| SRR4457265 | 2nd_leaf | DAH44 | 6.84 | HC |
| SRR5560727 | caryopsis | wild_type | 9.85 | HC |
| SRR5560728 | caryopsis | wild_type | 11.18 | HC |
| SRR5560729 | caryopsis | wild_type | 11.24 | HC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 5.15 | HC |
| SRR4947495 | root | control | 26.71 | HC |
| SRR7265400 | coleoptile | 2dA | 19.37 | HC |
| SRR7265401 | coleoptile | 2dA | 20.16 | HC |
| SRR7265402 | coleoptile | 2dA | 18.56 | HC |
| SRR7265403 | coleoptile | 2dN | 17.17 | HC |
| SRR7265404 | coleoptile | 2dN | 18.72 | HC |
| SRR7265405 | coleoptile | 2dN | 17.15 | HC |
| SRR7265406 | coleoptile | 3dA | 10.96 | HC |
| SRR7265407 | coleoptile | 3dA | 11.29 | HC |
| SRR7265408 | coleoptile | 3dA | 7.19 | HC |
| SRR7265409 | coleoptile | 3dN | 15.10 | HC |
| SRR7265410 | coleoptile | 3dN | 11.88 | HC |
| SRR7265411 | coleoptile | 3dN | 11.88 | HC |
| SRR7265413 | coleoptile | 4dA | 10.10 | HC |
| SRR7265415 | coleoptile | 4dN | 10.99 | HC |
| SRR7265416 | coleoptile | 4dN | 10.38 | HC |
| SRR7265417 | coleoptile | 4dN | 9.25 | HC |
| SRR7265419 | coleoptile | 3dN1dA | 9.11 | HC |
| SRR7265420 | coleoptile | 3dN1dA | 8.08 | HC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 9.99 | HC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 12.96 | HC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 6.44 | HC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 8.31 | HC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 10.03 | HC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 8.76 | HC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 8.14 | HC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 10.18 | HC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 10.00 | HC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 10.73 | HC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 11.12 | HC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 11.46 | HC |
| SRR7265376 | embryo | 1hA | 8.39 | HC |
| SRR7265377 | embryo | 1hA | 9.85 | HC |
| SRR7265378 | embryo | 1hA | 12.05 | HC |
| SRR7265379 | embryo | 1hN | 9.92 | HC |
| SRR7265381 | embryo | 1hN | 10.41 | HC |
| SRR7265382 | embryo | 3hA | 19.72 | HC |
| SRR7265383 | embryo | 3hA | 21.11 | HC |
| SRR7265384 | embryo | 3hA | 18.25 | HC |
| SRR7265386 | embryo | 3hN | 10.20 | HC |
| SRR7265387 | embryo | 3hN | 10.65 | HC |
| SRR7265388 | embryo | 12hA | 29.22 | HC |
| SRR7265389 | embryo | 12hA | 33.66 | HC |
| SRR7265390 | embryo | 12hA | 27.54 | HC |
| SRR7265391 | embryo | 12hN | 28.45 | HC |
| SRR7265392 | embryo | 12hN | 27.97 | HC |
| SRR7265393 | embryo | 12hN | 30.34 | HC |
| SRR7265394 | embryo | 24hA | 21.69 | HC |
| SRR7265395 | embryo | 24hA | 28.18 | HC |
| SRR7265396 | embryo | 24hA | 21.81 | HC |
| SRR7265397 | embryo | 24hN | 23.86 | HC |
| SRR7265398 | embryo | 24hN | 21.85 | HC |
| SRR7265399 | embryo | 24hN | 23.28 | HC |
| SRR1213690 | flower | wt(flower buds) | 14.32 | HC |
| SRR1213691 | flower | wt | 10.31 | HC |
| SRR8060835 | leaf | wild_type | 4.07 | HC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 5.06 | HC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 5.94 | HC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 9.03 | HC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 10.62 | HC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 10.49 | HC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 13.48 | HC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 10.99 | HC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 11.65 | HC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 8.51 | HC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 14.03 | HC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 11.38 | HC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 15.50 | HC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 7.89 | HC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 6.32 | HC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 9.54 | HC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 9.65 | HC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 12.19 | HC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 8.17 | HC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 10.61 | HC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 12.04 | HC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 10.99 | HC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 12.59 | HC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 11.44 | HC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 9.84 | HC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 9.72 | HC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 12.56 | HC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 7.26 | HC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 6.92 | HC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 7.33 | HC |
