| SRR358795 | callus | wt | 120.98 | HC |
| SRR358796 | callus | wt | 107.05 | HC |
| SRR358797 | callus | wt | 159.57 | HC |
| SRR358798 | callus | wt | 160.54 | HC |
| SRR6320498 | carpel | wt | 11.60 | HC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 19.48 | HC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 17.02 | HC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 10.73 | HC |
| SRR4947495 | root | control | 50.77 | HC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 10.99 | HC |
| SRR7265400 | coleoptile | 2dA | 46.43 | HC |
| SRR7265401 | coleoptile | 2dA | 42.67 | HC |
| SRR7265402 | coleoptile | 2dA | 42.07 | HC |
| SRR7265403 | coleoptile | 2dN | 95.22 | HC |
| SRR7265404 | coleoptile | 2dN | 103.68 | HC |
| SRR7265405 | coleoptile | 2dN | 84.74 | HC |
| SRR7265406 | coleoptile | 3dA | 18.09 | HC |
| SRR7265407 | coleoptile | 3dA | 19.73 | HC |
| SRR7265408 | coleoptile | 3dA | 12.18 | HC |
| SRR7265409 | coleoptile | 3dN | 62.18 | HC |
| SRR7265410 | coleoptile | 3dN | 51.84 | HC |
| SRR7265411 | coleoptile | 3dN | 53.34 | HC |
| SRR7265412 | coleoptile | 4dA | 24.50 | HC |
| SRR7265413 | coleoptile | 4dA | 56.58 | HC |
| SRR7265414 | coleoptile | 4dA | 38.07 | HC |
| SRR7265415 | coleoptile | 4dN | 69.59 | HC |
| SRR7265416 | coleoptile | 4dN | 57.82 | HC |
| SRR7265417 | coleoptile | 4dN | 56.90 | HC |
| SRR7265418 | coleoptile | 3dN1dA | 5.84 | HC |
| SRR7265419 | coleoptile | 3dN1dA | 5.61 | HC |
| SRR7265420 | coleoptile | 3dN1dA | 6.32 | HC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 35.54 | HC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 49.03 | HC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 18.20 | HC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 5.39 | HC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 25.98 | HC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 13.59 | HC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 23.40 | HC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 15.79 | HC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 29.75 | HC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 18.74 | HC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 16.90 | HC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 16.84 | HC |
| SRR7265373 | embryo | dry seed 0 h | 8.48 | HC |
| SRR7265374 | embryo | dry seed 0 h | 9.47 | HC |
| SRR7265375 | embryo | dry seed 0 h | 3.31 | HC |
| SRR7265376 | embryo | 1hA | 11.19 | HC |
| SRR7265377 | embryo | 1hA | 13.43 | HC |
| SRR7265378 | embryo | 1hA | 10.87 | HC |
| SRR7265379 | embryo | 1hN | 10.09 | HC |
| SRR7265380 | embryo | 1hN | 10.74 | HC |
| SRR7265381 | embryo | 1hN | 11.00 | HC |
| SRR7265382 | embryo | 3hA | 58.24 | HC |
| SRR7265383 | embryo | 3hA | 46.88 | HC |
| SRR7265384 | embryo | 3hA | 50.72 | HC |
| SRR7265385 | embryo | 3hN | 17.69 | HC |
| SRR7265386 | embryo | 3hN | 12.14 | HC |
| SRR7265387 | embryo | 3hN | 16.31 | HC |
| SRR7265388 | embryo | 12hA | 71.88 | HC |
| SRR7265389 | embryo | 12hA | 83.94 | HC |
| SRR7265390 | embryo | 12hA | 68.34 | HC |
| SRR7265391 | embryo | 12hN | 134.89 | HC |
| SRR7265392 | embryo | 12hN | 108.05 | HC |
| SRR7265393 | embryo | 12hN | 114.30 | HC |
| SRR7265394 | embryo | 24hA | 35.41 | HC |
| SRR7265395 | embryo | 24hA | 56.65 | HC |
| SRR7265396 | embryo | 24hA | 52.02 | HC |
| SRR7265397 | embryo | 24hN | 94.26 | HC |
| SRR7265398 | embryo | 24hN | 86.95 | HC |
| SRR7265399 | embryo | 24hN | 80.99 | HC |
| SRR2338867 | endosprem | control | 3.82 | HC |
| SRR2338869 | endosprem | high_temperature | 3.91 | HC |
| SRR1213690 | flower | wt(flower buds) | 6.12 | HC |
| SRR1213691 | flower | wt | 7.08 | HC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 5.95 | HC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 6.51 | HC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 4.84 | HC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 6.32 | HC |
| SRR6216698 | leaf | nontransgenic rice plant | 31.61 | HC |
| SRR6216699 | leaf | nontransgenic rice plant | 31.45 | HC |
| SRR6502098 | leaf | 100 mM NaCl | 9.57 | HC |
| SRR5856927 | leaf | control | 7.22 | HC |
| SRR5856928 | leaf | control | 8.83 | HC |
| SRR5856929 | leaf | control | 13.25 | HC |
| SRR5856930 | leaf | salt | 27.24 | HC |
