| SRR4457265 | 2nd_leaf | DAH44 | 5.73 | HC |
| SRR3745126 | anther | wt | 5.94 | HC |
| SRR358795 | callus | wt | 14.44 | HC |
| SRR6320473 | carpel | wt | 17.20 | HC |
| SRR6320498 | carpel | wt | 10.07 | HC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 4.68 | HC |
| SRR4947495 | root | control | 32.37 | HC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 4.67 | HC |
| SRR7265400 | coleoptile | 2dA | 7.89 | HC |
| SRR7265401 | coleoptile | 2dA | 10.26 | HC |
| SRR7265402 | coleoptile | 2dA | 7.40 | HC |
| SRR7265404 | coleoptile | 2dN | 4.32 | HC |
| SRR7265405 | coleoptile | 2dN | 3.98 | HC |
| SRR7265406 | coleoptile | 3dA | 5.30 | HC |
| SRR7265407 | coleoptile | 3dA | 3.67 | HC |
| SRR7265408 | coleoptile | 3dA | 3.11 | HC |
| SRR7265411 | coleoptile | 3dN | 3.93 | HC |
| SRR7265418 | coleoptile | 3dN1dA | 5.83 | HC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 4.54 | HC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 6.94 | HC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 11.01 | HC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 11.72 | HC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 9.60 | HC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 13.98 | HC |
| SRR7265379 | embryo | 1hN | 4.02 | HC |
| SRR7265380 | embryo | 1hN | 4.36 | HC |
| SRR7265387 | embryo | 3hN | 3.20 | HC |
| SRR7265388 | embryo | 12hA | 7.17 | HC |
| SRR7265394 | embryo | 24hA | 5.84 | HC |
| SRR7265396 | embryo | 24hA | 6.60 | HC |
| SRR7265397 | embryo | 24hN | 6.47 | HC |
| SRR976168 | flag_leaf | wild_type | 8.76 | HC |
| SRR4457231 | flag_leaf | DAH4 | 4.27 | HC |
| SRR1213690 | flower | wt(flower buds) | 7.41 | HC |
| SRR1213691 | flower | wt | 8.06 | HC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 5.85 | HC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 4.46 | HC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 5.21 | HC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 5.26 | HC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 7.15 | HC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 7.84 | HC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 6.14 | HC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 8.28 | HC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 5.14 | HC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 9.92 | HC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 6.03 | HC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 5.60 | HC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 12.03 | HC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 5.67 | HC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 6.17 | HC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 4.69 | HC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 6.90 | HC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 7.31 | HC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 11.65 | HC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 4.35 | HC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 5.41 | HC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 9.30 | HC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 6.22 | HC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 6.65 | HC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 5.94 | HC |
| SRR1761788 | leaf | "wild_type,drought,2" | 11.62 | HC |
| SRR1761791 | leaf | "wild_type,control,2" | 6.37 | HC |
| SRR1761780 | leaf | "wild_type,drought,1" | 11.62 | HC |
| SRR1761783 | leaf | "wild_type,control,1" | 6.37 | HC |
| SRR1761528 | leaf | drought | 11.62 | HC |
| SRR1761531 | leaf | control | 6.37 | HC |
| SRR504365 | leaf | wt | 5.40 | HC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 4.39 | HC |
| SRR3209771 | leaf | Drought;Long_Day | 4.95 | HC |
| SRR3209776 | leaf | Drought;Short_Day | 5.89 | HC |
| SRR3209778 | leaf | Drought;Long_Day | 6.25 | HC |
| SRR6216698 | leaf | nontransgenic rice plant | 5.12 | HC |
| SRR6216699 | leaf | nontransgenic rice plant | 6.59 | HC |
| SRR1213692 | leaf | wt | 6.47 | HC |
| SRR1213693 | leaf | wt | 14.63 | HC |
| SRR6502086 | leaf | 100 mM NaCl | 7.14 | HC |
| SRR6502097 | leaf | 100 mM NaCl | 9.55 | HC |
| SRR6502099 | leaf | 100 mM NaCl | 13.81 | HC |
