoot_apical_meristem | no collect | 48.57 | HC |
| SRR1617559 | shoot_apical_meristem | no collect | 7.58 | HC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 6.35 | HC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 6.71 | HC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 7.19 | HC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 6.38 | HC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 6.11 | HC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 2.89 | HC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 3.29 | HC |