| SRR3745125 | anther | wt | 20.93 | HC |
| SRR3745126 | anther | wt | 19.60 | HC |
| SRR358795 | callus | wt | 98.03 | HC |
| SRR358796 | callus | wt | 82.94 | HC |
| SRR358797 | callus | wt | 94.87 | HC |
| SRR358798 | callus | wt | 92.58 | HC |
| SRR6320473 | carpel | wt | 28.63 | HC |
| SRR6320498 | carpel | wt | 26.48 | HC |
| SRR5560727 | caryopsis | wild_type | 5.51 | HC |
| SRR5560729 | caryopsis | wild_type | 17.27 | HC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 5.99 | HC |
| SRR4947495 | root | control | 13.33 | HC |
| SRR7265400 | coleoptile | 2dA | 24.23 | HC |
| SRR7265401 | coleoptile | 2dA | 19.69 | HC |
| SRR7265402 | coleoptile | 2dA | 27.17 | HC |
| SRR7265403 | coleoptile | 2dN | 20.01 | HC |
| SRR7265404 | coleoptile | 2dN | 19.56 | HC |
| SRR7265405 | coleoptile | 2dN | 24.97 | HC |
| SRR7265406 | coleoptile | 3dA | 3.98 | HC |
| SRR7265407 | coleoptile | 3dA | 5.12 | HC |
| SRR7265408 | coleoptile | 3dA | 4.84 | HC |
| SRR7265409 | coleoptile | 3dN | 8.67 | HC |
| SRR7265410 | coleoptile | 3dN | 6.54 | HC |
| SRR7265411 | coleoptile | 3dN | 7.36 | HC |
| SRR7265413 | coleoptile | 4dA | 7.85 | HC |
| SRR7265414 | coleoptile | 4dA | 5.47 | HC |
| SRR7265415 | coleoptile | 4dN | 7.80 | HC |
| SRR7265416 | coleoptile | 4dN | 7.21 | HC |
| SRR7265417 | coleoptile | 4dN | 6.29 | HC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 22.29 | HC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 8.15 | HC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 9.91 | HC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 14.83 | HC |
| SRR7265373 | embryo | dry seed 0 h | 24.12 | HC |
| SRR7265374 | embryo | dry seed 0 h | 24.58 | HC |
| SRR7265375 | embryo | dry seed 0 h | 2.32 | HC |
| SRR7265376 | embryo | 1hA | 22.31 | HC |
| SRR7265377 | embryo | 1hA | 28.79 | HC |
| SRR7265378 | embryo | 1hA | 24.79 | HC |
| SRR7265379 | embryo | 1hN | 27.38 | HC |
| SRR7265380 | embryo | 1hN | 21.39 | HC |
| SRR7265381 | embryo | 1hN | 26.37 | HC |
| SRR7265382 | embryo | 3hA | 31.31 | HC |
| SRR7265383 | embryo | 3hA | 35.98 | HC |
| SRR7265384 | embryo | 3hA | 34.55 | HC |
| SRR7265385 | embryo | 3hN | 22.63 | HC |
| SRR7265386 | embryo | 3hN | 24.23 | HC |
| SRR7265387 | embryo | 3hN | 10.79 | HC |
| SRR7265388 | embryo | 12hA | 37.55 | HC |
| SRR7265389 | embryo | 12hA | 30.54 | HC |
| SRR7265390 | embryo | 12hA | 41.37 | HC |
| SRR7265391 | embryo | 12hN | 39.18 | HC |
| SRR7265392 | embryo | 12hN | 32.59 | HC |
| SRR7265393 | embryo | 12hN | 37.59 | HC |
| SRR7265394 | embryo | 24hA | 21.24 | HC |
| SRR7265395 | embryo | 24hA | 32.19 | HC |
| SRR7265396 | embryo | 24hA | 30.51 | HC |
| SRR7265397 | embryo | 24hN | 30.88 | HC |
| SRR7265398 | embryo | 24hN | 31.59 | HC |
| SRR7265399 | embryo | 24hN | 23.49 | HC |
| SRR2338866 | endosprem | control | 9.35 | HC |
| SRR2338868 | endosprem | high_temperature | 2.73 | HC |
| SRR1213690 | flower | wt(flower buds) | 10.05 | HC |
| SRR1213691 | flower | wt | 5.12 | HC |
| SRR5856927 | leaf | control | 3.53 | HC |
| SRR5856928 | leaf | control | 8.15 | HC |
| SRR5856930 | leaf | salt | 11.24 | HC |
| SRR5856931 | leaf | salt | 9.08 | HC |
| SRR5856932 | leaf | salt | 10.39 | HC |
| SRR5856933 | leaf | control | 17.21 | HC |
| SRR5856935 | leaf | control | 12.44 | HC |
| SRR5856936 | leaf | salt | 11.25 | HC |
| SRR5856937 | leaf | salt | 12.20 | HC |
| SRR5856938 | leaf | salt | 13.34 | HC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 15.50 | HC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 3.90 | HC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 6.17 | HC |
| SRR5110429 | panicle | Dawn | 19.59 | HC |
| SRR5110430 | panicle | Dawn | 20.99 | HC |
| SRR5110431 | panicle | Dawn | 10.86 | HC |
| SRR5110432 | panicle | Dawn | 24.82 | HC |
