| SRR4457249 | 2nd_leaf | DAH4 | 8.21 | HC |
| SRR4457253 | 2nd_leaf | DAH12 | 4.54 | HC |
| SRR358795 | callus | wt | 20.59 | HC |
| SRR358796 | callus | wt | 16.73 | HC |
| SRR358797 | callus | wt | 21.64 | HC |
| SRR358798 | callus | wt | 19.28 | HC |
| SRR5560727 | caryopsis | wild_type | 7.11 | HC |
| SRR5560728 | caryopsis | wild_type | 16.29 | HC |
| SRR5560729 | caryopsis | wild_type | 9.97 | HC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 12.90 | HC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 6.40 | HC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 5.63 | HC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 5.79 | HC |
| SRR7265400 | coleoptile | 2dA | 5.33 | HC |
| SRR7265404 | coleoptile | 2dN | 6.36 | HC |
| SRR7265405 | coleoptile | 2dN | 4.60 | HC |
| SRR7265406 | coleoptile | 3dA | 4.24 | HC |
| SRR7265409 | coleoptile | 3dN | 26.87 | HC |
| SRR7265411 | coleoptile | 3dN | 3.89 | HC |
| SRR7265412 | coleoptile | 4dA | 13.61 | HC |
| SRR7265413 | coleoptile | 4dA | 20.72 | HC |
| SRR7265414 | coleoptile | 4dA | 14.91 | HC |
| SRR7265415 | coleoptile | 4dN | 25.24 | HC |
| SRR7265416 | coleoptile | 4dN | 23.13 | HC |
| SRR7265417 | coleoptile | 4dN | 4.31 | HC |
| SRR7265420 | coleoptile | 3dN1dA | 22.10 | HC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 7.55 | HC |
| SRR7265373 | embryo | dry seed 0 h | 10.45 | HC |
| SRR7265374 | embryo | dry seed 0 h | 35.44 | HC |
| SRR7265375 | embryo | dry seed 0 h | 10.03 | HC |
| SRR7265382 | embryo | 3hA | 5.79 | HC |
| SRR7265384 | embryo | 3hA | 7.91 | HC |
| SRR7265385 | embryo | 3hN | 31.35 | HC |
| SRR7265388 | embryo | 12hA | 7.80 | HC |
| SRR7265389 | embryo | 12hA | 9.37 | HC |
| SRR7265391 | embryo | 12hN | 7.40 | HC |
| SRR7265392 | embryo | 12hN | 6.83 | HC |
| SRR7265394 | embryo | 24hA | 24.66 | HC |
| SRR7265395 | embryo | 24hA | 24.91 | HC |
| SRR7265396 | embryo | 24hA | 25.61 | HC |
| SRR7265397 | embryo | 24hN | 22.49 | HC |
| SRR7265398 | embryo | 24hN | 4.82 | HC |
| SRR7265399 | embryo | 24hN | 4.94 | HC |
| SRR2338866 | endosprem | control | 23.13 | HC |
| SRR2338867 | endosprem | control | 6.07 | HC |
| SRR2338868 | endosprem | high_temperature | 7.13 | HC |
| SRR2338869 | endosprem | high_temperature | 4.09 | HC |
| SRR4457231 | flag_leaf | DAH4 | 4.34 | HC |
| SRR4457233 | flag_leaf | DAH4 | 3.08 | HC |
| SRR4457243 | flag_leaf | DAH36 | 4.59 | HC |
| SRR4457246 | flag_leaf | DAH44 | 4.71 | HC |
| SRR1213690 | flower | wt(flower buds) | 6.77 | HC |
| SRR8060836 | leaf | wild_type | 7.02 | HC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 5.48 | HC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 7.40 | HC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 7.31 | HC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 13.22 | HC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 11.18 | HC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 7.77 | HC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 10.21 | HC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 20.86 | HC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 24.12 | HC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 13.35 | HC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 10.70 | HC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 21.33 | HC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 12.61 | HC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 8.02 | HC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 25.20 | HC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 8.56 | HC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 20.42 | HC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 19.41 | HC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 17.85 | HC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 7.07 | HC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 20.73 | HC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 17.74 | HC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 11.45 | HC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 10.58 | HC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 11.45 | HC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 18.01 | HC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 15.09 | HC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 11.66 | HC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 17.25 | HC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 11.36 | HC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 21.72 | HC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 9.19 | HC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 6.84 | HC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 7.13 | HC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 8.26 | HC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 10.64 | HC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 22.70 | HC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 8.92 | HC |
| SRR1761790 | leaf | "wild_type,control,2" | 13.93 | HC |
| SRR1761782 | leaf | "wild_type,control,1" | 13.93 | HC |
| SRR1761530 | leaf | control | 13.93 | HC |