| SRR5856929 | leaf | control | 2.99 | HC |
| SRR5856930 | leaf | salt | 5.16 | HC |
| SRR5856931 | leaf | salt | 8.06 | HC |
| SRR5856932 | leaf | salt | 5.85 | HC |
| SRR5856933 | leaf | control | 3.00 | HC |
| SRR5856935 | leaf | control | 3.28 | HC |
| SRR5856936 | leaf | salt | 5.34 | HC |
| SRR5856937 | leaf | salt | 6.63 | HC |
| SRR5856938 | leaf | salt | 4.82 | HC |
| SRR6053392 | leaf | ethanol solvent (untreated control) | 13.23 | HC |
| SRR6053396 | leaf | gibberellic acid (GA) | 13.27 | HC |
| SRR6053397 | leaf | gibberellic acid (GA) | 14.57 | HC |
| SRR6168974 | leaf | none (control) | 6.16 | HC |
| SRR6168975 | leaf | none (control) | 8.80 | HC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 10.07 | HC |
| SRR6168979 | leaf | none (control) | 3.53 | HC |
| SRR6168980 | leaf | none (control) | 7.70 | HC |
| SRR6168981 | leaf | none (control) | 8.23 | HC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 4.51 | HC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 3.56 | HC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 4.26 | HC |
| SRR5110429 | panicle | Dawn | 7.78 | HC |
| SRR5110431 | panicle | Dawn | 9.18 | HC |
| SRR4947496 | root | control | 17.84 | HC |
| SRR5110433 | panicle | Dawn + 3.5h | 7.59 | HC |
| SRR5110435 | panicle | Dawn + 3.5h | 3.31 | HC |
| SRR5110437 | panicle | Dawn + 7h | 21.33 | HC |
| SRR5110438 | panicle | Dawn + 7h | 15.20 | HC |
| SRR5110440 | panicle | Dawn + 7h | 9.67 | HC |
| SRR5110441 | panicle | Dawn + 10.5h | 10.34 | HC |
| SRR5110442 | panicle | Dawn + 10.5h | 12.53 | HC |
| SRR5110443 | panicle | Dawn + 10.5h | 14.86 | HC |
| SRR5110444 | panicle | Dawn + 10.5h | 19.37 | HC |
| SRR5110445 | panicle | Dusk | 6.29 | HC |
| SRR5110446 | panicle | Dusk | 9.76 | HC |
| SRR5110447 | panicle | Dusk | 14.93 | HC |
| SRR5110448 | panicle | Dusk | 17.77 | HC |
| SRR5110450 | panicle | Dawn + 14h | 6.89 | HC |
| SRR5110451 | panicle | Dawn + 14h | 9.57 | HC |
| SRR5110452 | panicle | Dawn + 14h | 11.21 | HC |
| SRR5110453 | panicle | Dawn + 17.5h | 5.59 | HC |
| SRR5110454 | panicle | Dawn + 17.5h | 7.50 | HC |
| SRR5110457 | panicle | Dawn + 21h | 6.03 | HC |
| SRR1213696 | endosprem | wt(milk grains) | 3.16 | HC |
| SRR1633185 | panicle | WT | 7.69 | HC |
| SRR5278374 | pistil | "Balilla,S1" | 9.38 | HC |
| SRR5278375 | pistil | "Balilla,S1" | 5.08 | HC |
| SRR5278378 | pistil | "Balilla,S3" | 8.71 | HC |
| SRR5126147 | root | "mock,1_day" | 5.44 | HC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 4.92 | HC |
| SRR5126153 | root | "mock,7_days" | 5.16 | HC |
| SRR3472897 | root | nontransgenic_rice_plant | 2.76 | HC |
| SRR1213694 | root | wt | 5.32 | HC |
| SRR1213695 | root | wt | 18.99 | HC |
| SRR4947478 | root | control | 24.41 | HC |
| SRR4947479 | root | control | 28.55 | HC |
| SRR4947480 | root | control | 9.19 | HC |
| SRR4947481 | root | control | 23.72 | HC |
| SRR4947482 | root | Al | 41.17 | HC |
| SRR4947483 | root | Al | 21.74 | HC |
| SRR4947484 | root | Al | 22.37 | HC |
| SRR4947485 | root | Al | 12.72 | HC |
| SRR4947487 | root | control | 13.53 | HC |
| SRR4947488 | root | control | 15.22 | HC |
| SRR4947489 | root | control | 10.72 | HC |
| SRR4947490 | root | Al | 26.79 | HC |
| SRR4947491 | root | Al | 21.50 | HC |
| SRR4947492 | root | Al | 8.15 | HC |
| SRR4947493 | root | Al | 13.42 | HC |
| SRR4947494 | root | control | 26.46 | HC |
| SRR4947497 | root | control | 31.97 | HC |
| SRR4947498 | root | Al | 30.41 | HC |
| SRR4947499 | root | Al | 32.84 | HC |
| SRR4947500 | root | Al | 16.97 | HC |
| SRR4947501 | root | Al | 30.36 | HC |
| SRR4947502 | root | control | 38.16 | HC |
| SRR4947503 | root | control | 32.07 | HC |
| SRR4947504 | root | control | 11.81 | HC |
| SRR4947505 | root | control | 15.78 | HC |
| SRR4947506 | root | Al | 14.48 | HC |
| SRR4947507 | root | Al | 42.44 | HC |
| SRR4947508 | root | Al | 15.32 | HC |
| SRR4947509 | root | Al | 27.65 | HC |
| SRR6502091 | root | 100 mM NaCl | 8.14 | HC |
| SRR6502092 | root | 100 mM NaCl | 5.38 | HC |
| SRR6502103 | root | 100 mM NaCl | 8.33 | HC |
| SRR6502104 | root | 100 mM NaCl | 8.14 | HC |
| SRR6502107 | root | control | 6.12 | HC |
| SRR6502108 | root | control | 5.10 | HC |