| SRR5856931 | leaf | salt | 19.62 | HC |
| SRR5856932 | leaf | salt | 18.19 | HC |
| SRR5856933 | leaf | control | 8.56 | HC |
| SRR5856934 | leaf | control | 5.64 | HC |
| SRR5856935 | leaf | control | 4.48 | HC |
| SRR5856936 | leaf | salt | 10.98 | HC |
| SRR5856937 | leaf | salt | 15.17 | HC |
| SRR5856938 | leaf | salt | 11.46 | HC |
| SRR6168973 | leaf | none (control) | 6.32 | HC |
| SRR6168974 | leaf | none (control) | 9.48 | HC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 36.81 | HC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 15.58 | HC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 4.91 | HC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 3.18 | HC |
| SRR8582891 | panicle | PM | 8.55 | HC |
| SRR8582892 | panicle | PM | 9.76 | HC |
| SRR5110429 | panicle | Dawn | 5.37 | HC |
| SRR5110431 | panicle | Dawn | 6.12 | HC |
| SRR5110432 | panicle | Dawn | 4.13 | HC |
| SRR4947496 | root | control | 56.61 | HC |
| SRR5110444 | panicle | Dawn + 10.5h | 5.90 | HC |
| SRR5110448 | panicle | Dusk | 6.20 | HC |
| SRR5110451 | panicle | Dawn + 14h | 3.77 | HC |
| SRR5110453 | panicle | Dawn + 17.5h | 3.96 | HC |
| SRR5110459 | panicle | Dawn + 21h | 4.50 | HC |
| SRR1213696 | endosprem | wt(milk grains) | 2.82 | HC |
| SRR1633182 | panicle | WT | 61.71 | HC |
| SRR1633185 | panicle | WT | 57.34 | HC |
| SRR5278374 | pistil | "Balilla,S1" | 3.64 | HC |
| SRR5278375 | pistil | "Balilla,S1" | 4.90 | HC |
| SRR5278376 | pistil | "Balilla,S2" | 4.96 | HC |
| SRR5278377 | pistil | "Balilla,S2" | 7.02 | HC |
| SRR5278378 | pistil | "Balilla,S3" | 47.19 | HC |
| SRR5278379 | pistil | "Balilla,S3" | 31.52 | HC |
| SRR5126147 | root | "mock,1_day" | 56.17 | HC |
| SRR5126148 | root | "mock,1_day" | 48.70 | HC |
| SRR5126149 | root | "mock,1_day" | 62.80 | HC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 40.16 | HC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 43.48 | HC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 25.81 | HC |
| SRR5126153 | root | "mock,7_days" | 65.95 | HC |
| SRR5126155 | root | "mock,7_days" | 68.35 | HC |
| SRR5126157 | root | "mock,7_days" | 77.55 | HC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 61.96 | HC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 69.15 | HC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 115.20 | HC |
| SRR5126165 | root | "mock,14_days" | 90.49 | HC |
| SRR5126167 | root | "mock,14_days" | 70.72 | HC |
| SRR5126169 | root | "mock,14_days" | 115.78 | HC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 94.67 | HC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 51.05 | HC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 89.73 | HC |
| SRR3472897 | root | nontransgenic_rice_plant | 58.51 | HC |
| SRR3472900 | root | nontransgenic_rice_plant | 31.81 | HC |
| SRR1213694 | root | wt | 29.01 | HC |
| SRR4947478 | root | control | 46.54 | HC |
| SRR4947479 | root | control | 33.68 | HC |
| SRR4947480 | root | control | 49.10 | HC |
| SRR4947481 | root | control | 94.85 | HC |
| SRR4947482 | root | Al | 12.49 | HC |
| SRR4947483 | root | Al | 28.48 | HC |
| SRR4947484 | root | Al | 34.32 | HC |
| SRR4947485 | root | Al | 58.47 | HC |
| SRR4947487 | root | control | 27.07 | HC |
| SRR4947488 | root | control | 36.97 | HC |
| SRR4947489 | root | control | 38.81 | HC |
| SRR4947490 | root | Al | 61.67 | HC |
| SRR4947491 | root | Al | 30.97 | HC |
| SRR4947492 | root | Al | 60.27 | HC |
| SRR4947493 | root | Al | 48.99 | HC |
| SRR4947494 | root | control | 69.74 | HC |
| SRR4947497 | root | control | 34.55 | HC |
| SRR4947498 | root | Al | 59.83 | HC |
| SRR4947499 | root | Al | 57.08 | HC |
| SRR4947500 | root | Al | 59.00 | HC |
| SRR4947501 | root | Al | 52.09 | HC |
| SRR4947502 | root | control | 67.43 | HC |
| SRR4947503 | root | control | 65.98 | HC |
| SRR4947504 | root | control | 113.02 | HC |
| SRR4947505 | root | control | 90.83 | HC |
| SRR4947506 | root | Al | 58.89 | HC |
| SRR4947507 | root | Al | 44.18 | HC |
| SRR4947508 | root | Al | 50.59 | HC |
| SRR4947509 | root | Al | 88.70 | HC |
| SRR6502091 | root | 100 mM NaCl | 165.57 | HC |
| SRR6502092 | root | 100 mM NaCl | 142.37 | HC |
| SRR6502093 | root | 100 mM NaCl | 180.76 | HC |
| SRR6502094 | root | control | 92.50 | HC |
