| SRR358795 | callus | wt | 41.56 | HC |
| SRR358796 | callus | wt | 40.05 | HC |
| SRR358797 | callus | wt | 40.80 | HC |
| SRR358798 | callus | wt | 29.73 | HC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 42.27 | HC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 50.81 | HC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 97.31 | HC |
| SRR4947495 | root | control | 74.96 | HC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 31.67 | HC |
| SRR7265400 | coleoptile | 2dA | 125.80 | HC |
| SRR7265401 | coleoptile | 2dA | 127.06 | HC |
| SRR7265402 | coleoptile | 2dA | 128.42 | HC |
| SRR7265403 | coleoptile | 2dN | 12.06 | HC |
| SRR7265404 | coleoptile | 2dN | 10.19 | HC |
| SRR7265405 | coleoptile | 2dN | 11.57 | HC |
| SRR7265406 | coleoptile | 3dA | 23.33 | HC |
| SRR7265407 | coleoptile | 3dA | 20.73 | HC |
| SRR7265408 | coleoptile | 3dA | 16.75 | HC |
| SRR7265409 | coleoptile | 3dN | 7.76 | HC |
| SRR7265410 | coleoptile | 3dN | 8.31 | HC |
| SRR7265411 | coleoptile | 3dN | 7.53 | HC |
| SRR7265413 | coleoptile | 4dA | 36.66 | HC |
| SRR7265414 | coleoptile | 4dA | 14.67 | HC |
| SRR7265415 | coleoptile | 4dN | 13.52 | HC |
| SRR7265416 | coleoptile | 4dN | 12.45 | HC |
| SRR7265417 | coleoptile | 4dN | 14.72 | HC |
| SRR7265418 | coleoptile | 3dN1dA | 8.69 | HC |
| SRR7265419 | coleoptile | 3dN1dA | 12.93 | HC |
| SRR7265420 | coleoptile | 3dN1dA | 8.79 | HC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 65.62 | HC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 106.09 | HC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 35.58 | HC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 12.21 | HC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 110.99 | HC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 35.65 | HC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 43.89 | HC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 13.00 | HC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 45.11 | HC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 95.41 | HC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 219.63 | HC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 95.03 | HC |
| SRR7265388 | embryo | 12hA | 10.16 | HC |
| SRR7265389 | embryo | 12hA | 8.77 | HC |
| SRR7265390 | embryo | 12hA | 9.18 | HC |
| SRR7265394 | embryo | 24hA | 132.85 | HC |
| SRR7265395 | embryo | 24hA | 145.09 | HC |
| SRR7265396 | embryo | 24hA | 141.87 | HC |
| SRR2338867 | endosprem | control | 4.70 | HC |
| SRR1213690 | flower | wt(flower buds) | 35.75 | HC |
| SRR1213691 | flower | wt | 4.60 | HC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 101.72 | HC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 37.77 | HC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 109.75 | HC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 85.43 | HC |
| SRR6216698 | leaf | nontransgenic rice plant | 76.17 | HC |
| SRR6216699 | leaf | nontransgenic rice plant | 130.72 | HC |
| SRR5856927 | leaf | control | 10.82 | HC |
| SRR5856928 | leaf | control | 10.88 | HC |
| SRR5856929 | leaf | control | 11.18 | HC |
| SRR5856930 | leaf | salt | 5.32 | HC |
| SRR5856931 | leaf | salt | 2.18 | HC |
| SRR5856932 | leaf | salt | 5.45 | HC |
| SRR5856933 | leaf | control | 16.36 | HC |
| SRR5856934 | leaf | control | 13.20 | HC |
| SRR5856935 | leaf | control | 16.95 | HC |
| SRR5856936 | leaf | salt | 3.63 | HC |
| SRR5856937 | leaf | salt | 3.68 | HC |
| SRR5856938 | leaf | salt | 7.88 | HC |
| SRR6168973 | leaf | none (control) | 35.33 | HC |
| SRR6168974 | leaf | none (control) | 40.25 | HC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 116.54 | HC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 43.09 | HC |
| SRR5110429 | panicle | Dawn | 118.17 | HC |
| SRR5110430 | panicle | Dawn | 27.96 | HC |
| SRR5110431 | panicle | Dawn | 59.08 | HC |
| SRR5110432 | panicle | Dawn | 97.07 | HC |
| SRR4947496 | root | control | 47.71 | HC |
| SRR5110433 | panicle | Dawn + 3.5h | 109.75 | HC |
| SRR5110434 | panicle | Dawn + 3.5h | 50.19 | HC |
| SRR5110435 | panicle | Dawn + 3.5h | 35.64 | HC |
| SRR5110436 | panicle | Dawn + 3.5h | 76.85 | HC |
| SRR5110437 | panicle | Dawn + 7h | 58.87 | HC |
| SRR5110438 | panicle | Dawn + 7h | 89.84 | HC |
| SRR5110439 | panicle | Dawn + 7h | 57.22 | HC |
| SRR5110440 | panicle | Dawn + 7h | 93.86 | HC |
| SRR5110441 | panicle | Dawn + 10.5h | 14.24 | HC |
| SRR5110442 | panicle | Dawn + 10.5h | 62.72 | HC |
| SRR5110443 | panicle | Dawn + 10.5h | 84.34 | HC |
| SRR5110444 | panicle | Dawn + 10.5h | 60.79 | HC |
| SRR5110445 | panicle | Dusk | 24.82 | HC |
| SRR5110446 | panicle | Dusk | 127.13 | HC |
| SRR5110447 | panicle | Dusk | 148.50 | HC |
| SRR5110448 | panicle | Dusk | 102.77 | HC |
| SRR5110449 | panicle | Dawn + 14h | 13.95 | HC |
| SRR5110450 | panicle | Dawn + 14h | 38.32 | HC |
