| SRR4457249 | 2nd_leaf | DAH4 | 7.53 | HC |
| SRR4457251 | 2nd_leaf | DAH4 | 5.65 | HC |
| SRR4457252 | 2nd_leaf | DAH12 | 5.10 | HC |
| SRR4457253 | 2nd_leaf | DAH12 | 5.39 | HC |
| SRR4457254 | 2nd_leaf | DAH12 | 5.62 | HC |
| SRR4457255 | 2nd_leaf | DAH20 | 7.61 | HC |
| SRR4457257 | 2nd_leaf | DAH20 | 7.37 | HC |
| SRR4457258 | 2nd_leaf | DAH28 | 5.93 | HC |
| SRR4457259 | 2nd_leaf | DAH28 | 5.69 | HC |
| SRR4457260 | 2nd_leaf | DAH28 | 8.13 | HC |
| SRR4457261 | 2nd_leaf | DAH36 | 7.44 | HC |
| SRR4457262 | 2nd_leaf | DAH36 | 5.83 | HC |
| SRR4457263 | 2nd_leaf | DAH36 | 9.49 | HC |
| SRR4457264 | 2nd_leaf | DAH44 | 8.82 | HC |
| SRR4457265 | 2nd_leaf | DAH44 | 8.82 | HC |
| SRR358797 | callus | wt | 13.76 | HC |
| SRR6320473 | carpel | wt | 7.60 | HC |
| SRR6320498 | carpel | wt | 7.95 | HC |
| SRR5560727 | caryopsis | wild_type | 17.64 | HC |
| SRR5560728 | caryopsis | wild_type | 23.69 | HC |
| SRR5560729 | caryopsis | wild_type | 16.35 | HC |
| SRR4947495 | root | control | 5.81 | HC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 4.51 | HC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 8.49 | HC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 9.05 | HC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 7.55 | HC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 11.24 | HC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 8.45 | HC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 6.74 | HC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 7.72 | HC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 8.93 | HC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 8.73 | HC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 4.87 | HC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 9.05 | HC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 6.37 | HC |
| SRR7265373 | embryo | dry seed 0 h | 4.25 | HC |
| SRR7265377 | embryo | 1hA | 4.77 | HC |
| SRR7265378 | embryo | 1hA | 3.60 | HC |
| SRR7265379 | embryo | 1hN | 3.94 | HC |
| SRR7265380 | embryo | 1hN | 4.10 | HC |
| SRR7265381 | embryo | 1hN | 3.60 | HC |
| SRR7265391 | embryo | 12hN | 5.63 | HC |
| SRR7265393 | embryo | 12hN | 5.10 | HC |
| SRR2338866 | endosprem | control | 7.55 | HC |
| SRR2338869 | endosprem | high_temperature | 3.80 | HC |
| SRR4457231 | flag_leaf | DAH4 | 4.36 | HC |
| SRR4457233 | flag_leaf | DAH4 | 3.37 | HC |
| SRR4457235 | flag_leaf | DAH12 | 4.92 | HC |
| SRR4457236 | flag_leaf | DAH12 | 3.94 | HC |
| SRR4457237 | flag_leaf | DAH20 | 4.34 | HC |
| SRR4457238 | flag_leaf | DAH20 | 5.61 | HC |
| SRR4457240 | flag_leaf | DAH28 | 5.26 | HC |
| SRR4457241 | flag_leaf | DAH28 | 5.52 | HC |
| SRR4457243 | flag_leaf | DAH36 | 4.77 | HC |
| SRR4457244 | flag_leaf | DAH36 | 4.56 | HC |
| SRR4457245 | flag_leaf | DAH36 | 6.19 | HC |
| SRR4457248 | flag_leaf | DAH44 | 7.16 | HC |
| SRR1213690 | flower | wt(flower buds) | 9.15 | HC |
| SRR1213691 | flower | wt | 10.72 | HC |
| SRR8060835 | leaf | wild_type | 4.25 | HC |
| SRR8060836 | leaf | wild_type | 5.00 | HC |
| SRR8060837 | leaf | wild_type | 3.04 | HC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 6.42 | HC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 8.54 | HC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 5.66 | HC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 8.70 | HC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 9.37 | HC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 6.03 | HC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 8.56 | HC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 9.09 | HC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 5.52 | HC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 7.61 | HC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 5.88 | HC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 