| SRR5560727 | caryopsis | wild_type | 5.72 | HC |
| SRR5560729 | caryopsis | wild_type | 6.01 | HC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 4.36 | HC |
| SRR7265403 | coleoptile | 2dN | 5.46 | HC |
| SRR7265404 | coleoptile | 2dN | 5.76 | HC |
| SRR7265405 | coleoptile | 2dN | 5.00 | HC |
| SRR7265410 | coleoptile | 3dN | 5.09 | HC |
| SRR7265416 | coleoptile | 4dN | 4.43 | HC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 15.63 | HC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 17.47 | HC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 25.01 | HC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 16.22 | HC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 18.45 | HC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 6.67 | HC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 3.91 | HC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 14.87 | HC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 33.60 | HC |
| SRR7265390 | embryo | 12hA | 5.35 | HC |
| SRR7265391 | embryo | 12hN | 5.73 | HC |
| SRR7265396 | embryo | 24hA | 5.76 | HC |
| SRR7265397 | embryo | 24hN | 5.50 | HC |
| SRR7265398 | embryo | 24hN | 5.79 | HC |
| SRR7265399 | embryo | 24hN | 6.59 | HC |
| SRR2338866 | endosprem | control | 4.95 | HC |
| SRR2338868 | endosprem | high_temperature | 3.82 | HC |
| SRR1213690 | flower | wt(flower buds) | 4.08 | HC |
| SRR8060835 | leaf | wild_type | 6.62 | HC |
| SRR8060836 | leaf | wild_type | 4.57 | HC |
| SRR8060837 | leaf | wild_type | 6.81 | HC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 8.58 | HC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 4.66 | HC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 4.60 | HC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 5.92 | HC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 7.30 | HC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 4.93 | HC |
| SRR504365 | leaf | wt | 6.77 | HC |
| SRR8611900 | leaf | Non-inoculated | 4.14 | HC |
| SRR8611901 | leaf | Non-inoculated | 3.92 | HC |
| SRR8611902 | leaf | Non-inoculated | 5.05 | HC |
| SRR6216698 | leaf | nontransgenic rice plant | 6.75 | HC |
| SRR6216699 | leaf | nontransgenic rice plant | 5.01 | HC |
| SRR6502087 | leaf | 100 mM NaCl | 5.87 | HC |
| SRR6502097 | leaf | 100 mM NaCl | 5.53 | HC |
| SRR6502102 | leaf | control | 6.63 | HC |
| SRR5856927 | leaf | control | 3.72 | HC |
| SRR5856928 | leaf | control | 4.75 | HC |
| SRR5856929 | leaf | control | 5.33 | HC |
| SRR5856930 | leaf | salt | 4.07 | HC |
| SRR5856931 | leaf | salt | 2.64 | HC |
| SRR5856932 | leaf | salt | 2.89 | HC |
| SRR5856933 | leaf | control | 8.36 | HC |
| SRR5856934 | leaf | control | 6.41 | HC |
| SRR5856935 | leaf | control | 8.20 | HC |
| SRR5856936 | leaf | salt | 3.77 | HC |
| SRR5856937 | leaf | salt | 3.44 | HC |
| SRR5856938 | leaf | salt | 5.56 | HC |
| SRR6168973 | leaf | none (control) | 40.10 | HC |
| SRR6168974 | leaf | none (control) | 31.75 | HC |
| SRR6168975 | leaf | none (control) | 21.00 | HC |
| SRR6168981 | leaf | none (control) | 5.88 | HC |
| SRR1213697 | endosprem | wt(mature seeds) | 3.85 | HC |
| SRR5126147 | root | "mock,1_day" | 5.08 | HC |
| SRR5126148 | root | "mock,1_day" | 4.33 | HC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 6.86 | HC |
| SRR5126153 | root | "mock,7_days" | 9.21 | HC |
| SRR5126155 | root | "mock,7_days" | 5.38 | HC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 5.42 | HC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 9.10 | HC |
| SRR3472897 | root | nontransgenic_rice_plant | 6.79 | HC |
| SRR4947492 | root | Al | 6.07 | HC |
| SRR4947493 | root | Al | 5.28 | HC |
| SRR4947497 | root | control | 6.68 | HC |
| SRR4947500 | root | Al | 5.87 | HC |
| SRR4947501 | root | Al | 7.88 | HC |
| SRR6502091 | root | 100 mM NaCl | 12.25 | HC |
| SRR6502092 | root | 100 mM NaCl | 8.89 | HC |
| SRR6502093 | root | 100 mM NaCl | 9.45 | HC |
| SRR6502095 | root | control | 10.61 | HC |
| SRR6502096 | root | control | 14.57 | HC |
| SRR6502103 | root | 100 mM NaCl | 13.23 | HC |
| SRR6502104 | root | 100 mM NaCl | 13.16 | HC |
| SRR6502105 | root | 100 mM NaCl | 19.31 | HC |
| SRR6502106 | root | control | 10.86 | HC |
| SRR6502107 | root | control | 9.80 | HC |
| SRR1740434 | root_differentiation_zone | wt | 5.49 | HC |
| SRR1740435 | root_differentiation_zone | wt | 5.14 | HC |
| SRR1740436 | root_differentiation_zone | wt | 4.62 | HC |
| SRR1740431 | root_elongation_zone | wt | 12.99 | HC |
| SRR1740432 | root_elongation_zone | wt | 8.29 | HC |
| SRR1740433 | root_elongation_zone | wt | 13.49 | HC |
| SRR1740428 | root_meristematic_zone | wt | 8.49 | HC |
| SRR1740429 | root_meristematic_zone | wt | 8.65 | HC |
| SRR1740430 | root_meristematic_zone | wt | 9.82 | HC |
| SRR2857719 | seedling | drought_stress_0h | 4.68 | HC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 8.81 | HC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 5.68 | HC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 7.08 | HC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 11.05 | HC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 9.51 | HC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 4.42 | HC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 7.09 | HC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 6.93 | HC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 7.02 | HC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 5.74 | HC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 6.69 | HC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 4.58 | HC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 5.23 | HC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 5.33 | HC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 6.73 | HC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 22.26 | HC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 21.55 | HC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 19.25 | HC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 27.25 | HC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 26.65 | HC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 23.83 | HC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 15.75 | HC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 25.90 | HC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 17.86 | HC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 22.69 | HC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 26.63 | HC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 17.08 | HC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 13.61 | HC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 16.43 | HC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 17.61 | HC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 12.28 | HC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 16.74 | HC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 14.47 | HC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 14.82 | HC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 15.91 | HC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 19.41 | HC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 22.51 | HC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 18.32 | HC |
| SRR1617553 | shoot_apical_meristem | no collect | 15.71 | HC |
| SRR1617556 | shoot_apical_meristem | no collect | 15.45 | HC |
| SRR1617557 | shoot_apical_meristem | no collect | 28.52 | HC |
| SRR1617558 | shoot_apical_meristem | no collect | 11.54 | HC |
| SRR1617559 | shoot_apical_meristem | no collect | 11.11 | HC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 12.80 | HC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 10.50 | HC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 15.12 | HC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 18.08 | HC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 20.22 | HC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 14.87 | HC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 12.71 | HC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 13.56 | HC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 11.26 | HC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 8.02 | HC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 6.91 | HC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 9.41 | HC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 9.25 | HC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 7.64 | HC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 7.82 | HC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 6.21 | HC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 8.31 | HC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 6.95 | HC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 6.16 | HC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 6.60 | HC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 8.84 | HC |