| SRR5110451 | panicle | Dawn + 14h | 74.11 | HC |
| SRR5110452 | panicle | Dawn + 14h | 95.16 | HC |
| SRR5110453 | panicle | Dawn + 17.5h | 80.83 | HC |
| SRR5110454 | panicle | Dawn + 17.5h | 83.43 | HC |
| SRR5110455 | panicle | Dawn + 17.5h | 64.83 | HC |
| SRR5110456 | panicle | Dawn + 17.5h | 136.78 | HC |
| SRR5110457 | panicle | Dawn + 21h | 90.54 | HC |
| SRR5110458 | panicle | Dawn + 21h | 76.80 | HC |
| SRR5110459 | panicle | Dawn + 21h | 128.61 | HC |
| SRR5110460 | panicle | Dawn + 21h | 36.74 | HC |
| SRR1213696 | endosprem | wt(milk grains) | 7.33 | HC |
| SRR1633182 | panicle | WT | 64.63 | HC |
| SRR1633185 | panicle | WT | 109.37 | HC |
| SRR5278374 | pistil | "Balilla,S1" | 7.79 | HC |
| SRR5278375 | pistil | "Balilla,S1" | 11.46 | HC |
| SRR5278376 | pistil | "Balilla,S2" | 27.84 | HC |
| SRR5278377 | pistil | "Balilla,S2" | 27.13 | HC |
| SRR5278378 | pistil | "Balilla,S3" | 23.34 | HC |
| SRR5278379 | pistil | "Balilla,S3" | 62.18 | HC |
| SRR5126147 | root | "mock,1_day" | 121.79 | HC |
| SRR5126148 | root | "mock,1_day" | 158.83 | HC |
| SRR5126149 | root | "mock,1_day" | 67.58 | HC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 72.48 | HC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 53.61 | HC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 86.52 | HC |
| SRR5126153 | root | "mock,7_days" | 74.41 | HC |
| SRR5126155 | root | "mock,7_days" | 81.75 | HC |
| SRR5126157 | root | "mock,7_days" | 36.14 | HC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 42.53 | HC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 17.97 | HC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 63.72 | HC |
| SRR5126165 | root | "mock,14_days" | 52.41 | HC |
| SRR5126167 | root | "mock,14_days" | 33.39 | HC |
| SRR5126169 | root | "mock,14_days" | 61.05 | HC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 20.39 | HC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 23.24 | HC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 10.32 | HC |
| SRR3472897 | root | nontransgenic_rice_plant | 34.77 | HC |
| SRR3472900 | root | nontransgenic_rice_plant | 14.31 | HC |
| SRR1213694 | root | wt | 7.38 | HC |
| SRR4947478 | root | control | 42.76 | HC |
| SRR4947479 | root | control | 48.10 | HC |
| SRR4947480 | root | control | 41.98 | HC |
| SRR4947481 | root | control | 41.98 | HC |
| SRR4947482 | root | Al | 20.04 | HC |
| SRR4947483 | root | Al | 37.20 | HC |
| SRR4947484 | root | Al | 43.86 | HC |
| SRR4947485 | root | Al | 46.30 | HC |
| SRR4947487 | root | control | 51.55 | HC |
| SRR4947488 | root | control | 52.58 | HC |
| SRR4947489 | root | control | 59.31 | HC |
| SRR4947490 | root | Al | 48.57 | HC |
| SRR4947491 | root | Al | 78.69 | HC |
| SRR4947492 | root | Al | 39.22 | HC |
| SRR4947493 | root | Al | 45.68 | HC |
| SRR4947494 | root | control | 44.34 | HC |
| SRR4947497 | root | control | 64.62 | HC |
| SRR4947498 | root | Al | 87.92 | HC |
| SRR4947499 | root | Al | 65.36 | HC |
| SRR4947500 | root | Al | 50.18 | HC |
| SRR4947501 | root | Al | 60.96 | HC |
| SRR4947502 | root | control | 55.22 | HC |
| SRR4947503 | root | control | 35.19 | HC |
| SRR4947504 | root | control | 36.55 | HC |
| SRR4947505 | root | control | 42.79 | HC |
| SRR4947506 | root | Al | 32.20 | HC |
| SRR4947507 | root | Al | 59.05 | HC |
| SRR4947508 | root | Al | 31.28 | HC |
| SRR4947509 | root | Al | 30.13 | HC |
| SRR6502091 | root | 100 mM NaCl | 28.31 | HC |
| SRR6502092 | root | 100 mM NaCl | 38.37 | HC |
| SRR6502093 | root | 100 mM NaCl | 21.46 | HC |
| SRR6502094 | root | control | 38.31 | HC |
| SRR6502095 | root | control | 41.24 | HC |
| SRR6502096 | root | control | 36.45 | HC |
| SRR6502103 | root | 100 mM NaCl | 33.67 | HC |
| SRR6502104 | root | 100 mM NaCl | 29.78 | HC |
| SRR6502105 | root | 100 mM NaCl | 46.47 | HC |
| SRR6502106 | root | control | 33.77 | HC |
| SRR6502107 | root | control | 31.72 | HC |
| SRR6502108 | root | control | 47.32 | HC |
| SRR1740434 | root_differentiation_zone | wt | 30.02 | HC |
| SRR1740435 | root_differentiation_zone | wt | 17.83 | HC |
| SRR1740436 | root_differentiation_zone | wt | 4.70 | HC |
| SRR1740431 | root_elongation_zone | wt | 90.87 | HC |
| SRR1740432 | root_elongation_zone | wt | 170.61 | HC |
| SRR1740433 | root_elongation_zone | wt | 162.90 | HC |
| SRR1740428 | root_meristematic_zone | wt | 166.21 | HC |
| SRR1740429 | root_meristematic_zone | wt | 211.34 | HC |
| SRR1740430 | root_meristematic_zone | wt | 274.68 | HC |
| SRR6441554 | seedling | wild_type | 11.75 | HC |
| SRR6441555 | seedling | wild_type | 9.06 | HC |
| SRR2154086 | seedling | wt | 52.85 | HC |
| SRR2154082 | seedling | wt | 50.24 | HC |
| SRR2154083 | seedling | wt | 49.03 | HC |
| SRR2154084 | seedling | wt | 57.96 | HC |
| SRR2154085 | seedling | wt | 30.43 | HC |
