| SRR5560727 | caryopsis | wild_type | 16.32 | HC |
| SRR5560728 | caryopsis | wild_type | 14.97 | HC |
| SRR5560729 | caryopsis | wild_type | 16.93 | HC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 3.96 | HC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 28.69 | HC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 42.98 | HC |
| SRR2338868 | endosprem | high_temperature | 3.49 | HC |
| SRR2338869 | endosprem | high_temperature | 3.64 | HC |
| SRR976168 | flag_leaf | wild_type | 27.87 | HC |
| SRR8240825 | leaf | wild_type | 3.23 | HC |
| SRR8240826 | leaf | wild_type | 3.55 | HC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 5.60 | HC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 4.75 | HC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 5.57 | HC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 6.63 | HC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 6.05 | HC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 5.35 | HC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 5.18 | HC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 5.24 | HC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 6.69 | HC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 5.57 | HC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 5.41 | HC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 4.76 | HC |
| SRR1761788 | leaf | "wild_type,drought,2" | 8.56 | HC |
| SRR1761789 | leaf | "wild_type,drought,2" | 7.57 | HC |
| SRR1761780 | leaf | "wild_type,drought,1" | 8.55 | HC |
| SRR1761781 | leaf | "wild_type,drought,1" | 7.57 | HC |
| SRR1761528 | leaf | drought | 8.55 | HC |
| SRR1761529 | leaf | drought | 7.57 | HC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 7.82 | HC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 4.66 | HC |
| SRR6417968 | leaf | H2O_control | 4.29 | HC |
| SRR3209771 | leaf | Drought;Long_Day | 5.82 | HC |
| SRR3209772 | leaf | Drought;Long_Day | 8.13 | HC |
| SRR3209775 | leaf | Drought;Short_Day | 7.44 | HC |
| SRR3209776 | leaf | Drought;Short_Day | 9.28 | HC |
| SRR3209778 | leaf | Drought;Long_Day | 8.59 | HC |
| SRR3209780 | leaf | Drought;Short_Day | 7.30 | HC |
| SRR8611900 | leaf | Non-inoculated | 66.58 | HC |
| SRR8611901 | leaf | Non-inoculated | 62.80 | HC |
| SRR8611902 | leaf | Non-inoculated | 62.46 | HC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 73.51 | HC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 64.59 | HC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 69.50 | HC |
| SRR6216698 | leaf | nontransgenic rice plant | 5.91 | HC |
| SRR6216699 | leaf | nontransgenic rice plant | 7.67 | HC |
| SRR1213693 | leaf | wt | 5.94 | HC |
| SRR6502099 | leaf | 100 mM NaCl | 5.30 | HC |
| SRR6168973 | leaf | none (control) | 38.15 | HC |
| SRR6168974 | leaf | none (control) | 50.43 | HC |
| SRR6168975 | leaf | none (control) | 187.99 | HC |
| SRR6168979 | leaf | none (control) | 56.84 | HC |
| SRR6168980 | leaf | none (control) | 56.33 | HC |
| SRR6168981 | leaf | none (control) | 34.19 | HC |
| SRR8582893 | panicle | PM | 5.29 | HC |
| SRR5278374 | pistil | "Balilla,S1" | 3.68 | HC |
| SRR5278379 | pistil | "Balilla,S3" | 10.09 | HC |
| SRR5126147 | root | "mock,1_day" | 4.99 | HC |
| SRR5126148 | root | "mock,1_day" | 6.39 | HC |
| SRR5126149 | root | "mock,1_day" | 6.04 | HC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 4.88 | HC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 5.13 | HC |
| SRR3472897 | root | nontransgenic_rice_plant | 3.09 | HC |
| SRR3472900 | root | nontransgenic_rice_plant | 4.86 | HC |
| SRR6502092 | root | 100 mM NaCl | 6.42 | HC |
| SRR6502105 | root | 100 mM NaCl | 8.73 | HC |
| SRR1740431 | root_elongation_zone | wt | 5.91 | HC |
| SRR1740432 | root_elongation_zone | wt | 6.96 | HC |
| SRR1740433 | root_elongation_zone | wt | 9.07 | HC |
| SRR1740429 | root_meristematic_zone | wt | 6.23 | HC |
| SRR1740430 | root_meristematic_zone | wt | 12.39 | HC |
| SRR6441554 | seedling | wild_type | 9.45 | HC |
| SRR6441555 | seedling | wild_type | 15.02 | HC |
| SRR3098741 | seedling | wt | 4.09 | HC |
| SRR3098742 | seedling | wt | 3.33 | HC |
| SRR3098743 | seedling | wt | 2.88 | HC |
| SRR2857721 | seedling | drought_stress_6h | 3.64 | HC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 5.14 | HC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 6.35 | HC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 6.40 | HC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 15.05 | HC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 16.87 | HC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 17.18 | HC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 8.35 | HC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 9.00 | HC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 11.86 | HC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 4.60 | HC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 4.68 | HC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 6.57 | HC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 5.98 | HC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 5.52 | HC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 4.23 | HC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 4.83 | HC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 4.37 | HC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 5.86 | HC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 2.92 | HC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 3.15 | HC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 3.33 | HC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 3.74 | HC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 5.43 | HC |
| SRR1617549 | shoot_apical_meristem | no collect | 10.71 | HC |
| SRR1617553 | shoot_apical_meristem | no collect | 8.30 | HC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 8.50 | HC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 8.69 | HC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 9.96 | HC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 6.22 | HC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 7.55 | HC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 5.97 | HC |