| SRR4457263 | 2nd_leaf | DAH36 | 5.18 | HC |
| SRR4457265 | 2nd_leaf | DAH44 | 6.63 | HC |
| SRR5560727 | caryopsis | wild_type | 17.38 | HC |
| SRR5560728 | caryopsis | wild_type | 19.67 | HC |
| SRR5560729 | caryopsis | wild_type | 17.45 | HC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 6.36 | HC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 4.65 | HC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 14.78 | HC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 10.60 | HC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 5.24 | HC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 4.56 | HC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 4.41 | HC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 6.25 | HC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 5.74 | HC |
| SRR2338867 | endosprem | control | 2.45 | HC |
| SRR8060835 | leaf | wild_type | 6.06 | HC |
| SRR8060836 | leaf | wild_type | 4.80 | HC |
| SRR8060837 | leaf | wild_type | 8.97 | HC |
| SRR8240824 | leaf | wild_type | 7.47 | HC |
| SRR8240825 | leaf | wild_type | 4.66 | HC |
| SRR8240826 | leaf | wild_type | 3.39 | HC |
| SRR8240819 | leaf | wild_type | 2.66 | HC |
| SRR8240820 | leaf | wild_type | 3.20 | HC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 10.80 | HC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 10.81 | HC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 11.06 | HC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 8.13 | HC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 6.22 | HC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 6.90 | HC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 5.60 | HC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 4.96 | HC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 9.72 | HC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 7.18 | HC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 8.93 | HC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 8.96 | HC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 8.06 | HC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 7.11 | HC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 6.38 | HC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 4.68 | HC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 5.78 | HC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 6.96 | HC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 5.57 | HC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 5.68 | HC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 6.13 | HC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 8.62 | HC |
| SRR1761788 | leaf | "wild_type,drought,2" | 8.93 | HC |
| SRR1761789 | leaf | "wild_type,drought,2" | 11.77 | HC |
| SRR1761791 | leaf | "wild_type,control,2" | 8.71 | HC |
| SRR1761780 | leaf | "wild_type,drought,1" | 8.93 | HC |
| SRR1761781 | leaf | "wild_type,drought,1" | 11.77 | HC |
| SRR1761783 | leaf | "wild_type,control,1" | 8.71 | HC |
| SRR1761528 | leaf | drought | 8.93 | HC |
| SRR1761529 | leaf | drought | 11.78 | HC |
| SRR1761531 | leaf | control | 8.71 | HC |
| SRR504365 | leaf | wt | 8.06 | HC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 7.04 | HC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 11.15 | HC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 6.45 | HC |
| SRR6417967 | leaf | H2O_control | 4.04 | HC |
| SRR6417968 | leaf | H2O_control | 7.64 | HC |
| SRR6417969 | leaf | H2O_control | 6.36 | HC |
| SRR3209770 | leaf | Watered;Long_Day | 3.71 | HC |
| SRR3209771 | leaf | Drought;Long_Day | 9.59 | HC |
| SRR3209772 | leaf | Drought;Long_Day | 6.98 | HC |
| SRR3209773 | leaf | Watered;Short_Day | 8.30 | HC |
| SRR3209774 | leaf | Watered;Short_Day | 7.80 | HC |
| SRR3209775 | leaf | Drought;Short_Day | 11.65 | HC |
| SRR3209776 | leaf | Drought;Short_Day | 7.86 | HC |
| SRR3209777 | leaf | Watered;Long_Day | 4.42 | HC |
| SRR3209778 | leaf | Drought;Long_Day | 7.79 | HC |
| SRR3209779 | leaf | Watered;Short_Day | 6.53 | HC |
| SRR3209780 | leaf | Drought;Short_Day | 9.16 | HC |
| SRR8611900 | leaf | Non-inoculated | 27.99 | HC |
| SRR8611901 | leaf | Non-inoculated | 28.84 | HC |
| SRR8611902 | leaf | Non-inoculated | 31.75 | HC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 66.74 | HC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 64.05 | HC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 68.46 | HC |
| SRR6216698 | leaf | nontransgenic rice plant | 8.03 | HC |
| SRR6216699 | leaf | nontransgenic rice plant | 10.78 | HC |
| SRR1213692 | leaf | wt | 5.60 | HC |
| SRR1213693 | leaf | wt | 4.78 | HC |
| SRR6502085 | leaf | 100 mM NaCl | 9.41 | HC |
| SRR6502086 | leaf | 100 mM NaCl | 10.91 | HC |
| SRR6502087 | leaf | 100 mM NaCl | 13.23 | HC |
| SRR6502088 | leaf | control | 7.25 | HC |
