| SRR3745125 | anther | wt | 7.22 | HC |
| SRR3745126 | anther | wt | 8.49 | HC |
| SRR358795 | callus | wt | 43.90 | HC |
| SRR358796 | callus | wt | 48.31 | HC |
| SRR358797 | callus | wt | 49.97 | HC |
| SRR358798 | callus | wt | 48.81 | HC |
| SRR6320498 | carpel | wt | 12.25 | HC |
| SRR5560727 | caryopsis | wild_type | 7.36 | HC |
| SRR5560728 | caryopsis | wild_type | 6.98 | HC |
| SRR5560729 | caryopsis | wild_type | 6.59 | HC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 7.82 | HC |
| SRR4947495 | root | control | 8.40 | HC |
| SRR7265400 | coleoptile | 2dA | 7.75 | HC |
| SRR7265401 | coleoptile | 2dA | 6.55 | HC |
| SRR7265402 | coleoptile | 2dA | 4.01 | HC |
| SRR7265403 | coleoptile | 2dN | 7.34 | HC |
| SRR7265404 | coleoptile | 2dN | 7.30 | HC |
| SRR7265405 | coleoptile | 2dN | 9.23 | HC |
| SRR7265406 | coleoptile | 3dA | 4.06 | HC |
| SRR7265407 | coleoptile | 3dA | 4.74 | HC |
| SRR7265409 | coleoptile | 3dN | 6.17 | HC |
| SRR7265410 | coleoptile | 3dN | 24.33 | HC |
| SRR7265411 | coleoptile | 3dN | 3.77 | HC |
| SRR7265412 | coleoptile | 4dA | 3.76 | HC |
| SRR7265415 | coleoptile | 4dN | 40.71 | HC |
| SRR7265417 | coleoptile | 4dN | 4.51 | HC |
| SRR7265418 | coleoptile | 3dN1dA | 5.81 | HC |
| SRR7265419 | coleoptile | 3dN1dA | 6.28 | HC |
| SRR7265420 | coleoptile | 3dN1dA | 17.41 | HC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 7.05 | HC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 5.65 | HC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 9.19 | HC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 8.60 | HC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 6.64 | HC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 5.80 | HC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 8.64 | HC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 7.37 | HC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 12.00 | HC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 7.90 | HC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 6.15 | HC |
| SRR7265373 | embryo | dry seed 0 h | 8.73 | HC |
| SRR7265374 | embryo | dry seed 0 h | 9.70 | HC |
| SRR7265375 | embryo | dry seed 0 h | 4.92 | HC |
| SRR7265377 | embryo | 1hA | 5.99 | HC |
| SRR7265378 | embryo | 1hA | 6.01 | HC |
| SRR7265379 | embryo | 1hN | 8.25 | HC |
| SRR7265380 | embryo | 1hN | 9.47 | HC |
| SRR7265381 | embryo | 1hN | 5.50 | HC |
| SRR7265382 | embryo | 3hA | 9.33 | HC |
| SRR7265383 | embryo | 3hA | 9.12 | HC |
| SRR7265384 | embryo | 3hA | 7.61 | HC |
| SRR7265385 | embryo | 3hN | 16.70 | HC |
| SRR7265386 | embryo | 3hN | 6.36 | HC |
| SRR7265387 | embryo | 3hN | 5.73 | HC |
| SRR7265388 | embryo | 12hA | 11.06 | HC |
| SRR7265389 | embryo | 12hA | 9.72 | HC |
| SRR7265390 | embryo | 12hA | 8.20 | HC |
| SRR7265391 | embryo | 12hN | 6.01 | HC |
| SRR7265392 | embryo | 12hN | 10.19 | HC |
| SRR7265393 | embryo | 12hN | 9.30 | HC |
| SRR7265394 | embryo | 24hA | 5.68 | HC |
| SRR7265395 | embryo | 24hA | 29.80 | HC |
| SRR7265396 | embryo | 24hA | 5.71 | HC |
| SRR7265397 | embryo | 24hN | 13.20 | HC |
| SRR7265398 | embryo | 24hN | 5.39 | HC |
| SRR7265399 | embryo | 24hN | 22.71 | HC |
| SRR2338868 | endosprem | high_temperature | 8.80 | HC |