| SRR504365 | leaf | wt | 23.04 | HC |
| SRR6417969 | leaf | H2O_control | 6.94 | HC |
| SRR3209769 | leaf | Watered;Long_Day | 3.24 | HC |
| SRR3209771 | leaf | Drought;Long_Day | 11.40 | HC |
| SRR3209772 | leaf | Drought;Long_Day | 5.36 | HC |
| SRR3209775 | leaf | Drought;Short_Day | 5.57 | HC |
| SRR3209776 | leaf | Drought;Short_Day | 4.13 | HC |
| SRR3209777 | leaf | Watered;Long_Day | 3.39 | HC |
| SRR3209778 | leaf | Drought;Long_Day | 4.36 | HC |
| SRR3209780 | leaf | Drought;Short_Day | 10.78 | HC |
| SRR8611900 | leaf | Non-inoculated | 8.88 | HC |
| SRR8611901 | leaf | Non-inoculated | 5.43 | HC |
| SRR8611902 | leaf | Non-inoculated | 10.27 | HC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 9.23 | HC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 7.17 | HC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 8.75 | HC |
| SRR6216698 | leaf | nontransgenic rice plant | 10.10 | HC |
| SRR6216699 | leaf | nontransgenic rice plant | 6.99 | HC |
| SRR1213692 | leaf | wt | 6.47 | HC |
| SRR1213693 | leaf | wt | 4.46 | HC |
| SRR6502086 | leaf | 100 mM NaCl | 7.63 | HC |
| SRR6502100 | leaf | control | 5.11 | HC |
| SRR6502101 | leaf | control | 7.14 | HC |
| SRR6502102 | leaf | control | 5.37 | HC |
| SRR5856928 | leaf | control | 7.42 | HC |
| SRR5856931 | leaf | salt | 7.27 | HC |
| SRR5856933 | leaf | control | 7.58 | HC |
| SRR5856935 | leaf | control | 7.27 | HC |
| SRR5856936 | leaf | salt | 6.15 | HC |
| SRR5856937 | leaf | salt | 5.20 | HC |
| SRR5856938 | leaf | salt | 2.67 | HC |
| SRR6053392 | leaf | ethanol solvent (untreated control) | 8.63 | HC |
| SRR6053393 | leaf | ethanol solvent (untreated control) | 8.03 | HC |
| SRR6168973 | leaf | none (control) | 40.66 | HC |
| SRR6168974 | leaf | none (control) | 46.91 | HC |
| SRR6168975 | leaf | none (control) | 34.45 | HC |
| SRR6168979 | leaf | none (control) | 2.01 | HC |
| SRR6168980 | leaf | none (control) | 5.32 | HC |
| SRR6168981 | leaf | none (control) | 16.00 | HC |
| SRR8582888 | panicle | AM | 6.23 | HC |
| SRR8582889 | panicle | AM | 1.96 | HC |
| SRR8582890 | panicle | AM | 7.88 | HC |
| SRR8582891 | panicle | PM | 24.86 | HC |
| SRR8582892 | panicle | PM | 15.31 | HC |
| SRR8582893 | panicle | PM | 19.13 | HC |
| SRR5110432 | panicle | Dawn | 5.94 | HC |
| SRR5110434 | panicle | Dawn + 3.5h | 6.30 | HC |
| SRR5110435 | panicle | Dawn + 3.5h | 4.61 | HC |
| SRR5110436 | panicle | Dawn + 3.5h | 7.97 | HC |
| SRR5110442 | panicle | Dawn + 10.5h | 9.34 | HC |
| SRR5110443 | panicle | Dawn + 10.5h | 6.05 | HC |
| SRR5110445 | panicle | Dusk | 6.02 | HC |
| SRR5110446 | panicle | Dusk | 9.56 | HC |
| SRR5110451 | panicle | Dawn + 14h | 11.06 | HC |
| SRR5110452 | panicle | Dawn + 14h | 9.28 | HC |
| SRR5110453 | panicle | Dawn + 17.5h | 4.36 | HC |
| SRR5110454 | panicle | Dawn + 17.5h | 5.44 | HC |
| SRR5110456 | panicle | Dawn + 17.5h | 6.25 | HC |
| SRR5110458 | panicle | Dawn + 21h | 3.64 | HC |
| SRR1213696 | endosprem | wt(milk grains) | 6.75 | HC |
| SRR1213697 | endosprem | wt(mature seeds) | 3.98 | HC |
| SRR5278374 | pistil | "Balilla,S1" | 4.22 | HC |
| SRR5278375 | pistil | "Balilla,S1" | 10.26 | HC |
| SRR5278376 | pistil | "Balilla,S2" | 14.74 | HC |
| SRR5278377 | pistil | "Balilla,S2" | 15.87 | HC |
| SRR5278378 | pistil | "Balilla,S3" | 21.21 | HC |
| SRR5278379 | pistil | "Balilla,S3" | 9.23 | HC |
| SRR5126147 | root | "mock,1_day" | 14.31 | HC |
| SRR5126148 | root | "mock,1_day" | 10.16 | HC |
| SRR5126149 | root | "mock,1_day" | 16.16 | HC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 14.94 | HC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 17.67 | HC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 12.77 | HC |
| SRR5126153 | root | "mock,7_days" | 9.48 | HC |
| SRR5126155 | root | "mock,7_days" | 9.94 | HC |
| SRR5126157 | root | "mock,7_days" | 29.16 | HC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 8.53 | HC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 12.35 | HC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 13.83 | HC |
| SRR5126165 | root | "mock,14_days" | 13.25 | HC |
| SRR5126167 | root | "mock,14_days" | 12.51 | HC |
| SRR5126169 | root | "mock,14_days" | 15.14 | HC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 8.44 | HC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 7.87 | HC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 14.24 | HC |
| SRR3472897 | root | nontransgenic_rice_plant | 4.02 | HC |
| SRR3472900 | root | nontransgenic_rice_plant | 6.70 | HC |
| SRR1213695 | root | wt | 8.42 | HC |
| SRR4947492 | root | Al | 9.66 | HC |
| SRR4947497 | root | control | 10.22 | HC |
| SRR4947498 | root | Al | 6.73 | HC |
| SRR4947501 | root | Al | 10.88 | HC |
| SRR4947505 | root | control | 10.49 | HC |
| SRR4947508 | root | Al | 6.08 | HC |
| SRR6502094 | root | control | 5.37 | HC |
| SRR6502096 | root | control | 4.59 | HC |
| SRR6502104 | root | 100 mM NaCl | 5.61 | HC |
| SRR6502105 | root | 100 mM NaCl | 5.96 | HC |
| SRR1740435 | root_differentiation_zone | wt | 4.93 | HC |
| SRR1740428 | root_meristematic_zone | wt | 12.51 | HC |
| SRR6441554 | seedling | wild_type | 10.18 | HC |
