| SRR358795 | callus | wt | 28.94 | HC |
| SRR358796 | callus | wt | 29.45 | HC |
| SRR358797 | callus | wt | 42.12 | HC |
| SRR358798 | callus | wt | 39.12 | HC |
| SRR6320498 | carpel | wt | 7.39 | HC |
| SRR5560728 | caryopsis | wild_type | 5.85 | HC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 8.09 | HC |
| SRR4947495 | root | control | 7.09 | HC |
| SRR7265400 | coleoptile | 2dA | 20.38 | HC |
| SRR7265401 | coleoptile | 2dA | 20.70 | HC |
| SRR7265402 | coleoptile | 2dA | 18.21 | HC |
| SRR7265403 | coleoptile | 2dN | 19.53 | HC |
| SRR7265404 | coleoptile | 2dN | 18.38 | HC |
| SRR7265405 | coleoptile | 2dN | 17.10 | HC |
| SRR7265406 | coleoptile | 3dA | 5.52 | HC |
| SRR7265407 | coleoptile | 3dA | 4.72 | HC |
| SRR7265409 | coleoptile | 3dN | 5.90 | HC |
| SRR7265410 | coleoptile | 3dN | 5.63 | HC |
| SRR7265411 | coleoptile | 3dN | 5.20 | HC |
| SRR7265413 | coleoptile | 4dA | 7.63 | HC |
| SRR7265415 | coleoptile | 4dN | 7.15 | HC |
| SRR7265416 | coleoptile | 4dN | 5.90 | HC |
| SRR7265417 | coleoptile | 4dN | 5.24 | HC |
| SRR7265419 | coleoptile | 3dN1dA | 4.48 | HC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 8.21 | HC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 7.09 | HC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 7.55 | HC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 7.19 | HC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 9.33 | HC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 7.99 | HC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 6.77 | HC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 6.53 | HC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 6.17 | HC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 10.87 | HC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 12.58 | HC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 10.61 | HC |
| SRR7265373 | embryo | dry seed 0 h | 4.18 | HC |
| SRR7265374 | embryo | dry seed 0 h | 5.03 | HC |
| SRR7265375 | embryo | dry seed 0 h | 1.88 | HC |
| SRR7265376 | embryo | 1hA | 3.98 | HC |
| SRR7265377 | embryo | 1hA | 4.18 | HC |
| SRR7265378 | embryo | 1hA | 3.52 | HC |
| SRR7265379 | embryo | 1hN | 4.43 | HC |
| SRR7265381 | embryo | 1hN | 3.96 | HC |
| SRR7265382 | embryo | 3hA | 6.94 | HC |
| SRR7265383 | embryo | 3hA | 5.71 | HC |
| SRR7265384 | embryo | 3hA | 5.06 | HC |
| SRR7265386 | embryo | 3hN | 3.48 | HC |
| SRR7265387 | embryo | 3hN | 3.80 | HC |
| SRR7265388 | embryo | 12hA | 33.39 | HC |
| SRR7265389 | embryo | 12hA | 33.43 | HC |
| SRR7265390 | embryo | 12hA | 31.49 | HC |
| SRR7265391 | embryo | 12hN | 25.65 | HC |
| SRR7265392 | embryo | 12hN | 24.77 | HC |
| SRR7265393 | embryo | 12hN | 24.38 | HC |
| SRR7265394 | embryo | 24hA | 18.08 | HC |
| SRR7265395 | embryo | 24hA | 30.55 | HC |
| SRR7265396 | embryo | 24hA | 22.74 | HC |
| SRR7265397 | embryo | 24hN | 25.80 | HC |
| SRR7265398 | embryo | 24hN | 21.79 | HC |
| SRR7265399 | embryo | 24hN | 19.27 | HC |
| SRR2338867 | endosprem | control | 3.35 | HC |
| SRR2338868 | endosprem | high_temperature | 3.71 | HC |
| SRR2338869 | endosprem | high_temperature | 6.80 | HC |
| SRR4457237 | flag_leaf | DAH20 | 4.48 | HC |
| SRR4457238 | flag_leaf | DAH20 | 4.40 | HC |
| SRR4457239 | flag_leaf | DAH20 | 5.68 | HC |
| SRR4457240 | flag_leaf | DAH28 | 8.71 | HC |
| SRR4457241 | flag_leaf | DAH28 | 13.29 | HC |
| SRR4457242 | flag_leaf | DAH28 | 10.27 | HC |
| SRR4457246 | flag_leaf | DAH44 | 5.03 | HC |
| SRR4457248 | flag_leaf | DAH44 | 6.46 | HC |
| SRR1213690 | flower | wt(flower buds) | 6.51 | HC |
| SRR1213691 | flower | wt | 6.98 | HC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 5.08 | HC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 6.85 | HC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 6.78 | HC |
| SRR3209769 | leaf | Watered;Long_Day | 4.99 | HC |
| SRR3209770 | leaf | Watered;Long_Day | 6.24 | HC |
| SRR6216698 | leaf | nontransgenic rice plant | 6.90 | HC |
| SRR6216699 | leaf | nontransgenic rice plant | 5.98 | HC |
| SRR5856927 | leaf | control | 4.84 | HC |
| SRR5856928 | leaf | control | 4.32 | HC |
| SRR5856929 | leaf | control | 6.40 | HC |
| SRR5856931 | leaf | salt | 2.34 | HC |