| SRR5110433 | panicle | Dawn + 3.5h | 22.94 | HC |
| SRR5110435 | panicle | Dawn + 3.5h | 12.36 | HC |
| SRR5110436 | panicle | Dawn + 3.5h | 27.68 | HC |
| SRR5110438 | panicle | Dawn + 7h | 5.83 | HC |
| SRR5110439 | panicle | Dawn + 7h | 6.45 | HC |
| SRR5110440 | panicle | Dawn + 7h | 6.77 | HC |
| SRR5110442 | panicle | Dawn + 10.5h | 12.95 | HC |
| SRR5110443 | panicle | Dawn + 10.5h | 6.59 | HC |
| SRR5110444 | panicle | Dawn + 10.5h | 20.83 | HC |
| SRR5110445 | panicle | Dusk | 10.66 | HC |
| SRR5110446 | panicle | Dusk | 13.44 | HC |
| SRR5110447 | panicle | Dusk | 15.28 | HC |
| SRR5110448 | panicle | Dusk | 51.61 | HC |
| SRR5110449 | panicle | Dawn + 14h | 19.61 | HC |
| SRR5110450 | panicle | Dawn + 14h | 14.86 | HC |
| SRR5110451 | panicle | Dawn + 14h | 13.82 | HC |
| SRR5110452 | panicle | Dawn + 14h | 23.96 | HC |
| SRR5110453 | panicle | Dawn + 17.5h | 14.10 | HC |
| SRR5110454 | panicle | Dawn + 17.5h | 20.85 | HC |
| SRR5110455 | panicle | Dawn + 17.5h | 10.59 | HC |
| SRR5110456 | panicle | Dawn + 17.5h | 34.13 | HC |
| SRR5110457 | panicle | Dawn + 21h | 14.40 | HC |
| SRR5110458 | panicle | Dawn + 21h | 9.84 | HC |
| SRR5110459 | panicle | Dawn + 21h | 26.68 | HC |
| SRR5110460 | panicle | Dawn + 21h | 22.06 | HC |
| SRR1213696 | endosprem | wt(milk grains) | 5.25 | HC |
| SRR1213697 | endosprem | wt(mature seeds) | 6.39 | HC |
| SRR1633182 | panicle | WT | 64.67 | HC |
| SRR1633185 | panicle | WT | 122.13 | HC |
| SRR5126147 | root | "mock,1_day" | 5.12 | HC |
| SRR5126148 | root | "mock,1_day" | 4.19 | HC |
| SRR5126149 | root | "mock,1_day" | 7.46 | HC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 8.33 | HC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 5.01 | HC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 14.61 | HC |
| SRR5126153 | root | "mock,7_days" | 14.60 | HC |
| SRR5126155 | root | "mock,7_days" | 6.60 | HC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 7.65 | HC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 14.45 | HC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 12.82 | HC |
| SRR5126165 | root | "mock,14_days" | 6.34 | HC |
| SRR5126167 | root | "mock,14_days" | 6.99 | HC |
| SRR5126169 | root | "mock,14_days" | 15.56 | HC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 18.22 | HC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 5.14 | HC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 7.42 | HC |
| SRR3472897 | root | nontransgenic_rice_plant | 5.36 | HC |
| SRR3472900 | root | nontransgenic_rice_plant | 3.60 | HC |
| SRR1213694 | root | wt | 6.71 | HC |
| SRR4947480 | root | control | 9.76 | HC |
| SRR4947482 | root | Al | 23.81 | HC |
| SRR4947485 | root | Al | 8.78 | HC |
| SRR4947494 | root | control | 5.54 | HC |
| SRR4947498 | root | Al | 57.89 | HC |
| SRR4947500 | root | Al | 7.53 | HC |
| SRR4947501 | root | Al | 12.56 | HC |
| SRR4947506 | root | Al | 4.55 | HC |
| SRR4947508 | root | Al | 9.29 | HC |
| SRR6502091 | root | 100 mM NaCl | 28.88 | HC |
| SRR6502092 | root | 100 mM NaCl | 32.21 | HC |
| SRR6502093 | root | 100 mM NaCl | 24.02 | HC |
| SRR6502095 | root | control | 27.49 | HC |
| SRR6502096 | root | control | 14.35 | HC |
| SRR6502103 | root | 100 mM NaCl | 27.19 | HC |
| SRR6502104 | root | 100 mM NaCl | 16.52 | HC |
| SRR6502105 | root | 100 mM NaCl | 15.68 | HC |
| SRR6502106 | root | control | 23.96 | HC |
| SRR6502107 | root | control | 23.13 | HC |
| SRR6502108 | root | control | 25.69 | HC |
| SRR1740434 | root_differentiation_zone | wt | 11.56 | HC |
| SRR1740435 | root_differentiation_zone | wt | 9.16 | HC |
| SRR1740431 | root_elongation_zone | wt | 23.87 | HC |
| SRR1740432 | root_elongation_zone | wt | 13.67 | HC |
| SRR1740433 | root_elongation_zone | wt | 12.93 | HC |