5.13 | HC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 4.64 | HC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 7.26 | HC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 6.67 | HC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 5.51 | HC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 6.15 | HC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 7.77 | HC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 14.63 | HC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 9.46 | HC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 10.22 | HC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 10.37 | HC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 18.80 | HC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 6.84 | HC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 8.22 | HC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 6.10 | HC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 5.78 | HC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 5.49 | HC |
| SRR1761788 | leaf | "wild_type,drought,2" | 5.78 | HC |
| SRR1761789 | leaf | "wild_type,drought,2" | 7.94 | HC |
| SRR1761780 | leaf | "wild_type,drought,1" | 5.78 | HC |
| SRR1761781 | leaf | "wild_type,drought,1" | 7.94 | HC |
| SRR1761528 | leaf | drought | 5.78 | HC |
| SRR1761529 | leaf | drought | 7.94 | HC |
| SRR504365 | leaf | wt | 9.15 | HC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 7.22 | HC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 5.13 | HC |
| SRR6417969 | leaf | H2O_control | 3.89 | HC |
| SRR3209771 | leaf | Drought;Long_Day | 5.04 | HC |
| SRR3209772 | leaf | Drought;Long_Day | 6.32 | HC |
| SRR3209776 | leaf | Drought;Short_Day | 4.96 | HC |
| SRR3209778 | leaf | Drought;Long_Day | 5.71 | HC |
| SRR8611900 | leaf | Non-inoculated | 3.88 | HC |
| SRR8611901 | leaf | Non-inoculated | 4.92 | HC |
| SRR8611902 | leaf | Non-inoculated | 4.23 | HC |
| SRR6216698 | leaf | nontransgenic rice plant | 5.78 | HC |
| SRR6216699 | leaf | nontransgenic rice plant | 5.90 | HC |
| SRR1213692 | leaf | wt | 8.67 | HC |
| SRR1213693 | leaf | wt | 8.59 | HC |
| SRR6502087 | leaf | 100 mM NaCl | 4.77 | HC |
| SRR6502099 | leaf | 100 mM NaCl | 5.75 | HC |
| SRR5856933 | leaf | control | 4.19 | HC |
| SRR5856934 | leaf | control | 2.72 | HC |
| SRR5856935 | leaf | control | 3.25 | HC |
| SRR6053392 | leaf | ethanol solvent (untreated control) | 12.72 | HC |
| SRR6053393 | leaf | ethanol solvent (untreated control) | 14.03 | HC |
| SRR6053394 | leaf | ethanol solvent (untreated control) | 22.26 | HC |
| SRR6053395 | leaf | gibberellic acid (GA) | 13.80 | HC |
| SRR6053396 | leaf | gibberellic acid (GA) | 13.42 | HC |
| SRR6053397 | leaf | gibberellic acid (GA) | 23.81 | HC |
| SRR6053398 | leaf | Paclobutrazol (PB) | 17.86 | HC |
| SRR6053399 | leaf | Paclobutrazol (PB) | 37.70 | HC |
| SRR6053400 | leaf | Paclobutrazol (PB) | 26.49 | HC |
| SRR6168973 | leaf | none (control) | 9.61 | HC |
| SRR6168974 | leaf | none (control) | 6.96 | HC |
| SRR6168975 | leaf | none (control) | 11.22 | HC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 13.65 | HC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 3.44 | HC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 9.90 | HC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 5.49 | HC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 3.48 | HC |
| SRR8582891 | panicle | PM | 7.22 | HC |
| SRR8582892 | panicle | PM | 12.61 | HC |
| SRR8582893 | panicle | PM | 7.42 | HC |
| SRR5110429 | panicle | Dawn | 10.17 | HC |
| SRR5110430 | panicle | Dawn | 13.24 | HC |
| SRR5110431 | panicle | Dawn | 9.36 | HC |
| SRR5110432 | panicle | Dawn | 6.87 | HC |
| SRR4947496 | root | control | 4.92 | HC |
| SRR5110434 | panicle | Dawn + 3.5h | 6.59 | HC |
| SRR5110435 | panicle | Dawn + 3.5h | 6.78 | HC |