| SRR1213691 | flower | wt | 8.89 | HC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 5.19 | HC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 6.29 | HC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 7.62 | HC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 8.11 | HC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 5.55 | HC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 4.44 | HC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 5.29 | HC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 3.99 | HC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 7.06 | HC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 6.47 | HC |
| SRR1761788 | leaf | "wild_type,drought,2" | 6.01 | HC |
| SRR1761789 | leaf | "wild_type,drought,2" | 7.47 | HC |
| SRR1761790 | leaf | "wild_type,control,2" | 6.86 | HC |
| SRR1761791 | leaf | "wild_type,control,2" | 5.89 | HC |
| SRR1761780 | leaf | "wild_type,drought,1" | 6.01 | HC |
| SRR1761781 | leaf | "wild_type,drought,1" | 7.47 | HC |
| SRR1761782 | leaf | "wild_type,control,1" | 6.86 | HC |
| SRR1761783 | leaf | "wild_type,control,1" | 5.89 | HC |
| SRR1761528 | leaf | drought | 6.01 | HC |
| SRR1761529 | leaf | drought | 7.47 | HC |
| SRR1761530 | leaf | control | 6.86 | HC |
| SRR1761531 | leaf | control | 5.89 | HC |
| SRR504365 | leaf | wt | 4.42 | HC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 6.93 | HC |
| SRR3209770 | leaf | Watered;Long_Day | 4.33 | HC |
| SRR3209771 | leaf | Drought;Long_Day | 5.99 | HC |
| SRR3209772 | leaf | Drought;Long_Day | 5.74 | HC |
| SRR3209775 | leaf | Drought;Short_Day | 8.16 | HC |
| SRR3209777 | leaf | Watered;Long_Day | 3.50 | HC |
| SRR3209778 | leaf | Drought;Long_Day | 8.29 | HC |
| SRR3209780 | leaf | Drought;Short_Day | 10.21 | HC |
| SRR6216698 | leaf | nontransgenic rice plant | 5.90 | HC |
| SRR6216699 | leaf | nontransgenic rice plant | 5.47 | HC |
| SRR6502087 | leaf | 100 mM NaCl | 11.84 | HC |
| SRR6502090 | leaf | control | 6.30 | HC |
| SRR6502098 | leaf | 100 mM NaCl | 10.11 | HC |
| SRR6502099 | leaf | 100 mM NaCl | 7.70 | HC |
| SRR6502102 | leaf | control | 5.20 | HC |
| SRR5856927 | leaf | control | 3.16 | HC |
| SRR5856929 | leaf | control | 2.92 | HC |
| SRR5856933 | leaf | control | 4.77 | HC |
| SRR5856934 | leaf | control | 3.82 | HC |
| SRR5856935 | leaf | control | 3.34 | HC |
| SRR5856936 | leaf | salt | 2.54 | HC |
| SRR5856937 | leaf | salt | 2.00 | HC |
| SRR5856938 | leaf | salt | 2.48 | HC |
| SRR6053394 | leaf | ethanol solvent (untreated control) | 9.46 | HC |
| SRR6053399 | leaf | Paclobutrazol (PB) | 6.86 | HC |
| SRR6168973 | leaf | none (control) | 9.83 | HC |
| SRR6168974 | leaf | none (control) | 12.77 | HC |
| SRR6168975 | leaf | none (control) | 16.33 | HC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 14.19 | HC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 13.16 | HC |
| SRR6168979 | leaf | none (control) | 2.14 | HC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 3.27 | HC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 2.75 | HC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 6.76 | HC |
| SRR8582891 | panicle | PM | 10.68 | HC |
| SRR8582893 | panicle | PM | 6.34 | HC |
| SRR5110429 | panicle | Dawn | 7.58 | HC |
| SRR5110430 | panicle | Dawn | 12.39 | HC |
| SRR5110431 | panicle | Dawn | 11.33 | HC |
| SRR5110432 | panicle | Dawn | 6.94 | HC |
| SRR4947496 | root | control | 20.25 | HC |
| SRR5110434 | panicle | Dawn + 3.5h | 18.66 | HC |
| SRR5110435 | panicle | Dawn + 3.5h | 20.45 | HC |
| SRR5110436 | panicle | Dawn + 3.5h | 9.90 | HC |
| SRR5110437 | panicle | Dawn + 7h | 25.13 | HC |
| SRR5110438 | panicle | Dawn + 7h | 15.06 | HC |
| SRR5110439 | panicle | Dawn + 7h | 10.56 | HC |