| SRR5856932 | leaf | salt | 2.34 | HC |
| SRR5856933 | leaf | control | 8.90 | HC |
| SRR5856934 | leaf | control | 5.75 | HC |
| SRR5856935 | leaf | control | 7.48 | HC |
| SRR5856936 | leaf | salt | 2.11 | HC |
| SRR5856938 | leaf | salt | 3.28 | HC |
| SRR6168979 | leaf | none (control) | 4.14 | HC |
| SRR6168980 | leaf | none (control) | 2.84 | HC |
| SRR6168981 | leaf | none (control) | 7.42 | HC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 5.68 | HC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 6.12 | HC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 10.69 | HC |
| SRR5110429 | panicle | Dawn | 9.48 | HC |
| SRR5110431 | panicle | Dawn | 4.40 | HC |
| SRR5110432 | panicle | Dawn | 5.45 | HC |
| SRR5110433 | panicle | Dawn + 3.5h | 5.56 | HC |
| SRR5110436 | panicle | Dawn + 3.5h | 6.08 | HC |
| SRR5110438 | panicle | Dawn + 7h | 4.52 | HC |
| SRR5110440 | panicle | Dawn + 7h | 7.36 | HC |
| SRR5110442 | panicle | Dawn + 10.5h | 4.68 | HC |
| SRR5110443 | panicle | Dawn + 10.5h | 4.29 | HC |
| SRR5110446 | panicle | Dusk | 9.22 | HC |
| SRR5110447 | panicle | Dusk | 8.60 | HC |
| SRR5110448 | panicle | Dusk | 11.46 | HC |
| SRR5110450 | panicle | Dawn + 14h | 4.73 | HC |
| SRR5110451 | panicle | Dawn + 14h | 4.50 | HC |
| SRR5110452 | panicle | Dawn + 14h | 9.99 | HC |
| SRR5110453 | panicle | Dawn + 17.5h | 6.34 | HC |
| SRR5110454 | panicle | Dawn + 17.5h | 4.55 | HC |
| SRR5110456 | panicle | Dawn + 17.5h | 11.13 | HC |
| SRR5110457 | panicle | Dawn + 21h | 5.13 | HC |
| SRR5110458 | panicle | Dawn + 21h | 5.11 | HC |
| SRR5110459 | panicle | Dawn + 21h | 8.82 | HC |
| SRR5110460 | panicle | Dawn + 21h | 6.50 | HC |
| SRR1213696 | endosprem | wt(milk grains) | 2.92 | HC |
| SRR1633182 | panicle | WT | 53.24 | HC |
| SRR1633185 | panicle | WT | 68.53 | HC |
| SRR5278374 | pistil | "Balilla,S1" | 4.98 | HC |
| SRR5278375 | pistil | "Balilla,S1" | 6.08 | HC |
| SRR5278376 | pistil | "Balilla,S2" | 6.97 | HC |
| SRR5278377 | pistil | "Balilla,S2" | 6.15 | HC |
| SRR5278378 | pistil | "Balilla,S3" | 13.90 | HC |
| SRR5278379 | pistil | "Balilla,S3" | 9.93 | HC |
| SRR5126147 | root | "mock,1_day" | 5.37 | HC |
| SRR5126148 | root | "mock,1_day" | 5.63 | HC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 12.46 | HC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 10.07 | HC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 13.55 | HC |
| SRR5126153 | root | "mock,7_days" | 8.57 | HC |
| SRR5126155 | root | "mock,7_days" | 7.11 | HC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 13.02 | HC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 11.85 | HC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 12.72 | HC |
| SRR5126165 | root | "mock,14_days" | 7.56 | HC |
| SRR5126167 | root | "mock,14_days" | 7.09 | HC |
| SRR5126169 | root | "mock,14_days" | 5.66 | HC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 15.98 | HC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 12.66 | HC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 14.12 | HC |
| SRR3472897 | root | nontransgenic_rice_plant | 3.87 | HC |
| SRR3472900 | root | nontransgenic_rice_plant | 5.46 | HC |
| SRR1213694 | root | wt | 10.50 | HC |
| SRR4947479 | root | control | 5.20 | HC |
| SRR4947482 | root | Al | 7.90 | HC |
| SRR4947487 | root | control | 5.81 | HC |
| SRR4947488 | root | control | 4.92 | HC |
| SRR4947490 | root | Al | 6.88 | HC |
| SRR4947491 | root | Al | 7.63 | HC |
| SRR4947494 | root | control | 6.47 | HC |
| SRR4947498 | root | Al | 7.47 | HC |
| SRR4947499 | root | Al | 8.62 | HC |
| SRR4947500 | root | Al | 8.00 | HC |
| SRR4947501 | root | Al | 8.41 | HC |
| SRR4947502 | root | control | 7.77 | HC |
| SRR4947503 | root | control | 8.87 | HC |
| SRR4947504 | root | control | 5.92 | HC |
| SRR4947505 | root | control | 8.49 | HC |
| SRR4947506 | root | Al | 6.24 | HC |
| SRR4947507 | root | Al | 10.04 | HC |
| SRR4947508 | root | Al | 7.84 | HC |
| SRR4947509 | root | Al | 6.40 | HC |
| SRR6502091 | root | 100 mM NaCl | 9.52 | HC |
| SRR6502092 | root | 100 mM NaCl | 6.99 | HC |
| SRR6502093 | root | 100 mM NaCl | 8.72 | HC |
| SRR6502094 | root | control | 6.26 | HC |
