| SRR4457260 | 2nd_leaf | DAH28 | 4.03 | HC |
| SRR4457263 | 2nd_leaf | DAH36 | 5.70 | HC |
| SRR4457265 | 2nd_leaf | DAH44 | 5.92 | HC |
| SRR3745125 | anther | wt | 36.32 | HC |
| SRR3745126 | anther | wt | 27.60 | HC |
| SRR3745127 | anther | wt | 38.19 | HC |
| SRR358795 | callus | wt | 17.12 | HC |
| SRR358796 | callus | wt | 15.91 | HC |
| SRR358797 | callus | wt | 12.57 | HC |
| SRR358798 | callus | wt | 13.37 | HC |
| SRR5560727 | caryopsis | wild_type | 6.04 | HC |
| SRR5560728 | caryopsis | wild_type | 9.79 | HC |
| SRR5560729 | caryopsis | wild_type | 11.51 | HC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 11.62 | HC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 16.37 | HC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 13.44 | HC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 6.81 | HC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 46.13 | HC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 57.95 | HC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 7.47 | HC |
| SRR976168 | flag_leaf | wild_type | 4.25 | HC |
| SRR1213690 | flower | wt(flower buds) | 9.34 | HC |
| SRR1213691 | flower | wt | 9.68 | HC |
| SRR8240824 | leaf | wild_type | 3.03 | HC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 12.83 | HC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 11.59 | HC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 9.26 | HC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 11.05 | HC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 6.45 | HC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 5.55 | HC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 6.66 | HC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 5.62 | HC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 6.73 | HC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 8.22 | HC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 5.26 | HC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 5.26 | HC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 7.29 | HC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 7.77 | HC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 6.12 | HC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 6.31 | HC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 7.41 | HC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 6.06 | HC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 4.43 | HC |
| SRR1761788 | leaf | "wild_type,drought,2" | 10.21 | HC |
| SRR1761789 | leaf | "wild_type,drought,2" | 12.23 | HC |
| SRR1761780 | leaf | "wild_type,drought,1" | 10.21 | HC |
| SRR1761781 | leaf | "wild_type,drought,1" | 12.23 | HC |
| SRR1761528 | leaf | drought | 10.21 | HC |
| SRR1761529 | leaf | drought | 12.23 | HC |
| SRR504365 | leaf | wt | 4.85 | HC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 4.56 | HC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 5.20 | HC |
| SRR6417968 | leaf | H2O_control | 3.83 | HC |
| SRR6417969 | leaf | H2O_control | 4.20 | HC |
| SRR3209770 | leaf | Watered;Long_Day | 5.16 | HC |
| SRR3209771 | leaf | Drought;Long_Day | 4.33 | HC |
| SRR3209772 | leaf | Drought;Long_Day | 4.88 | HC |
| SRR3209773 | leaf | Watered;Short_Day | 3.87 | HC |
| SRR3209775 | leaf | Drought;Short_Day | 4.71 | HC |
| SRR3209776 | leaf | Drought;Short_Day | 5.49 | HC |
| SRR3209777 | leaf | Watered;Long_Day | 7.66 | HC |
| SRR3209778 | leaf | Drought;Long_Day | 6.65 | HC |
| SRR3209779 | leaf | Watered;Short_Day | 5.10 | HC |
| SRR3209780 | leaf | Drought;Short_Day | 5.10 | HC |
| SRR8611900 | leaf | Non-inoculated | 20.92 | HC |
| SRR8611901 | leaf | Non-inoculated | 19.22 | HC |
| SRR8611902 | leaf | Non-inoculated | 20.17 | HC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 13.62 | HC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 15.25 | HC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 14.31 | HC |
| SRR1213692 | leaf | wt | 8.05 | HC |
| SRR1213693 | leaf | wt | 8.98 | HC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 111.68 | HC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 16.51 | HC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 98.94 | HC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 21.75 | HC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 24.38 | HC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 31.83 | HC |
| SRR8582889 | panicle | AM | 2.41 | HC |
| SRR8582890 | panicle | AM | 3.55 | HC |
| SRR8582891 | panicle | PM | 7.09 | HC |
| SRR8582893 | panicle | PM | 7.98 | HC |
| SRR1213696 | endosprem | wt(milk grains) | 4.75 | HC |
| SRR1213697 | endosprem | wt(mature seeds) | 7.57 | HC |
| SRR1633182 | panicle | WT | 14.91 | HC |
| SRR1633185 | panicle | WT | 15.05 | HC |
| SRR5278374 | pistil | "Balilla,S1" | 6.08 | HC |
| SRR5278375 | pistil | "Balilla,S1" | 5.25 | HC |
| SRR5278376 | pistil | "Balilla,S2" | 7.89 | HC |
| SRR5278377 | pistil | "Balilla,S2" | 9.37 | HC |
| SRR5278378 | pistil | "Balilla,S3" | 22.67 | HC |
| SRR5278379 | pistil | "Balilla,S3" | 30.52 | HC |
| SRR5126147 | root | "mock,1_day" | 11.63 | HC |
| SRR5126148 | root | "mock,1_day" | 21.46 | HC |
| SRR5126149 | root | "mock,1_day" | 12.40 | HC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 9.24 | HC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 6.55 | HC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 7.40 | HC |
| SRR5126153 | root | "mock,7_days" | 14.36 | HC |
| SRR5126155 | root | "mock,7_days" | 17.40 | HC |
| SRR5126157 | root | "mock,7_days" | 9.84 | HC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 12.55 | HC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 11.19 | HC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 18.90 | HC |
| SRR5126165 | root | "mock,14_days" | 10.42 | HC |
| SRR5126167 | root | "mock,14_days" | 6.72 | HC |
| SRR5126169 | root | "mock,14_days" | 16.17 | HC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 15.41 | HC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 15.41 | HC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 12.87 | HC |
