| SRR358795 | callus | wt | 50.10 | HC |
| SRR358796 | callus | wt | 63.00 | HC |
| SRR358797 | callus | wt | 37.67 | HC |
| SRR358798 | callus | wt | 34.06 | HC |
| SRR5560727 | caryopsis | wild_type | 73.53 | HC |
| SRR5560728 | caryopsis | wild_type | 77.74 | HC |
| SRR5560729 | caryopsis | wild_type | 53.56 | HC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 67.07 | HC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 67.79 | HC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 48.01 | HC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 71.29 | HC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 66.67 | HC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 84.05 | HC |
| SRR2338866 | endosprem | control | 5.57 | HC |
| SRR2338867 | endosprem | control | 2.79 | HC |
| SRR2338868 | endosprem | high_temperature | 5.74 | HC |
| SRR2338869 | endosprem | high_temperature | 8.36 | HC |
| SRR976168 | flag_leaf | wild_type | 4.58 | HC |
| SRR1213690 | flower | wt(flower buds) | 29.61 | HC |
| SRR1213691 | flower | wt | 28.65 | HC |
| SRR8240818 | leaf | wild_type | 7.95 | HC |
| SRR8240819 | leaf | wild_type | 4.93 | HC |
| SRR8240820 | leaf | wild_type | 5.58 | HC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 82.29 | HC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 66.27 | HC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 48.20 | HC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 57.33 | HC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 9.26 | HC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 8.92 | HC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 9.13 | HC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 7.67 | HC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 9.90 | HC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 12.03 | HC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 13.04 | HC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 11.99 | HC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 8.19 | HC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 8.54 | HC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 12.94 | HC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 11.87 | HC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 8.29 | HC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 17.49 | HC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 23.39 | HC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 30.76 | HC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 10.93 | HC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 10.93 | HC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 9.91 | HC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 6.30 | HC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 5.99 | HC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 9.08 | HC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 7.37 | HC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 6.74 | HC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 5.87 | HC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 8.59 | HC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 4.64 | HC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 8.15 | HC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 6.82 | HC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 7.57 | HC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 9.92 | HC |
| SRR1761788 | leaf | "wild_type,drought,2" | 21.88 | HC |
| SRR1761789 | leaf | "wild_type,drought,2" | 19.82 | HC |
| SRR1761790 | leaf | "wild_type,control,2" | 10.01 | HC |
| SRR1761791 | leaf | "wild_type,control,2" | 6.76 | HC |
| SRR1761780 | leaf | "wild_type,drought,1" | 21.88 | HC |
| SRR1761781 | leaf | "wild_type,drought,1" | 19.82 | HC |
| SRR1761782 | leaf | "wild_type,control,1" | 10.01 | HC |
| SRR1761783 | leaf | "wild_type,control,1" | 6.76 | HC |
| SRR1761528 | leaf | drought | 21.88 | HC |
| SRR1761529 | leaf | drought | 19.82 | HC |
| SRR1761530 | leaf | control | 10.01 | HC |
| SRR1761531 | leaf | control | 6.76 | HC |
| SRR504365 | leaf | wt | 10.73 | HC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 10.53 | HC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 8.83 | HC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 7.56 | HC |
| SRR6417967 | leaf | H2O_control | 4.17 | HC |
| SRR6417968 | leaf | H2O_control | 7.26 | HC |
| SRR6417969 | leaf | H2O_control | 10.46 | HC |
| SRR3209769 | leaf | Watered;Long_Day | 6.39 | HC |
| SRR3209770 | leaf | Watered;Long_Day | 7.22 | HC |
| SRR3209771 | leaf | Drought;Long_Day | 23.51 | HC |
| SRR3209772 | leaf | Drought;Long_Day | 28.84 | HC |
| SRR3209773 | leaf | Watered;Short_Day | 5.15 | HC |
| SRR3209774 | leaf | Watered;Short_Day | 4.49 | HC |
| SRR3209775 | leaf | Drought;Short_Day | 15.08 | HC |
| SRR3209776 | leaf | Drought;Short_Day | 16.83 | HC |
| SRR3209777 | leaf | Watered;Long_Day | 11.17 | HC |
| SRR3209778 | leaf | Drought;Long_Day | 21.18 | HC |
| SRR3209779 | leaf | Watered;Short_Day | 5.32 | HC |
| SRR3209780 | leaf | Drought;Short_Day | 24.41 | HC |
| SRR8611900 | leaf | Non-inoculated | 31.25 | HC |
| SRR8611901 | leaf | Non-inoculated | 30.90 | HC |
| SRR8611902 | leaf | Non-inoculated | 29.85 | HC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 42.56 | HC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 44.08 | HC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 42.26 | HC |
| SRR6216698 | leaf | nontransgenic rice plant | 40.05 | HC |
| SRR6216699 | leaf | nontransgenic rice plant | 48.34 | HC |
| SRR1213692 | leaf | wt | 16.27 | HC |
| SRR1213693 | leaf | wt | 11.40 | HC |
| SRR6168973 | leaf | none (control) | 119.74 | HC |
| SRR6168974 | leaf | none (control) | 107.81 | HC |
| SRR6168975 | leaf | none (control) | 121.05 | HC |
| SRR6168979 | leaf | none (control) | 16.96 | HC |
| SRR6168980 | leaf | none (control) | 37.43 | HC |
| SRR6168981 | leaf | none (control) | 60.10 | HC |
| SRR8582888 | panicle | AM | 9.12 | HC |
| SRR8582889 | panicle | AM | 9.94 | HC |
| SRR8582890 | panicle | AM | 8.15 | HC |
| SRR8582891 | panicle | PM | 53.87 | HC |
| SRR8582892 | panicle | PM | 38.49 | HC |
| SRR8582893 | panicle | PM | 58.28 | HC |
| SRR1213696 | endosprem | wt(milk grains) | 6.48 | HC |
| SRR1213697 | endosprem | wt(mature seeds) | 5.28 | HC |