| SRR6441555 | seedling | wild_type | 10.89 | HC |
| SRR2154086 | seedling | wt | 22.18 | HC |
| SRR2154085 | seedling | wt | 17.88 | HC |
| SRR2154087 | seedling | wt | 12.27 | HC |
| SRR3098741 | seedling | wt | 6.20 | HC |
| SRR3098742 | seedling | wt | 6.77 | HC |
| SRR3098743 | seedling | wt | 7.64 | HC |
| SRR2857719 | seedling | drought_stress_0h | 16.23 | HC |
| SRR2857720 | seedling | drought_stress_1h | 19.99 | HC |
| SRR2857721 | seedling | drought_stress_6h | 24.85 | HC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 25.50 | HC |
| SRR358791 | seedling | wt | 20.71 | HC |
| SRR358792 | seedling | wt | 22.29 | HC |
| SRR358793 | seedling | wt | 28.78 | HC |
| SRR358794 | seedling | wt | 25.98 | HC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 12.06 | HC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 11.80 | HC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 8.34 | HC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 13.23 | HC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 7.09 | HC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 7.44 | HC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 14.09 | HC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 9.29 | HC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 12.71 | HC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 15.61 | HC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 22.28 | HC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 11.83 | HC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 21.91 | HC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 28.69 | HC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 16.49 | HC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 26.48 | HC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 31.69 | HC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 18.59 | HC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 25.77 | HC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 27.54 | HC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 7.42 | HC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 6.48 | HC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 5.38 | HC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 10.90 | HC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 9.55 | HC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 4.48 | HC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 6.39 | HC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 13.78 | HC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 9.66 | HC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 16.55 | HC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 9.16 | HC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 6.00 | HC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 4.05 | HC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 4.39 | HC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 3.15 | HC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 3.73 | HC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 4.30 | HC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 4.97 | HC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 28.18 | HC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 18.82 | HC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 9.06 | HC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 10.21 | HC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 17.04 | HC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 9.14 | HC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 9.90 | HC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 10.60 | HC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 10.44 | HC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 9.05 | HC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 20.51 | HC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 11.68 | HC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 20.09 | HC |
| SRR1617553 | shoot_apical_meristem | no collect | 29.19 | HC |
| SRR1617554 | shoot_apical_meristem | no collect | 9.32 | HC |
| SRR1617556 | shoot_apical_meristem | no collect | 16.99 | HC |
| SRR1617557 | shoot_apical_meristem | no collect | 31.87 | HC |
| SRR1617558 | shoot_apical_meristem | no collect | 11.21 | HC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 17.09 | HC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 11.39 | HC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 11.78 | HC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 12.64 | HC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 12.70 | HC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 10.93 | HC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 10.23 | HC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 5.04 | HC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 5.58 | HC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 7.51 | HC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 10.86 | HC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 5.78 | HC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 7.87 | HC |