| SRR5110436 | panicle | Dawn + 3.5h | 9.41 | HC |
| SRR5110437 | panicle | Dawn + 7h | 8.52 | HC |
| SRR5110438 | panicle | Dawn + 7h | 8.52 | HC |
| SRR5110439 | panicle | Dawn + 7h | 8.95 | HC |
| SRR5110440 | panicle | Dawn + 7h | 12.78 | HC |
| SRR5110441 | panicle | Dawn + 10.5h | 9.42 | HC |
| SRR5110442 | panicle | Dawn + 10.5h | 10.65 | HC |
| SRR5110443 | panicle | Dawn + 10.5h | 8.62 | HC |
| SRR5110444 | panicle | Dawn + 10.5h | 13.28 | HC |
| SRR5110445 | panicle | Dusk | 7.07 | HC |
| SRR5110446 | panicle | Dusk | 11.96 | HC |
| SRR5110447 | panicle | Dusk | 13.54 | HC |
| SRR5110448 | panicle | Dusk | 11.97 | HC |
| SRR5110449 | panicle | Dawn + 14h | 18.71 | HC |
| SRR5110450 | panicle | Dawn + 14h | 7.93 | HC |
| SRR5110451 | panicle | Dawn + 14h | 10.96 | HC |
| SRR5110452 | panicle | Dawn + 14h | 13.68 | HC |
| SRR5110453 | panicle | Dawn + 17.5h | 7.98 | HC |
| SRR5110454 | panicle | Dawn + 17.5h | 4.55 | HC |
| SRR5110455 | panicle | Dawn + 17.5h | 8.54 | HC |
| SRR5110456 | panicle | Dawn + 17.5h | 8.77 | HC |
| SRR5110457 | panicle | Dawn + 21h | 10.60 | HC |
| SRR5110459 | panicle | Dawn + 21h | 6.54 | HC |
| SRR5110460 | panicle | Dawn + 21h | 10.46 | HC |
| SRR1213696 | endosprem | wt(milk grains) | 4.02 | HC |
| SRR1633185 | panicle | WT | 7.08 | HC |
| SRR5278374 | pistil | "Balilla,S1" | 4.01 | HC |
| SRR5278375 | pistil | "Balilla,S1" | 4.99 | HC |
| SRR5278376 | pistil | "Balilla,S2" | 8.68 | HC |
| SRR5278377 | pistil | "Balilla,S2" | 8.17 | HC |
| SRR5278378 | pistil | "Balilla,S3" | 14.96 | HC |
| SRR5278379 | pistil | "Balilla,S3" | 14.30 | HC |
| SRR5126147 | root | "mock,1_day" | 6.14 | HC |
| SRR5126149 | root | "mock,1_day" | 5.15 | HC |
| SRR5126153 | root | "mock,7_days" | 7.00 | HC |
| SRR5126155 | root | "mock,7_days" | 6.14 | HC |
| SRR5126157 | root | "mock,7_days" | 6.83 | HC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 5.60 | HC |
| SRR5126165 | root | "mock,14_days" | 6.34 | HC |
| SRR5126169 | root | "mock,14_days" | 6.60 | HC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 6.17 | HC |
| SRR3472897 | root | nontransgenic_rice_plant | 2.92 | HC |
| SRR3472900 | root | nontransgenic_rice_plant | 3.59 | HC |
| SRR1213694 | root | wt | 6.98 | HC |
| SRR1213695 | root | wt | 8.68 | HC |
| SRR4947479 | root | control | 5.11 | HC |
| SRR4947481 | root | control | 6.13 | HC |
| SRR4947482 | root | Al | 8.80 | HC |
| SRR4947483 | root | Al | 5.30 | HC |
| SRR4947484 | root | Al | 6.61 | HC |
| SRR4947485 | root | Al | 7.46 | HC |
| SRR4947488 | root | control | 6.41 | HC |
| SRR4947489 | root | control | 6.19 | HC |
| SRR4947490 | root | Al | 6.00 | HC |
| SRR4947491 | root | Al | 11.06 | HC |
| SRR4947492 | root | Al | 8.67 | HC |
| SRR4947493 | root | Al | 5.78 | HC |
| SRR4947494 | root | control | 8.79 | HC |
| SRR4947497 | root | control | 11.40 | HC |
| SRR4947498 | root | Al | 8.97 | HC |
| SRR4947499 | root | Al | 6.58 | HC |
| SRR4947500 | root | Al | 9.95 | HC |
| SRR4947501 | root | Al | 17.08 | HC |
| SRR4947502 | root | control | 9.40 | HC |
| SRR4947503 | root | control | 8.30 | HC |
| SRR4947504 | root | control | 11.20 | HC |
| SRR4947505 | root | control | 6.41 | HC |
| SRR4947506 | root | Al | 4.26 | HC |
| SRR4947507 | root | Al | 12.90 | HC |
| SRR4947508 | root | Al | 5.31 | HC |
| SRR4947509 | root | Al | 7.60 | HC |
| SRR6502091 | root | 100 mM NaCl | 5.34 | HC |
| SRR6502092 | root | 100 mM NaCl | 6.28 | HC |
| SRR6502093 | root | 100 mM NaCl | 6.32 | HC |
| SRR6502103 | root | 100 mM NaCl | 7.22 | HC |
| SRR6502104 | root | 100 mM NaCl | 6.92 | HC |
| SRR6502105 | root | 100 mM NaCl | 5.53 | HC |
| SRR1740436 | root_differentiation_zone | wt | 4.45 | HC |
| SRR1740433 | root_elongation_zone | wt | 5.16 | HC |
| SRR1740430 | root_meristematic_zone | wt | 3.45 | HC |