| SRR5110441 | panicle | Dawn + 10.5h | 31.21 | HC |
| SRR5110442 | panicle | Dawn + 10.5h | 31.05 | HC |
| SRR5110443 | panicle | Dawn + 10.5h | 4.56 | HC |
| SRR5110444 | panicle | Dawn + 10.5h | 32.55 | HC |
| SRR5110445 | panicle | Dusk | 9.30 | HC |
| SRR5110446 | panicle | Dusk | 7.15 | HC |
| SRR5110447 | panicle | Dusk | 7.05 | HC |
| SRR5110448 | panicle | Dusk | 27.59 | HC |
| SRR5110450 | panicle | Dawn + 14h | 5.70 | HC |
| SRR5110451 | panicle | Dawn + 14h | 23.10 | HC |
| SRR5110452 | panicle | Dawn + 14h | 6.86 | HC |
| SRR5110453 | panicle | Dawn + 17.5h | 25.04 | HC |
| SRR5110454 | panicle | Dawn + 17.5h | 16.07 | HC |
| SRR5110455 | panicle | Dawn + 17.5h | 6.57 | HC |
| SRR5110456 | panicle | Dawn + 17.5h | 30.19 | HC |
| SRR5110457 | panicle | Dawn + 21h | 10.75 | HC |
| SRR5110458 | panicle | Dawn + 21h | 4.97 | HC |
| SRR5110459 | panicle | Dawn + 21h | 12.81 | HC |
| SRR1213697 | endosprem | wt(mature seeds) | 6.53 | HC |
| SRR1633182 | panicle | WT | 14.30 | HC |
| SRR1633185 | panicle | WT | 14.21 | HC |
| SRR5278377 | pistil | "Balilla,S2" | 5.61 | HC |
| SRR5278378 | pistil | "Balilla,S3" | 10.16 | HC |
| SRR5278379 | pistil | "Balilla,S3" | 7.17 | HC |
| SRR5126153 | root | "mock,7_days" | 4.98 | HC |
| SRR5126155 | root | "mock,7_days" | 7.04 | HC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 10.36 | HC |
| SRR5126165 | root | "mock,14_days" | 6.09 | HC |
| SRR5126167 | root | "mock,14_days" | 6.83 | HC |
| SRR5126169 | root | "mock,14_days" | 7.86 | HC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 9.10 | HC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 5.85 | HC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 9.26 | HC |
| SRR3472897 | root | nontransgenic_rice_plant | 5.75 | HC |
| SRR3472900 | root | nontransgenic_rice_plant | 5.76 | HC |
| SRR1213695 | root | wt | 6.20 | HC |
| SRR4947478 | root | control | 7.29 | HC |
| SRR4947479 | root | control | 7.93 | HC |
| SRR4947480 | root | control | 8.49 | HC |
| SRR4947481 | root | control | 8.80 | HC |
| SRR4947482 | root | Al | 16.51 | HC |
| SRR4947483 | root | Al | 6.65 | HC |
| SRR4947484 | root | Al | 6.94 | HC |
| SRR4947487 | root | control | 5.00 | HC |
| SRR4947488 | root | control | 12.68 | HC |
| SRR4947489 | root | control | 21.66 | HC |
| SRR4947490 | root | Al | 25.48 | HC |
| SRR4947491 | root | Al | 23.34 | HC |
| SRR4947492 | root | Al | 6.55 | HC |
| SRR4947497 | root | control | 34.51 | HC |
| SRR4947498 | root | Al | 6.86 | HC |
| SRR4947499 | root | Al | 7.02 | HC |
| SRR4947500 | root | Al | 9.28 | HC |
| SRR4947501 | root | Al | 6.45 | HC |
| SRR4947502 | root | control | 19.55 | HC |
| SRR4947503 | root | control | 6.56 | HC |
| SRR4947504 | root | control | 8.20 | HC |
| SRR4947505 | root | control | 21.77 | HC |
| SRR4947506 | root | Al | 7.87 | HC |
| SRR4947508 | root | Al | 29.06 | HC |
| SRR4947509 | root | Al | 12.55 | HC |
| SRR6502092 | root | 100 mM NaCl | 6.24 | HC |
| SRR6502093 | root | 100 mM NaCl | 19.32 | HC |
| SRR6502094 | root | control | 6.37 | HC |
| SRR6502095 | root | control | 17.18 | HC |
| SRR6502096 | root | control | 9.49 | HC |
| SRR6502103 | root | 100 mM NaCl | 5.44 | HC |
| SRR6502104 | root | 100 mM NaCl | 16.15 | HC |
| SRR6502105 | root | 100 mM NaCl | 4.64 | HC |
| SRR6502106 | root | control | 5.79 | HC |
| SRR6502107 | root | control | 6.82 | HC |
| SRR6502108 | root | control | 13.95 | HC |
| SRR1740435 | root_differentiation_zone | wt | 3.31 | HC |