| SRR6502089 | leaf | control | 6.85 | HC |
| SRR6502090 | leaf | control | 6.66 | HC |
| SRR6502097 | leaf | 100 mM NaCl | 9.79 | HC |
| SRR6502098 | leaf | 100 mM NaCl | 10.90 | HC |
| SRR6502099 | leaf | 100 mM NaCl | 15.44 | HC |
| SRR6502100 | leaf | control | 10.17 | HC |
| SRR6502101 | leaf | control | 5.91 | HC |
| SRR6502102 | leaf | control | 7.97 | HC |
| SRR5856927 | leaf | control | 3.40 | HC |
| SRR5856928 | leaf | control | 2.92 | HC |
| SRR5856929 | leaf | control | 2.37 | HC |
| SRR5856933 | leaf | control | 7.89 | HC |
| SRR5856934 | leaf | control | 7.40 | HC |
| SRR5856935 | leaf | control | 5.30 | HC |
| SRR5856936 | leaf | salt | 3.16 | HC |
| SRR5856937 | leaf | salt | 2.14 | HC |
| SRR5856938 | leaf | salt | 4.62 | HC |
| SRR6168973 | leaf | none (control) | 50.98 | HC |
| SRR6168974 | leaf | none (control) | 50.39 | HC |
| SRR6168975 | leaf | none (control) | 86.43 | HC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 13.56 | HC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 3.30 | HC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 13.07 | HC |
| SRR6168979 | leaf | none (control) | 14.56 | HC |
| SRR6168980 | leaf | none (control) | 10.84 | HC |
| SRR6168981 | leaf | none (control) | 10.19 | HC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 5.76 | HC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 3.34 | HC |
| SRR8582888 | panicle | AM | 9.71 | HC |
| SRR8582889 | panicle | AM | 13.57 | HC |
| SRR8582890 | panicle | AM | 3.44 | HC |
| SRR8582891 | panicle | PM | 21.71 | HC |
| SRR8582892 | panicle | PM | 14.19 | HC |
| SRR8582893 | panicle | PM | 55.78 | HC |
| SRR4947496 | root | control | 15.63 | HC |
| SRR1213697 | endosprem | wt(mature seeds) | 3.77 | HC |
| SRR5278374 | pistil | "Balilla,S1" | 4.24 | HC |
| SRR5278375 | pistil | "Balilla,S1" | 5.32 | HC |
| SRR5278376 | pistil | "Balilla,S2" | 7.00 | HC |
| SRR5278377 | pistil | "Balilla,S2" | 5.70 | HC |
| SRR5278378 | pistil | "Balilla,S3" | 16.80 | HC |
| SRR5278379 | pistil | "Balilla,S3" | 19.88 | HC |
| SRR5126147 | root | "mock,1_day" | 7.66 | HC |
| SRR5126148 | root | "mock,1_day" | 7.93 | HC |
| SRR5126149 | root | "mock,1_day" | 10.93 | HC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 9.25 | HC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 11.34 | HC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 6.18 | HC |
| SRR5126155 | root | "mock,7_days" | 9.61 | HC |
| SRR5126157 | root | "mock,7_days" | 9.49 | HC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 8.42 | HC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 5.82 | HC |
| SRR5126165 | root | "mock,14_days" | 4.88 | HC |
| SRR5126167 | root | "mock,14_days" | 5.58 | HC |
| SRR5126169 | root | "mock,14_days" | 10.34 | HC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 8.74 | HC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 6.09 | HC |
| SRR3472897 | root | nontransgenic_rice_plant | 3.78 | HC |
| SRR3472900 | root | nontransgenic_rice_plant | 8.75 | HC |
| SRR4947479 | root | control | 5.30 | HC |
| SRR4947480 | root | control | 11.88 | HC |
| SRR4947481 | root | control | 14.68 | HC |
| SRR4947483 | root | Al | 4.60 | HC |
| SRR4947484 | root | Al | 8.44 | HC |
| SRR4947485 | root | Al | 10.10 | HC |
| SRR4947487 | root | control | 4.67 | HC |
| SRR4947488 | root | control | 12.41 | HC |
| SRR4947489 | root | control | 16.27 | HC |
| SRR4947492 | root | Al | 9.57 | HC |
| SRR4947493 | root | Al | 11.77 | HC |
| SRR4947497 | root | control | 9.12 | HC |
| SRR4947500 | root | Al | 9.30 | HC |
| SRR4947501 | root | Al | 6.38 | HC |
| SRR4947503 | root | control | 7.58 | HC |
| SRR4947504 | root | control | 15.25 | HC |
| SRR4947505 | root | control | 12.15 | HC |
| SRR4947508 | root | Al | 9.51 | HC |
| SRR4947509 | root | Al | 9.87 | HC |
| SRR6502091 | root | 100 mM NaCl | 7.38 | HC |
| SRR6502092 | root | 100 mM NaCl | 11.38 | HC |
| SRR6502093 | root | 100 mM NaCl | 8.02 | HC |
| SRR6502094 | root | control | 6.80 | HC |
| SRR6502095 | root | control | 7.95 | HC |
| SRR6502103 | root | 100 mM NaCl | 8.39 | HC |
| SRR6502104 | root | 100 mM NaCl | 7.64 | HC |
| SRR6502105 | root | 100 mM NaCl | 17.31 | HC |
| SRR6502106 | root | control | 6.17 | HC |
| SRR6502107 | root | control | 4.24 | HC |
| SRR6502108 | root | control | 6.17 | HC |
| SRR1740434 | root_differentiation_zone | wt | 4.94 | HC |
| SRR1740436 | root_differentiation_zone | wt | 3.90 | HC |
| SRR1740429 | root_meristematic_zone | wt | 4.38 | HC |
| SRR1740430 | root_meristematic_zone | wt | 5.22 | HC |
| SRR6441554 | seedling | wild_type | 14.79 | HC |
| SRR6441555 | seedling | wild_type | 16.37 | HC |
| SRR2154086 | seedling | wt | 6.99 | HC |
| SRR2154085 | seedling | wt | 7.14 | HC |
| SRR2154087 | seedling | wt | 6.62 | HC |
| SRR3098741 | seedling | wt | 8.19 | HC |