| SRR6441554 | seedling | wild_type | 3.13 | HC |
| SRR2154086 | seedling | wt | 6.21 | HC |
| SRR2154082 | seedling | wt | 4.43 | HC |
| SRR2154083 | seedling | wt | 5.45 | HC |
| SRR2154084 | seedling | wt | 4.55 | HC |
| SRR2154085 | seedling | wt | 6.33 | HC |
| SRR2154087 | seedling | wt | 7.58 | HC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 9.38 | HC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 8.72 | HC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 7.77 | HC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 3.44 | HC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 3.97 | HC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 3.27 | HC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 5.78 | HC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 7.01 | HC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 2.78 | HC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 3.66 | HC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 5.40 | HC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 14.81 | HC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 16.01 | HC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 17.63 | HC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 22.43 | HC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 12.68 | HC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 10.68 | HC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 16.39 | HC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 17.81 | HC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 13.32 | HC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 18.11 | HC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 16.56 | HC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 13.42 | HC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 17.88 | HC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 20.15 | HC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 13.43 | HC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 16.24 | HC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 12.30 | HC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 15.21 | HC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 24.06 | HC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 11.99 | HC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 16.29 | HC |
| SRR1617554 | shoot_apical_meristem | no collect | 9.89 | HC |
| SRR1617558 | shoot_apical_meristem | no collect | 8.71 | HC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 15.69 | HC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 16.81 | HC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 13.73 | HC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 14.91 | HC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 16.19 | HC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 19.13 | HC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 15.04 | HC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 20.15 | HC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 18.11 | HC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 8.70 | HC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 10.03 | HC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 10.06 | HC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 8.50 | HC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 10.95 | HC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 10.21 | HC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 6.21 | HC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 9.95 | HC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 8.16 | HC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 9.34 | HC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 7.17 | HC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 6.29 | HC |