| SRR5560729 | caryopsis | wild_type | 7.27 | HC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 4.73 | HC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 5.50 | HC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 3.80 | HC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 4.92 | HC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 7.43 | HC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 10.59 | HC |
| SRR2338868 | endosprem | high_temperature | 3.58 | HC |
| SRR4457235 | flag_leaf | DAH12 | 3.60 | HC |
| SRR4457236 | flag_leaf | DAH12 | 3.71 | HC |
| SRR4457237 | flag_leaf | DAH20 | 3.87 | HC |
| SRR4457238 | flag_leaf | DAH20 | 4.26 | HC |
| SRR4457240 | flag_leaf | DAH28 | 5.86 | HC |
| SRR4457241 | flag_leaf | DAH28 | 4.01 | HC |
| SRR1213690 | flower | wt(flower buds) | 4.14 | HC |
| SRR1213691 | flower | wt | 6.81 | HC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 5.77 | HC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 4.54 | HC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 5.61 | HC |
| SRR1761790 | leaf | "wild_type,control,2" | 6.40 | HC |
| SRR1761791 | leaf | "wild_type,control,2" | 6.18 | HC |
| SRR1761782 | leaf | "wild_type,control,1" | 6.40 | HC |
| SRR1761783 | leaf | "wild_type,control,1" | 6.18 | HC |
| SRR1761530 | leaf | control | 6.40 | HC |
| SRR1761531 | leaf | control | 6.18 | HC |
| SRR3209769 | leaf | Watered;Long_Day | 4.80 | HC |
| SRR3209770 | leaf | Watered;Long_Day | 4.95 | HC |
| SRR3209771 | leaf | Drought;Long_Day | 7.49 | HC |
| SRR3209772 | leaf | Drought;Long_Day | 7.10 | HC |
| SRR3209773 | leaf | Watered;Short_Day | 5.02 | HC |
| SRR3209775 | leaf | Drought;Short_Day | 5.69 | HC |
| SRR3209776 | leaf | Drought;Short_Day | 6.00 | HC |
| SRR3209777 | leaf | Watered;Long_Day | 5.11 | HC |
| SRR3209778 | leaf | Drought;Long_Day | 8.94 | HC |
| SRR3209780 | leaf | Drought;Short_Day | 7.90 | HC |
| SRR8611900 | leaf | Non-inoculated | 4.52 | HC |
| SRR8611901 | leaf | Non-inoculated | 4.98 | HC |
| SRR8611902 | leaf | Non-inoculated | 3.86 | HC |
| SRR6216698 | leaf | nontransgenic rice plant | 6.80 | HC |
| SRR6216699 | leaf | nontransgenic rice plant | 6.42 | HC |
| SRR1213692 | leaf | wt | 4.91 | HC |
| SRR6502085 | leaf | 100 mM NaCl | 7.35 | HC |
| SRR6502088 | leaf | control | 6.20 | HC |
| SRR6502090 | leaf | control | 4.75 | HC |
| SRR6168973 | leaf | none (control) | 4.48 | HC |
| SRR6168974 | leaf | none (control) | 5.56 | HC |
| SRR8582889 | panicle | AM | 1.80 | HC |
| SRR1213696 | endosprem | wt(milk grains) | 2.06 | HC |
| SRR1633182 | panicle | WT | 6.41 | HC |
| SRR1633185 | panicle | WT | 8.09 | HC |
| SRR5278374 | pistil | "Balilla,S1" | 4.65 | HC |
| SRR5278375 | pistil | "Balilla,S1" | 4.27 | HC |
| SRR5278376 | pistil | "Balilla,S2" | 5.60 | HC |
| SRR5278377 | pistil | "Balilla,S2" | 6.44 | HC |
| SRR5278378 | pistil | "Balilla,S3" | 12.78 | HC |
| SRR5278379 | pistil | "Balilla,S3" | 12.84 | HC |
| SRR5126147 | root | "mock,1_day" | 4.84 | HC |
| SRR5126148 | root | "mock,1_day" | 4.72 | HC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 5.33 | HC |
| SRR6502091 | root | 100 mM NaCl | 7.49 | HC |
| SRR6502092 | root | 100 mM NaCl | 15.30 | HC |
| SRR6502093 | root | 100 mM NaCl | 10.45 | HC |
| SRR6502094 | root | control | 13.16 | HC |
| SRR6502095 | root | control | 11.70 | HC |
| SRR6502096 | root | control | 12.30 | HC |
| SRR1740435 | root_differentiation_zone | wt | 3.72 | HC |
| SRR1740431 | root_elongation_zone | wt | 3.93 | HC |
| SRR1740432 | root_elongation_zone | wt | 3.88 | HC |
| SRR1740433 | root_elongation_zone | wt | 3.74 | HC |
| SRR1740428 | root_meristematic_zone | wt | 5.76 | HC |
| SRR1740429 | root_meristematic_zone | wt | 5.49 | HC |
| SRR1740430 | root_meristematic_zone | wt | 5.68 | HC |
| SRR2154087 | seedling | wt | 4.45 | HC |
| SRR3098741 | seedling | wt | 3.06 | HC |
| SRR3098742 | seedling | wt | 3.08 | HC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 4.95 | HC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 4.77 | HC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 6.44 | HC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 11.19 | HC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 10.43 | HC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 4.43 | HC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 3.67 | HC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 6.02 | HC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 4.31 | HC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 4.77 | HC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 5.01 | HC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 6.03 | HC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 2.86 | HC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 4.66 | HC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 22.72 | HC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 27.07 | HC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 21.54 | HC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 23.03 | HC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 24.46 | HC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 18.90 | HC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 20.79 | HC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 25.36 | HC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 22.98 | HC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 19.79 | HC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 21.37 | HC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 21.26 | HC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 23.86 | HC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 25.76 | HC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 24.72 | HC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 27.74 | HC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 23.00 | HC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 25.92 | HC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 27.13 | HC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 21.36 | HC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 24.28 | HC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 25.45 | HC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 26.21 | HC |
| SRR1617553 | shoot_apical_meristem | no collect | 10.70 | HC |
| SRR1617554 | shoot_apical_meristem | no collect | 11.02 | HC |
| SRR1617556 | shoot_apical_meristem | no collect | 11.50 | HC |
| SRR1617557 | shoot_apical_meristem | no collect | 9.17 | HC |
| SRR1617558 | shoot_apical_meristem | no collect | 9.84 | HC |
| SRR1617559 | shoot_apical_meristem | no collect | 9.70 | HC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 11.66 | HC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 11.28 | HC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 10.53 | HC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 11.06 | HC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 9.99 | HC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 12.28 | HC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 8.64 | HC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 9.32 | HC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 14.17 | HC |