| SRR1740436 | root_differentiation_zone | wt | 3.84 | HC |
| SRR1740431 | root_elongation_zone | wt | 4.90 | HC |
| SRR1740432 | root_elongation_zone | wt | 10.94 | HC |
| SRR1740433 | root_elongation_zone | wt | 18.62 | HC |
| SRR1740430 | root_meristematic_zone | wt | 17.45 | HC |
| SRR2154086 | seedling | wt | 15.69 | HC |
| SRR2154082 | seedling | wt | 5.02 | HC |
| SRR2154083 | seedling | wt | 16.54 | HC |
| SRR2154084 | seedling | wt | 15.00 | HC |
| SRR2154085 | seedling | wt | 5.52 | HC |
| SRR2154087 | seedling | wt | 5.24 | HC |
| SRR1944583 | seedling | no_treatment | 5.11 | HC |
| SRR358794 | seedling | wt | 6.81 | HC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 4.43 | HC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 4.69 | HC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 8.06 | HC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 9.08 | HC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 8.90 | HC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 8.13 | HC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 6.78 | HC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 6.04 | HC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 5.16 | HC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 4.18 | HC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 2.86 | HC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 5.37 | HC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 7.55 | HC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 11.33 | HC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 24.49 | HC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 11.08 | HC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 10.52 | HC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 14.53 | HC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 13.36 | HC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 11.27 | HC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 23.85 | HC |
| SRR1617550 | shoot_apical_meristem | no collect | 20.05 | HC |
| SRR1617553 | shoot_apical_meristem | no collect | 36.57 | HC |
| SRR1617554 | shoot_apical_meristem | no collect | 14.04 | HC |
| SRR1617556 | shoot_apical_meristem | no collect | 32.68 | HC |
| SRR1617557 | shoot_apical_meristem | no collect | 42.22 | HC |
| SRR1617559 | shoot_apical_meristem | no collect | 21.95 | HC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 19.28 | HC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 5.48 | HC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 15.76 | HC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 5.33 | HC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 23.29 | HC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 29.88 | HC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 13.09 | HC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 4.57 | HC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 12.06 | HC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 11.27 | HC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 18.60 | HC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 18.71 | HC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 11.59 | HC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 15.17 | HC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 6.67 | HC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 26.60 | HC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 24.35 | HC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 26.56 | HC |