| SRR3209778 | leaf | Drought;Long_Day | 4.69 | HC |
| SRR8611900 | leaf | Non-inoculated | 4.12 | HC |
| SRR8611901 | leaf | Non-inoculated | 6.69 | HC |
| SRR8611902 | leaf | Non-inoculated | 6.17 | HC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 4.49 | HC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 7.50 | HC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 5.80 | HC |
| SRR6216698 | leaf | nontransgenic rice plant | 8.16 | HC |
| SRR6216699 | leaf | nontransgenic rice plant | 7.84 | HC |
| SRR1213692 | leaf | wt | 7.17 | HC |
| SRR1213693 | leaf | wt | 10.14 | HC |
| SRR6502085 | leaf | 100 mM NaCl | 4.53 | HC |
| SRR6502090 | leaf | control | 5.65 | HC |
| SRR5856927 | leaf | control | 6.35 | HC |
| SRR5856928 | leaf | control | 6.56 | HC |
| SRR5856929 | leaf | control | 6.44 | HC |
| SRR5856930 | leaf | salt | 4.75 | HC |
| SRR5856931 | leaf | salt | 4.77 | HC |
| SRR5856932 | leaf | salt | 3.82 | HC |
| SRR5856933 | leaf | control | 8.05 | HC |
| SRR5856934 | leaf | control | 7.24 | HC |
| SRR5856935 | leaf | control | 4.10 | HC |
| SRR5856936 | leaf | salt | 3.86 | HC |
| SRR5856937 | leaf | salt | 5.33 | HC |
| SRR5856938 | leaf | salt | 5.45 | HC |
| SRR6168973 | leaf | none (control) | 6.75 | HC |
| SRR6168974 | leaf | none (control) | 6.89 | HC |
| SRR6168975 | leaf | none (control) | 7.30 | HC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 11.24 | HC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 4.09 | HC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 7.46 | HC |
| SRR6168981 | leaf | none (control) | 4.54 | HC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 4.72 | HC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 3.74 | HC |
| SRR8582893 | panicle | PM | 4.83 | HC |
| SRR5110429 | panicle | Dawn | 12.74 | HC |
| SRR5110431 | panicle | Dawn | 9.52 | HC |
| SRR5110432 | panicle | Dawn | 11.39 | HC |
| SRR4947496 | root | control | 14.16 | HC |
| SRR5110433 | panicle | Dawn + 3.5h | 10.91 | HC |
| SRR5110434 | panicle | Dawn + 3.5h | 9.97 | HC |
| SRR5110435 | panicle | Dawn + 3.5h | 7.17 | HC |
| SRR5110436 | panicle | Dawn + 3.5h | 9.21 | HC |
| SRR5110437 | panicle | Dawn + 7h | 15.36 | HC |
| SRR5110439 | panicle | Dawn + 7h | 10.02 | HC |
| SRR5110440 | panicle | Dawn + 7h | 15.68 | HC |
| SRR5110441 | panicle | Dawn + 10.5h | 12.89 | HC |
| SRR5110442 | panicle | Dawn + 10.5h | 15.10 | HC |
| SRR5110443 | panicle | Dawn + 10.5h | 18.07 | HC |
| SRR5110444 | panicle | Dawn + 10.5h | 19.96 | HC |
| SRR5110445 | panicle | Dusk | 11.34 | HC |
| SRR5110446 | panicle | Dusk | 14.24 | HC |
| SRR5110447 | panicle | Dusk | 18.66 | HC |
| SRR5110448 | panicle | Dusk | 17.49 | HC |
| SRR5110449 | panicle | Dawn + 14h | 15.03 | HC |
| SRR5110451 | panicle | Dawn + 14h | 13.31 | HC |
| SRR5110452 | panicle | Dawn + 14h | 10.61 | HC |
| SRR5110453 | panicle | Dawn + 17.5h | 9.83 | HC |
| SRR5110454 | panicle | Dawn + 17.5h | 8.01 | HC |
| SRR5110455 | panicle | Dawn + 17.5h | 9.41 | HC |
| SRR5110457 | panicle | Dawn + 21h | 10.09 | HC |
| SRR5110458 | panicle | Dawn + 21h | 7.01 | HC |
| SRR5110460 | panicle | Dawn + 21h | 8.24 | HC |
| SRR1213696 | endosprem | wt(milk grains) | 6.12 | HC |
| SRR1213697 | endosprem | wt(mature seeds) | 5.63 | HC |
| SRR1633182 | panicle | WT | 7.25 | HC |
| SRR5278374 | pistil | "Balilla,S1" | 5.65 | HC |
| SRR5278375 | pistil | "Balilla,S1" | 5.86 | HC |
| SRR5278376 | pistil | "Balilla,S2" | 6.78 | HC |
| SRR5278377 | pistil | "Balilla,S2" | 7.15 | HC |
| SRR5278378 | pistil | "Balilla,S3" | 7.20 | HC |
| SRR5278379 | pistil | "Balilla,S3" | 7.14 | HC |
| SRR5126147 | root | "mock,1_day" | 11.07 | HC |
| SRR5126148 | root | "mock,1_day" | 14.57 | HC |
| SRR5126149 | root | "mock,1_day" | 11.34 | HC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 6.81 | HC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 10.27 | HC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 13.73 | HC |
| SRR5126153 | root | "mock,7_days" | 12.98 | HC |
| SRR5126155 | root | "mock,7_days" | 9.57 | HC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 12.71 | HC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 7.43 | HC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 10.28 | HC |
| SRR5126165 | root | "mock,14_days" | 9.73 | HC |
| SRR5126167 | root | "mock,14_days" | 8.32 | HC |
| SRR5126169 | root | "mock,14_days" | 8.53 | HC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 12.07 | HC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 8.26 | HC |
| SRR3472897 | root | nontransgenic_rice_plant | 18.54 | HC |
| SRR3472900 | root | nontransgenic_rice_plant | 16.90 | HC |
| SRR1213694 | root | wt | 7.54 | HC |
| SRR1213695 | root | wt | 5.58 | HC |
| SRR4947478 | root | control | 16.27 | HC |
| SRR4947479 | root | control | 17.64 | HC |
