| SRR5560727 | caryopsis | wild_type | 8.08 | HC |
| SRR5560728 | caryopsis | wild_type | 7.97 | HC |
| SRR5560729 | caryopsis | wild_type | 6.95 | HC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 9.68 | HC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 14.61 | HC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 4.53 | HC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 9.60 | HC |
| SRR976168 | flag_leaf | wild_type | 3.52 | HC |
| SRR1213690 | flower | wt(flower buds) | 12.73 | HC |
| SRR1213691 | flower | wt | 14.16 | HC |
| SRR8240824 | leaf | wild_type | 11.07 | HC |
| SRR8240825 | leaf | wild_type | 11.20 | HC |
| SRR8240826 | leaf | wild_type | 9.08 | HC |
| SRR8240818 | leaf | wild_type | 2.82 | HC |
| SRR8240819 | leaf | wild_type | 4.68 | HC |
| SRR8240820 | leaf | wild_type | 3.70 | HC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 16.69 | HC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 16.36 | HC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 10.59 | HC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 14.60 | HC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 9.37 | HC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 9.65 | HC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 9.37 | HC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 5.82 | HC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 6.41 | HC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 10.15 | HC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 11.34 | HC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 10.60 | HC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 8.71 | HC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 8.55 | HC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 11.54 | HC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 6.74 | HC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 7.47 | HC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 6.10 | HC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 8.93 | HC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 10.16 | HC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 11.48 | HC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 7.29 | HC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 9.67 | HC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 8.69 | HC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 7.00 | HC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 13.29 | HC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 9.87 | HC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 6.61 | HC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 10.22 | HC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 7.46 | HC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 10.89 | HC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 5.54 | HC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 8.84 | HC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 7.88 | HC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 7.88 | HC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 12.97 | HC |
| SRR1761788 | leaf | "wild_type,drought,2" | 14.83 | HC |
| SRR1761789 | leaf | "wild_type,drought,2" | 14.05 | HC |
| SRR1761790 | leaf | "wild_type,control,2" | 12.21 | HC |
| SRR1761791 | leaf | "wild_type,control,2" | 9.77 | HC |
| SRR1761780 | leaf | "wild_type,drought,1" | 14.83 | HC |
| SRR1761781 | leaf | "wild_type,drought,1" | 14.05 | HC |
| SRR1761782 | leaf | "wild_type,control,1" | 12.21 | HC |
| SRR1761783 | leaf | "wild_type,control,1" | 9.77 | HC |
| SRR1761528 | leaf | drought | 14.83 | HC |
| SRR1761529 | leaf | drought | 14.05 | HC |
| SRR1761530 | leaf | control | 12.21 | HC |
| SRR1761531 | leaf | control | 9.77 | HC |
| SRR504365 | leaf | wt | 15.83 | HC |
| SRR6417969 | leaf | H2O_control | 4.34 | HC |
| SRR3209771 | leaf | Drought;Long_Day | 8.26 | HC |
| SRR3209772 | leaf | Drought;Long_Day | 8.39 | HC |
| SRR3209775 | leaf | Drought;Short_Day | 10.50 | HC |
| SRR3209776 | leaf | Drought;Short_Day | 9.16 | HC |
| SRR3209777 | leaf | Watered;Long_Day | 3.70 | HC |
| SRR3209778 | leaf | Drought;Long_Day | 6.93 | HC |
| SRR3209780 | leaf | Drought;Short_Day | 14.25 | HC |
| SRR8611900 | leaf | Non-inoculated | 26.82 | HC |
| SRR8611901 | leaf | Non-inoculated | 25.86 | HC |
| SRR8611902 | leaf | Non-inoculated | 22.55 | HC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 30.92 | HC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 30.71 | HC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 26.98 | HC |
| SRR6216698 | leaf | nontransgenic rice plant | 13.33 | HC |
| SRR6216699 | leaf | nontransgenic rice plant | 14.65 | HC |
| SRR1213692 | leaf | wt | 30.30 | HC |
| SRR1213693 | leaf | wt | 24.90 | HC |
| SRR6502085 | leaf | 100 mM NaCl | 5.42 | HC |
| SRR6502086 | leaf | 100 mM NaCl | 6.09 | HC |
| SRR6502087 | leaf | 100 mM NaCl | 7.32 | HC |
| SRR6502088 | leaf | control | 5.14 | HC |
| SRR6502089 | leaf | control | 6.38 | HC |
| SRR6502090 | leaf | control | 6.92 | HC |
| SRR6502098 | leaf | 100 mM NaCl | 6.52 | HC |
| SRR6502099 | leaf | 100 mM NaCl | 15.34 | HC |
| SRR6502100 | leaf | control | 10.30 | HC |
| SRR6502101 | leaf | control | 7.83 | HC |
| SRR6502102 | leaf | control | 8.72 | HC |
| SRR6168973 | leaf | none (control) | 22.09 | HC |
| SRR6168974 | leaf | none (control) | 20.75 | HC |
| SRR6168975 | leaf | none (control) | 22.19 | HC |
| SRR6168980 | leaf | none (control) | 3.16 | HC |
| SRR6168981 | leaf | none (control) | 6.91 | HC |