| SRR6502095 | root | control | 6.57 | HC |
| SRR6502096 | root | control | 6.89 | HC |
| SRR6502103 | root | 100 mM NaCl | 10.77 | HC |
| SRR6502104 | root | 100 mM NaCl | 7.62 | HC |
| SRR6502105 | root | 100 mM NaCl | 7.76 | HC |
| SRR6502106 | root | control | 8.79 | HC |
| SRR6502107 | root | control | 8.32 | HC |
| SRR6502108 | root | control | 12.59 | HC |
| SRR1740434 | root_differentiation_zone | wt | 11.07 | HC |
| SRR1740435 | root_differentiation_zone | wt | 4.39 | HC |
| SRR1740436 | root_differentiation_zone | wt | 6.56 | HC |
| SRR1740431 | root_elongation_zone | wt | 5.24 | HC |
| SRR1740432 | root_elongation_zone | wt | 4.05 | HC |
| SRR1740428 | root_meristematic_zone | wt | 8.28 | HC |
| SRR1740429 | root_meristematic_zone | wt | 11.49 | HC |
| SRR1740430 | root_meristematic_zone | wt | 9.84 | HC |
| SRR2154086 | seedling | wt | 8.84 | HC |
| SRR2154082 | seedling | wt | 10.25 | HC |
| SRR2154083 | seedling | wt | 10.09 | HC |
| SRR2154084 | seedling | wt | 7.55 | HC |
| SRR2154085 | seedling | wt | 6.41 | HC |
| SRR2154087 | seedling | wt | 8.11 | HC |
| SRR2857719 | seedling | drought_stress_0h | 6.20 | HC |
| SRR2857720 | seedling | drought_stress_1h | 6.93 | HC |
| SRR2857721 | seedling | drought_stress_6h | 3.07 | HC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 3.66 | HC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 56.75 | HC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 52.11 | HC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 47.22 | HC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 38.04 | HC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 46.65 | HC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 44.45 | HC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 42.59 | HC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 43.55 | HC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 39.99 | HC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 43.22 | HC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 37.61 | HC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 42.08 | HC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 57.36 | HC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 53.01 | HC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 51.37 | HC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 41.71 | HC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 46.76 | HC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 55.24 | HC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 46.43 | HC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 49.48 | HC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 41.48 | HC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 52.29 | HC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 43.49 | HC |
| SRR1617549 | shoot_apical_meristem | no collect | 13.08 | HC |
| SRR1617550 | shoot_apical_meristem | no collect | 16.43 | HC |
| SRR1617553 | shoot_apical_meristem | no collect | 13.28 | HC |
| SRR1617554 | shoot_apical_meristem | no collect | 21.45 | HC |
| SRR1617556 | shoot_apical_meristem | no collect | 12.25 | HC |
| SRR1617557 | shoot_apical_meristem | no collect | 15.35 | HC |
| SRR1617558 | shoot_apical_meristem | no collect | 18.29 | HC |
| SRR1617559 | shoot_apical_meristem | no collect | 22.92 | HC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 59.08 | HC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 62.61 | HC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 56.66 | HC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 34.13 | HC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 29.53 | HC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 33.09 | HC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 16.79 | HC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 17.52 | HC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 14.56 | HC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 5.08 | HC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 3.97 | HC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 5.14 | HC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 5.96 | HC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 4.02 | HC |