| SRR1740428 | root_meristematic_zone | wt | 20.67 | HC |
| SRR1740429 | root_meristematic_zone | wt | 51.68 | HC |
| SRR1740430 | root_meristematic_zone | wt | 20.49 | HC |
| SRR2154082 | seedling | wt | 13.28 | HC |
| SRR2154083 | seedling | wt | 12.26 | HC |
| SRR2154084 | seedling | wt | 13.47 | HC |
| SRR2154087 | seedling | wt | 12.74 | HC |
| SRR2857721 | seedling | drought_stress_6h | 5.10 | HC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 12.50 | HC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 9.56 | HC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 8.42 | HC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 11.65 | HC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 10.92 | HC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 11.06 | HC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 8.33 | HC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 8.78 | HC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 8.38 | HC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 37.15 | HC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 93.82 | HC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 87.91 | HC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 28.89 | HC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 78.31 | HC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 15.42 | HC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 82.64 | HC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 38.91 | HC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 47.18 | HC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 108.46 | HC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 67.20 | HC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 109.88 | HC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 105.49 | HC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 14.23 | HC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 105.20 | HC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 99.42 | HC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 19.80 | HC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 28.12 | HC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 49.22 | HC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 107.01 | HC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 20.61 | HC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 40.78 | HC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 37.26 | HC |
| SRR1617550 | shoot_apical_meristem | no collect | 14.62 | HC |
| SRR1617553 | shoot_apical_meristem | no collect | 59.40 | HC |
| SRR1617556 | shoot_apical_meristem | no collect | 44.38 | HC |
| SRR1617557 | shoot_apical_meristem | no collect | 67.82 | HC |
| SRR1617558 | shoot_apical_meristem | no collect | 13.72 | HC |
| SRR1617559 | shoot_apical_meristem | no collect | 18.39 | HC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 31.66 | HC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 27.83 | HC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 40.30 | HC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 41.56 | HC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 32.65 | HC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 37.70 | HC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 20.26 | HC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 24.06 | HC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 22.71 | HC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 8.37 | HC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 8.30 | HC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 4.89 | HC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 8.86 | HC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 6.55 | HC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 3.72 | HC |