| SRR5126147 | root | "mock,1_day" | 32.30 | HC |
| SRR5126148 | root | "mock,1_day" | 48.79 | HC |
| SRR5126149 | root | "mock,1_day" | 25.25 | HC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 20.23 | HC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 20.80 | HC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 34.01 | HC |
| SRR5126153 | root | "mock,7_days" | 20.40 | HC |
| SRR5126155 | root | "mock,7_days" | 29.03 | HC |
| SRR5126157 | root | "mock,7_days" | 23.66 | HC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 45.16 | HC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 43.73 | HC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 51.55 | HC |
| SRR5126165 | root | "mock,14_days" | 13.21 | HC |
| SRR5126167 | root | "mock,14_days" | 16.28 | HC |
| SRR5126169 | root | "mock,14_days" | 29.83 | HC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 50.67 | HC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 29.95 | HC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 64.33 | HC |
| SRR3472897 | root | nontransgenic_rice_plant | 19.24 | HC |
| SRR1213694 | root | wt | 5.98 | HC |
| SRR1213695 | root | wt | 8.78 | HC |
| SRR1740434 | root_differentiation_zone | wt | 18.32 | HC |
| SRR1740435 | root_differentiation_zone | wt | 26.17 | HC |
| SRR1740436 | root_differentiation_zone | wt | 22.34 | HC |
| SRR1740431 | root_elongation_zone | wt | 48.46 | HC |
| SRR1740432 | root_elongation_zone | wt | 39.98 | HC |
| SRR1740433 | root_elongation_zone | wt | 50.36 | HC |
| SRR1740428 | root_meristematic_zone | wt | 48.86 | HC |
| SRR1740429 | root_meristematic_zone | wt | 37.01 | HC |
| SRR1740430 | root_meristematic_zone | wt | 39.25 | HC |
| SRR6441554 | seedling | wild_type | 42.16 | HC |
| SRR6441555 | seedling | wild_type | 43.22 | HC |
| SRR2154086 | seedling | wt | 28.58 | HC |
| SRR3098741 | seedling | wt | 15.38 | HC |
| SRR3098742 | seedling | wt | 24.08 | HC |
| SRR3098743 | seedling | wt | 10.81 | HC |
| SRR2857719 | seedling | drought_stress_0h | 14.54 | HC |
| SRR2857720 | seedling | drought_stress_1h | 8.37 | HC |
| SRR2857721 | seedling | drought_stress_6h | 10.37 | HC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 26.76 | HC |
| SRR1944583 | seedling | no_treatment | 22.69 | HC |
| SRR358793 | seedling | wt | 16.06 | HC |
| SRR358794 | seedling | wt | 11.54 | HC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 18.43 | HC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 18.96 | HC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 10.64 | HC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 13.63 | HC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 17.98 | HC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 16.74 | HC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 12.43 | HC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 10.99 | HC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 23.31 | HC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 17.85 | HC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 18.35 | HC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 12.07 | HC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 19.00 | HC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 19.26 | HC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 15.18 | HC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 18.50 | HC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 28.90 | HC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 26.68 | HC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 20.90 | HC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 22.38 | HC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 26.71 | HC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 29.17 | HC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 21.93 | HC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 26.03 | HC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 18.32 | HC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 22.04 | HC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 20.01 | HC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 23.48 | HC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 31.96 | HC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 35.65 | HC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 36.15 | HC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 38.87 | HC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 20.59 | HC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 20.02 | HC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 22.44 | HC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 24.26 | HC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 11.06 | HC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 9.23 | HC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 28.33 | HC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 23.28 | HC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 42.88 | HC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 45.66 | HC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 118.57 | HC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 121.25 | HC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 102.04 | HC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 169.64 | HC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 116.72 | HC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 108.25 | HC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 120.34 | HC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 112.54 | HC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 108.24 | HC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 139.77 | HC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 109.73 | HC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 111.06 | HC |
| SRR1617549 | shoot_apical_meristem | no collect | 16.93 | HC |
| SRR1617550 | shoot_apical_meristem | no collect | 14.44 | HC |
| SRR1617553 | shoot_apical_meristem | no collect | 56.83 | HC |
| SRR1617554 | shoot_apical_meristem | no collect | 42.09 | HC |
| SRR1617556 | shoot_apical_meristem | no collect | 40.43 | HC |
| SRR1617557 | shoot_apical_meristem | no collect | 73.85 | HC |
| SRR1617558 | shoot_apical_meristem | no collect | 54.92 | HC |
| SRR1617559 | shoot_apical_meristem | no collect | 51.06 | HC |