| SRR8582888 | panicle | AM | 4.10 | HC |
| SRR8582889 | panicle | AM | 5.58 | HC |
| SRR8582890 | panicle | AM | 4.93 | HC |
| SRR8582891 | panicle | PM | 31.41 | HC |
| SRR8582892 | panicle | PM | 23.25 | HC |
| SRR8582893 | panicle | PM | 49.81 | HC |
| SRR4947496 | root | control | 25.94 | HC |
| SRR1213696 | endosprem | wt(milk grains) | 2.54 | HC |
| SRR1633182 | panicle | WT | 11.91 | HC |
| SRR1633185 | panicle | WT | 14.96 | HC |
| SRR5278374 | pistil | "Balilla,S1" | 10.47 | HC |
| SRR5278375 | pistil | "Balilla,S1" | 9.25 | HC |
| SRR5278376 | pistil | "Balilla,S2" | 11.58 | HC |
| SRR5278377 | pistil | "Balilla,S2" | 9.61 | HC |
| SRR5278378 | pistil | "Balilla,S3" | 13.79 | HC |
| SRR5278379 | pistil | "Balilla,S3" | 25.83 | HC |
| SRR5126157 | root | "mock,7_days" | 6.06 | HC |
| SRR5126169 | root | "mock,14_days" | 6.95 | HC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 6.78 | HC |
| SRR3472897 | root | nontransgenic_rice_plant | 3.88 | HC |
| SRR1213695 | root | wt | 24.25 | HC |
| SRR4947480 | root | control | 26.29 | HC |
| SRR4947481 | root | control | 29.13 | HC |
| SRR4947484 | root | Al | 20.02 | HC |
| SRR4947485 | root | Al | 26.97 | HC |
| SRR4947488 | root | control | 20.65 | HC |
| SRR4947489 | root | control | 29.84 | HC |
| SRR4947492 | root | Al | 21.02 | HC |
| SRR4947493 | root | Al | 24.05 | HC |
| SRR4947497 | root | control | 14.62 | HC |
| SRR4947500 | root | Al | 11.56 | HC |
| SRR4947501 | root | Al | 8.38 | HC |
| SRR4947504 | root | control | 21.33 | HC |
| SRR4947505 | root | control | 16.15 | HC |
| SRR4947508 | root | Al | 18.94 | HC |
| SRR4947509 | root | Al | 26.15 | HC |
| SRR6441554 | seedling | wild_type | 20.81 | HC |
| SRR6441555 | seedling | wild_type | 26.76 | HC |
| SRR2154086 | seedling | wt | 29.20 | HC |
| SRR2154085 | seedling | wt | 16.88 | HC |
| SRR2154087 | seedling | wt | 18.60 | HC |
| SRR2857721 | seedling | drought_stress_6h | 8.11 | HC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 10.79 | HC |
| SRR1944583 | seedling | no_treatment | 26.50 | HC |
| SRR358791 | seedling | wt | 33.21 | HC |
| SRR358792 | seedling | wt | 41.86 | HC |
| SRR358793 | seedling | wt | 39.60 | HC |
| SRR358794 | seedling | wt | 40.95 | HC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 36.36 | HC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 43.99 | HC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 33.59 | HC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 36.58 | HC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 35.38 | HC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 32.38 | HC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 11.07 | HC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 23.18 | HC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 36.25 | HC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 36.91 | HC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 17.62 | HC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 23.98 | HC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 21.59 | HC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 15.15 | HC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 35.22 | HC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 46.44 | HC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 65.23 | HC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 91.67 | HC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 77.99 | HC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 41.75 | HC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 64.69 | HC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 77.70 | HC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 19.95 | HC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 20.31 | HC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 21.30 | HC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 22.81 | HC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 27.71 | HC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 28.08 | HC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 31.81 | HC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 31.47 | HC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 8.38 | HC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 6.48 | HC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 18.46 | HC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 17.13 | HC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 20.03 | HC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 15.86 | HC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 17.05 | HC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 12.03 | HC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 21.73 | HC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 23.55 | HC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 14.44 | HC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 10.19 | HC |
| SRR1617558 | shoot_apical_meristem | no collect | 7.99 | HC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 24.26 | HC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 29.27 | HC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 33.75 | HC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 34.41 | HC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 28.26 | HC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 27.55 | HC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 19.02 | HC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 15.53 | HC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 16.30 | HC |