| SRR2154087 | seedling | wt | 44.62 | HC |
| SRR3098743 | seedling | wt | 4.47 | HC |
| SRR2857720 | seedling | drought_stress_1h | 11.09 | HC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 35.81 | HC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 21.81 | HC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 10.98 | HC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 19.08 | HC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 19.27 | HC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 17.60 | HC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 16.94 | HC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 7.22 | HC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 16.06 | HC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 21.48 | HC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 23.66 | HC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 9.93 | HC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 5.51 | HC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 6.16 | HC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 10.98 | HC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 9.42 | HC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 8.95 | HC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 16.39 | HC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 6.92 | HC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 8.80 | HC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 7.38 | HC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 634.52 | HC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 732.64 | HC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 668.67 | HC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 339.06 | HC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 504.54 | HC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 415.31 | HC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 544.29 | HC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 743.62 | HC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 628.75 | HC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 786.33 | HC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 877.63 | HC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 769.84 | HC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 496.42 | HC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 563.39 | HC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 614.27 | HC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 486.99 | HC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 522.16 | HC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 615.64 | HC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 568.79 | HC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 618.28 | HC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 561.31 | HC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 437.07 | HC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 331.01 | HC |
| SRR1617549 | shoot_apical_meristem | no collect | 72.66 | HC |
| SRR1617550 | shoot_apical_meristem | no collect | 73.94 | HC |
| SRR1617553 | shoot_apical_meristem | no collect | 179.96 | HC |
| SRR1617554 | shoot_apical_meristem | no collect | 209.49 | HC |
| SRR1617556 | shoot_apical_meristem | no collect | 172.62 | HC |
| SRR1617557 | shoot_apical_meristem | no collect | 232.35 | HC |
| SRR1617558 | shoot_apical_meristem | no collect | 203.74 | HC |
| SRR1617559 | shoot_apical_meristem | no collect | 167.56 | HC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 415.99 | HC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 367.58 | HC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 473.88 | HC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 191.84 | HC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 201.07 | HC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 270.30 | HC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 99.81 | HC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 100.62 | HC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 110.10 | HC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 58.72 | HC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 24.52 | HC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 18.16 | HC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 18.92 | HC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 10.25 | HC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 7.30 | HC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 51.84 | HC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 29.77 | HC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 27.69 | HC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 11.53 | HC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 11.87 | HC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 6.11 | HC |