| SRR3745125 | anther | wt | 17.12 | HC |
| SRR3745126 | anther | wt | 15.79 | HC |
| SRR3745127 | anther | wt | 18.50 | HC |
| SRR5560727 | caryopsis | wild_type | 20.32 | HC |
| SRR5560728 | caryopsis | wild_type | 23.06 | HC |
| SRR5560729 | caryopsis | wild_type | 23.80 | HC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 17.19 | HC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 21.91 | HC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 15.20 | HC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 10.37 | HC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 33.49 | HC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 32.35 | HC |
| SRR2338868 | endosprem | high_temperature | 5.65 | HC |
| SRR2338869 | endosprem | high_temperature | 5.25 | HC |
| SRR976168 | flag_leaf | wild_type | 4.60 | HC |
| SRR1213690 | flower | wt(flower buds) | 7.11 | HC |
| SRR1213691 | flower | wt | 11.83 | HC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 18.40 | HC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 16.67 | HC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 12.44 | HC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 14.79 | HC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 5.35 | HC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 5.44 | HC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 4.54 | HC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 4.47 | HC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 5.61 | HC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 5.34 | HC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 5.37 | HC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 5.85 | HC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 6.20 | HC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 5.65 | HC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 5.93 | HC |
| SRR1761789 | leaf | "wild_type,drought,2" | 5.51 | HC |
| SRR1761781 | leaf | "wild_type,drought,1" | 5.51 | HC |
| SRR1761529 | leaf | drought | 5.51 | HC |
| SRR504365 | leaf | wt | 4.97 | HC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 4.11 | HC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 4.17 | HC |
| SRR6417968 | leaf | H2O_control | 4.06 | HC |
| SRR6417969 | leaf | H2O_control | 5.58 | HC |
| SRR3209769 | leaf | Watered;Long_Day | 5.14 | HC |
| SRR3209770 | leaf | Watered;Long_Day | 5.99 | HC |
| SRR3209772 | leaf | Drought;Long_Day | 6.12 | HC |
| SRR3209773 | leaf | Watered;Short_Day | 7.29 | HC |
| SRR3209774 | leaf | Watered;Short_Day | 7.25 | HC |
| SRR3209775 | leaf | Drought;Short_Day | 5.92 | HC |
| SRR3209776 | leaf | Drought;Short_Day | 6.51 | HC |
| SRR3209777 | leaf | Watered;Long_Day | 20.71 | HC |
| SRR3209778 | leaf | Drought;Long_Day | 7.66 | HC |
| SRR3209779 | leaf | Watered;Short_Day | 11.39 | HC |
| SRR3209780 | leaf | Drought;Short_Day | 8.47 | HC |
| SRR8611900 | leaf | Non-inoculated | 16.88 | HC |
| SRR8611901 | leaf | Non-inoculated | 18.68 | HC |
| SRR8611902 | leaf | Non-inoculated | 18.01 | HC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 20.31 | HC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 21.40 | HC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 19.49 | HC |
| SRR6216698 | leaf | nontransgenic rice plant | 38.00 | HC |
| SRR6216699 | leaf | nontransgenic rice plant | 55.04 | HC |
| SRR1213692 | leaf | wt | 5.06 | HC |
| SRR1213693 | leaf | wt | 4.56 | HC |
| SRR6502086 | leaf | 100 mM NaCl | 5.25 | HC |
| SRR6502087 | leaf | 100 mM NaCl | 8.53 | HC |
| SRR6168973 | leaf | none (control) | 180.33 | HC |
| SRR6168974 | leaf | none (control) | 223.21 | HC |
| SRR6168975 | leaf | none (control) | 123.05 | HC |
| SRR6168979 | leaf | none (control) | 5.73 | HC |
| SRR6168980 | leaf | none (control) | 8.36 | HC |
| SRR6168981 | leaf | none (control) | 23.12 | HC |
| SRR8582888 | panicle | AM | 29.67 | HC |
| SRR8582889 | panicle | AM | 36.07 | HC |
| SRR8582890 | panicle | AM | 25.11 | HC |
| SRR8582891 | panicle | PM | 75.09 | HC |
| SRR8582892 | panicle | PM | 25.83 | HC |
| SRR8582893 | panicle | PM | 104.45 | HC |
| SRR1213696 | endosprem | wt(milk grains) | 2.02 | HC |
| SRR1633182 | panicle | WT | 54.52 | HC |
| SRR1633185 | panicle | WT | 62.24 | HC |
| SRR5278374 | pistil | "Balilla,S1" | 12.88 | HC |
| SRR5278375 | pistil | "Balilla,S1" | 9.85 | HC |
| SRR5278376 | pistil | "Balilla,S2" | 26.86 | HC |
| SRR5278377 | pistil | "Balilla,S2" | 23.65 | HC |
| SRR5278378 | pistil | "Balilla,S3" | 38.51 | HC |
| SRR5278379 | pistil | "Balilla,S3" | 88.52 | HC |
| SRR5126147 | root | "mock,1_day" | 12.59 | HC |
| SRR5126148 | root | "mock,1_day" | 19.89 | HC |
| SRR5126149 | root | "mock,1_day" | 16.62 | HC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 11.58 | HC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 7.50 | HC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 4.90 | HC |
| SRR5126153 | root | "mock,7_days" | 13.39 | HC |
| SRR5126155 | root | "mock,7_days" | 21.08 | HC |
| SRR5126157 | root | "mock,7_days" | 10.88 | HC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 10.72 | HC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 7.20 | HC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 16.22 | HC |
| SRR5126165 | root | "mock,14_days" | 10.53 | HC |
| SRR5126167 | root | "mock,14_days" | 9.65 | HC |
| SRR5126169 | root | "mock,14_days" | 23.24 | HC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 9.16 | HC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 11.79 | HC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 11.26 | HC |
| SRR3472897 | root | nontransgenic_rice_plant | 10.83 | HC |