| SRR3098742 | seedling | wt | 8.18 | HC |
| SRR3098743 | seedling | wt | 8.98 | HC |
| SRR2857719 | seedling | drought_stress_0h | 5.73 | HC |
| SRR2857721 | seedling | drought_stress_6h | 5.12 | HC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 6.25 | HC |
| SRR1944583 | seedling | no_treatment | 12.27 | HC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 5.80 | HC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 10.46 | HC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 18.39 | HC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 10.62 | HC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 11.10 | HC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 11.78 | HC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 9.72 | HC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 6.19 | HC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 8.19 | HC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 7.18 | HC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 6.79 | HC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 6.53 | HC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 5.70 | HC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 4.83 | HC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 6.92 | HC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 9.91 | HC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 4.75 | HC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 6.45 | HC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 11.65 | HC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 5.25 | HC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 3.94 | HC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 6.25 | HC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 5.16 | HC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 9.45 | HC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 8.82 | HC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 6.21 | HC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 7.74 | HC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 12.21 | HC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 17.71 | HC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 6.10 | HC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 4.74 | HC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 5.22 | HC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 4.30 | HC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 8.73 | HC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 4.54 | HC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 4.07 | HC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 21.85 | HC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 17.39 | HC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 12.01 | HC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 14.21 | HC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 8.75 | HC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 12.64 | HC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 13.27 | HC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 11.55 | HC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 9.13 | HC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 11.77 | HC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 13.33 | HC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 8.68 | HC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 9.01 | HC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 9.47 | HC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 15.46 | HC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 11.52 | HC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 7.53 | HC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 9.48 | HC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 12.72 | HC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 11.27 | HC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 9.76 | HC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 8.67 | HC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 11.45 | HC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 14.81 | HC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 11.53 | HC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 6.02 | HC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 10.40 | HC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 7.81 | HC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 7.78 | HC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 10.09 | HC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 23.72 | HC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 4.43 | HC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 3.69 | HC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 3.80 | HC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 4.49 | HC |