| SRR6502095 | root | control | 93.75 | HC |
| SRR6502096 | root | control | 101.74 | HC |
| SRR6502103 | root | 100 mM NaCl | 127.47 | HC |
| SRR6502104 | root | 100 mM NaCl | 168.82 | HC |
| SRR6502105 | root | 100 mM NaCl | 91.38 | HC |
| SRR6502106 | root | control | 68.62 | HC |
| SRR6502107 | root | control | 85.94 | HC |
| SRR6502108 | root | control | 106.83 | HC |
| SRR1740434 | root_differentiation_zone | wt | 5.65 | HC |
| SRR1740435 | root_differentiation_zone | wt | 5.73 | HC |
| SRR1740436 | root_differentiation_zone | wt | 8.61 | HC |
| SRR1740431 | root_elongation_zone | wt | 6.97 | HC |
| SRR1740432 | root_elongation_zone | wt | 8.95 | HC |
| SRR1740433 | root_elongation_zone | wt | 6.84 | HC |
| SRR1740428 | root_meristematic_zone | wt | 6.66 | HC |
| SRR1740429 | root_meristematic_zone | wt | 8.35 | HC |
| SRR1740430 | root_meristematic_zone | wt | 11.85 | HC |
| SRR2154086 | seedling | wt | 13.46 | HC |
| SRR2154082 | seedling | wt | 5.48 | HC |
| SRR2154083 | seedling | wt | 6.52 | HC |
| SRR2154084 | seedling | wt | 5.99 | HC |
| SRR2154085 | seedling | wt | 12.55 | HC |
| SRR2154087 | seedling | wt | 9.71 | HC |
| SRR3098743 | seedling | wt | 3.41 | HC |
| SRR2857719 | seedling | drought_stress_0h | 63.35 | HC |
| SRR2857720 | seedling | drought_stress_1h | 17.76 | HC |
| SRR2857721 | seedling | drought_stress_6h | 4.55 | HC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 3.67 | HC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 8.43 | HC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 7.53 | HC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 35.12 | HC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 28.96 | HC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 30.54 | HC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 28.46 | HC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 44.40 | HC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 25.22 | HC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 17.73 | HC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 22.80 | HC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 20.08 | HC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 21.06 | HC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 18.02 | HC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 18.50 | HC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 30.51 | HC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 21.65 | HC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 27.38 | HC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 20.52 | HC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 21.27 | HC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 19.30 | HC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 25.13 | HC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 30.30 | HC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 16.00 | HC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 35.08 | HC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 33.77 | HC |
| SRR1617549 | shoot_apical_meristem | no collect | 54.78 | HC |
| SRR1617550 | shoot_apical_meristem | no collect | 46.62 | HC |
| SRR1617553 | shoot_apical_meristem | no collect | 22.96 | HC |
| SRR1617554 | shoot_apical_meristem | no collect | 37.31 | HC |
| SRR1617556 | shoot_apical_meristem | no collect | 27.53 | HC |
| SRR1617557 | shoot_apical_meristem | no collect | 36.93 | HC |
| SRR1617558 | shoot_apical_meristem | no collect | 40.24 | HC |
| SRR1617559 | shoot_apical_meristem | no collect | 39.08 | HC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 9.34 | HC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 6.98 | HC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 7.63 | HC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 12.84 | HC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 8.48 | HC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 12.96 | HC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 5.80 | HC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 7.26 | HC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 5.23 | HC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 4.81 | HC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 3.79 | HC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 2.85 | HC |