| SRR4947481 | root | control | 19.09 | HC |
| SRR4947482 | root | Al | 11.83 | HC |
| SRR4947484 | root | Al | 17.95 | HC |
| SRR4947485 | root | Al | 13.08 | HC |
| SRR4947487 | root | control | 13.85 | HC |
| SRR4947488 | root | control | 12.81 | HC |
| SRR4947490 | root | Al | 13.45 | HC |
| SRR4947491 | root | Al | 16.66 | HC |
| SRR4947492 | root | Al | 14.38 | HC |
| SRR4947494 | root | control | 16.78 | HC |
| SRR4947497 | root | control | 18.26 | HC |
| SRR4947498 | root | Al | 24.37 | HC |
| SRR4947499 | root | Al | 17.67 | HC |
| SRR4947501 | root | Al | 25.52 | HC |
| SRR4947502 | root | control | 15.62 | HC |
| SRR4947503 | root | control | 14.78 | HC |
| SRR4947504 | root | control | 15.52 | HC |
| SRR4947506 | root | Al | 13.32 | HC |
| SRR4947507 | root | Al | 21.18 | HC |
| SRR4947508 | root | Al | 15.47 | HC |
| SRR4947509 | root | Al | 24.24 | HC |
| SRR6502091 | root | 100 mM NaCl | 10.96 | HC |
| SRR6502095 | root | control | 11.83 | HC |
| SRR6502104 | root | 100 mM NaCl | 7.44 | HC |
| SRR6502106 | root | control | 11.18 | HC |
| SRR6502107 | root | control | 6.61 | HC |
| SRR1740435 | root_differentiation_zone | wt | 13.33 | HC |
| SRR1740436 | root_differentiation_zone | wt | 20.23 | HC |
| SRR1740432 | root_elongation_zone | wt | 23.74 | HC |
| SRR1740433 | root_elongation_zone | wt | 23.64 | HC |
| SRR1740428 | root_meristematic_zone | wt | 26.03 | HC |
| SRR1740429 | root_meristematic_zone | wt | 35.83 | HC |
| SRR1740430 | root_meristematic_zone | wt | 42.68 | HC |
| SRR6441555 | seedling | wild_type | 3.59 | HC |
| SRR2154086 | seedling | wt | 15.15 | HC |
| SRR2154082 | seedling | wt | 12.47 | HC |
| SRR2154083 | seedling | wt | 9.19 | HC |
| SRR2154084 | seedling | wt | 10.39 | HC |
| SRR2154085 | seedling | wt | 11.80 | HC |
| SRR2154087 | seedling | wt | 13.55 | HC |
| SRR3098743 | seedling | wt | 2.92 | HC |
| SRR2857719 | seedling | drought_stress_0h | 5.31 | HC |
| SRR358791 | seedling | wt | 9.31 | HC |
| SRR358794 | seedling | wt | 17.50 | HC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 5.26 | HC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 3.94 | HC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 3.52 | HC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 5.71 | HC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 4.25 | HC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 4.57 | HC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 2.93 | HC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 4.59 | HC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 17.32 | HC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 15.54 | HC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 21.49 | HC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 24.76 | HC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 14.79 | HC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 24.10 | HC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 21.95 | HC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 16.91 | HC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 17.96 | HC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 16.88 | HC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 12.67 | HC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 17.50 | HC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 18.48 | HC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 14.05 | HC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 25.32 | HC |
| SRR1617549 | shoot_apical_meristem | no collect | 20.77 | HC |
| SRR1617554 | shoot_apical_meristem | no collect | 30.39 | HC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 23.98 | HC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 26.70 | HC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 29.68 | HC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 29.68 | HC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 28.40 | HC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 30.17 | HC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 20.40 | HC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 13.53 | HC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 16.76 | HC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 6.50 | HC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 9.04 | HC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 12.07 | HC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 7.79 | HC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 11.08 | HC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 13.47 | HC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 9.44 | HC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 7.98 | HC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 8.27 | HC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 7.86 | HC |