| SRR3472897 | root | nontransgenic_rice_plant | 6.71 | HC |
| SRR1213694 | root | wt | 5.68 | HC |
| SRR1213695 | root | wt | 8.46 | HC |
| SRR6502091 | root | 100 mM NaCl | 5.78 | HC |
| SRR6502092 | root | 100 mM NaCl | 9.93 | HC |
| SRR6502093 | root | 100 mM NaCl | 6.25 | HC |
| SRR6502094 | root | control | 7.21 | HC |
| SRR6502095 | root | control | 6.89 | HC |
| SRR6502096 | root | control | 6.76 | HC |
| SRR6441554 | seedling | wild_type | 18.04 | HC |
| SRR6441555 | seedling | wild_type | 25.52 | HC |
| SRR2154086 | seedling | wt | 16.84 | HC |
| SRR3098741 | seedling | wt | 6.08 | HC |
| SRR3098742 | seedling | wt | 8.47 | HC |
| SRR3098743 | seedling | wt | 8.18 | HC |
| SRR2857720 | seedling | drought_stress_1h | 5.35 | HC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 6.20 | HC |
| SRR1944583 | seedling | no_treatment | 14.96 | HC |
| SRR358792 | seedling | wt | 8.77 | HC |
| SRR358793 | seedling | wt | 25.88 | HC |
| SRR358794 | seedling | wt | 22.28 | HC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 9.36 | HC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 8.90 | HC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 9.63 | HC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 11.41 | HC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 12.07 | HC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 8.65 | HC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 6.49 | HC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 10.04 | HC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 7.22 | HC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 10.22 | HC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 11.74 | HC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 10.37 | HC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 9.90 | HC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 10.54 | HC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 13.22 | HC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 11.31 | HC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 10.15 | HC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 7.21 | HC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 6.13 | HC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 8.80 | HC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 9.09 | HC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 8.62 | HC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 10.27 | HC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 7.01 | HC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 6.18 | HC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 12.20 | HC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 14.79 | HC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 10.96 | HC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 11.51 | HC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 8.23 | HC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 8.36 | HC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 8.51 | HC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 6.77 | HC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 5.97 | HC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 6.20 | HC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 9.40 | HC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 11.94 | HC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 8.50 | HC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 11.43 | HC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 5.80 | HC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 56.52 | HC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 65.64 | HC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 59.53 | HC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 183.52 | HC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 52.01 | HC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 113.20 | HC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 93.10 | HC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 58.91 | HC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 71.20 | HC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 68.32 | HC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 57.07 | HC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 69.03 | HC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 79.23 | HC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 99.96 | HC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 69.57 | HC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 101.33 | HC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 114.51 | HC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 85.54 | HC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 77.95 | HC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 56.26 | HC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 90.97 | HC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 78.94 | HC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 97.05 | HC |
| SRR1617549 | shoot_apical_meristem | no collect | 25.26 | HC |
| SRR1617550 | shoot_apical_meristem | no collect | 24.47 | HC |
| SRR1617553 | shoot_apical_meristem | no collect | 24.81 | HC |
| SRR1617554 | shoot_apical_meristem | no collect | 22.74 | HC |
| SRR1617556 | shoot_apical_meristem | no collect | 16.05 | HC |
| SRR1617557 | shoot_apical_meristem | no collect | 27.77 | HC |
| SRR1617558 | shoot_apical_meristem | no collect | 31.42 | HC |
| SRR1617559 | shoot_apical_meristem | no collect | 29.14 | HC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 23.93 | HC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 28.02 | HC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 34.13 | HC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 24.53 | HC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 23.99 | HC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 29.17 | HC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 41.02 | HC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 40.80 | HC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 50.13 | HC |