| SRR1740435 | root_differentiation_zone | wt | 4.75 | HC |
| SRR1740429 | root_meristematic_zone | wt | 4.59 | HC |
| SRR1740430 | root_meristematic_zone | wt | 4.25 | HC |
| SRR2154086 | seedling | wt | 8.99 | HC |
| SRR2154082 | seedling | wt | 12.04 | HC |
| SRR2154083 | seedling | wt | 4.15 | HC |
| SRR2154084 | seedling | wt | 12.80 | HC |
| SRR2154085 | seedling | wt | 12.67 | HC |
| SRR2154087 | seedling | wt | 13.26 | HC |
| SRR2857721 | seedling | drought_stress_6h | 4.75 | HC |
| SRR1944583 | seedling | no_treatment | 5.84 | HC |
| SRR358792 | seedling | wt | 14.89 | HC |
| SRR358793 | seedling | wt | 19.33 | HC |
| SRR358794 | seedling | wt | 18.01 | HC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 3.93 | HC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 5.25 | HC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 7.69 | HC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 4.98 | HC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 6.49 | HC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 6.52 | HC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 7.46 | HC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 5.25 | HC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 6.27 | HC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 7.16 | HC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 8.82 | HC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 5.38 | HC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 7.28 | HC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 7.07 | HC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 8.34 | HC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 5.10 | HC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 9.64 | HC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 6.06 | HC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 4.94 | HC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 5.46 | HC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 7.43 | HC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 8.02 | HC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 6.16 | HC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 3.24 | HC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 3.02 | HC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 6.56 | HC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 5.74 | HC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 5.18 | HC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 10.19 | HC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 12.26 | HC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 10.54 | HC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 13.74 | HC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 12.41 | HC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 18.40 | HC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 15.43 | HC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 11.32 | HC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 17.34 | HC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 19.24 | HC |
| SRR1617553 | shoot_apical_meristem | no collect | 13.77 | HC |
| SRR1617556 | shoot_apical_meristem | no collect | 10.77 | HC |
| SRR1617557 | shoot_apical_meristem | no collect | 9.25 | HC |
| SRR1617559 | shoot_apical_meristem | no collect | 7.87 | HC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 7.12 | HC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 6.01 | HC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 9.21 | HC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 12.47 | HC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 7.52 | HC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 6.13 | HC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 9.05 | HC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 8.99 | HC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 9.81 | HC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 10.52 | HC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 12.68 | HC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 6.39 | HC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 3.08 | HC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 7.25 | HC |