| SRR3472900 | root | nontransgenic_rice_plant | 10.00 | HC |
| SRR1213694 | root | wt | 7.23 | HC |
| SRR6502092 | root | 100 mM NaCl | 11.66 | HC |
| SRR6502093 | root | 100 mM NaCl | 8.96 | HC |
| SRR6502094 | root | control | 10.65 | HC |
| SRR6502095 | root | control | 8.64 | HC |
| SRR6502096 | root | control | 9.25 | HC |
| SRR1740434 | root_differentiation_zone | wt | 8.90 | HC |
| SRR1740435 | root_differentiation_zone | wt | 19.12 | HC |
| SRR1740436 | root_differentiation_zone | wt | 21.96 | HC |
| SRR1740431 | root_elongation_zone | wt | 18.96 | HC |
| SRR1740432 | root_elongation_zone | wt | 20.74 | HC |
| SRR1740433 | root_elongation_zone | wt | 23.25 | HC |
| SRR1740428 | root_meristematic_zone | wt | 10.16 | HC |
| SRR1740429 | root_meristematic_zone | wt | 10.15 | HC |
| SRR1740430 | root_meristematic_zone | wt | 13.68 | HC |
| SRR6441554 | seedling | wild_type | 23.27 | HC |
| SRR6441555 | seedling | wild_type | 26.03 | HC |
| SRR2154086 | seedling | wt | 10.45 | HC |
| SRR2154085 | seedling | wt | 5.78 | HC |
| SRR3098741 | seedling | wt | 27.90 | HC |
| SRR3098742 | seedling | wt | 44.04 | HC |
| SRR3098743 | seedling | wt | 43.44 | HC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 23.93 | HC |
| SRR1944583 | seedling | no_treatment | 22.61 | HC |
| SRR358794 | seedling | wt | 7.37 | HC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 8.73 | HC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 4.87 | HC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 6.98 | HC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 9.72 | HC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 12.41 | HC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 4.44 | HC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 19.80 | HC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 12.41 | HC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 20.39 | HC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 19.87 | HC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 18.52 | HC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 30.51 | HC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 32.49 | HC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 50.08 | HC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 28.03 | HC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 41.17 | HC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 20.58 | HC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 27.07 | HC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 35.86 | HC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 30.75 | HC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 13.63 | HC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 11.09 | HC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 15.26 | HC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 13.94 | HC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 10.58 | HC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 11.80 | HC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 17.46 | HC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 18.95 | HC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 16.07 | HC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 19.13 | HC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 14.17 | HC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 10.10 | HC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 10.30 | HC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 10.56 | HC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 10.60 | HC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 17.82 | HC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 21.17 | HC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 21.40 | HC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 28.55 | HC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 19.03 | HC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 13.19 | HC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 20.71 | HC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 17.89 | HC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 22.10 | HC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 10.70 | HC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 14.83 | HC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 9.91 | HC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 17.00 | HC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 22.02 | HC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 11.51 | HC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 8.68 | HC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 11.05 | HC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 10.23 | HC |
| SRR1617553 | shoot_apical_meristem | no collect | 13.55 | HC |
| SRR1617554 | shoot_apical_meristem | no collect | 10.53 | HC |
| SRR1617556 | shoot_apical_meristem | no collect | 10.24 | HC |
| SRR1617557 | shoot_apical_meristem | no collect | 17.20 | HC |
| SRR1617558 | shoot_apical_meristem | no collect | 17.36 | HC |
| SRR1617559 | shoot_apical_meristem | no collect | 10.26 | HC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 38.09 | HC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 41.09 | HC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 50.19 | HC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 39.62 | HC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 49.40 | HC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 38.68 | HC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 28.48 | HC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 27.79 | HC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 35.08 | HC |