| SRR4457253 | 2nd_leaf | DAH12 | 4.14 | HC |
| SRR4457259 | 2nd_leaf | DAH28 | 6.15 | HC |
| SRR3745126 | anther | wt | 134.04 | HC |
| SRR3745127 | anther | wt | 127.79 | HC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 9.08 | HC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 7.05 | HC |
| SRR4947495 | root | control | 16.65 | HC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 5.53 | HC |
| SRR7265400 | coleoptile | 2dA | 26.20 | HC |
| SRR7265401 | coleoptile | 2dA | 26.79 | HC |
| SRR7265402 | coleoptile | 2dA | 23.91 | HC |
| SRR7265403 | coleoptile | 2dN | 20.11 | HC |
| SRR7265404 | coleoptile | 2dN | 15.73 | HC |
| SRR7265405 | coleoptile | 2dN | 16.56 | HC |
| SRR7265406 | coleoptile | 3dA | 31.79 | HC |
| SRR7265407 | coleoptile | 3dA | 21.27 | HC |
| SRR7265408 | coleoptile | 3dA | 19.99 | HC |
| SRR7265409 | coleoptile | 3dN | 22.67 | HC |
| SRR7265410 | coleoptile | 3dN | 23.06 | HC |
| SRR7265411 | coleoptile | 3dN | 17.57 | HC |
| SRR7265412 | coleoptile | 4dA | 10.75 | HC |
| SRR7265413 | coleoptile | 4dA | 16.78 | HC |
| SRR7265414 | coleoptile | 4dA | 18.40 | HC |
| SRR7265415 | coleoptile | 4dN | 24.41 | HC |
| SRR7265416 | coleoptile | 4dN | 12.82 | HC |
| SRR7265417 | coleoptile | 4dN | 16.46 | HC |
| SRR7265418 | coleoptile | 3dN1dA | 20.99 | HC |
| SRR7265419 | coleoptile | 3dN1dA | 26.50 | HC |
| SRR7265420 | coleoptile | 3dN1dA | 28.81 | HC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 14.77 | HC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 6.26 | HC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 6.38 | HC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 8.50 | HC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 5.37 | HC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 4.93 | HC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 4.58 | HC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 5.32 | HC |
| SRR7265374 | embryo | dry seed 0 h | 11.45 | HC |
| SRR7265376 | embryo | 1hA | 11.39 | HC |
| SRR7265377 | embryo | 1hA | 9.07 | HC |
| SRR7265378 | embryo | 1hA | 14.43 | HC |
| SRR7265379 | embryo | 1hN | 11.83 | HC |
| SRR7265380 | embryo | 1hN | 5.67 | HC |
| SRR7265381 | embryo | 1hN | 13.22 | HC |
| SRR7265382 | embryo | 3hA | 7.28 | HC |
| SRR7265383 | embryo | 3hA | 12.80 | HC |
| SRR7265384 | embryo | 3hA | 17.33 | HC |
| SRR7265385 | embryo | 3hN | 7.77 | HC |
| SRR7265386 | embryo | 3hN | 12.52 | HC |
| SRR7265387 | embryo | 3hN | 14.19 | HC |
| SRR7265388 | embryo | 12hA | 19.96 | HC |
| SRR7265389 | embryo | 12hA | 19.14 | HC |
| SRR7265390 | embryo | 12hA | 16.83 | HC |
| SRR7265391 | embryo | 12hN | 16.93 | HC |
| SRR7265392 | embryo | 12hN | 15.74 | HC |
| SRR7265393 | embryo | 12hN | 16.16 | HC |
| SRR7265394 | embryo | 24hA | 18.59 | HC |
| SRR7265395 | embryo | 24hA | 14.41 | HC |
| SRR7265396 | embryo | 24hA | 18.19 | HC |
| SRR7265397 | embryo | 24hN | 15.21 | HC |
| SRR7265398 | embryo | 24hN | 21.26 | HC |
| SRR7265399 | embryo | 24hN | 14.61 | HC |
| SRR2338867 | endosprem | control | 2.35 | HC |
| SRR2338868 | endosprem | high_temperature | 3.93 | HC |
| SRR4457231 | flag_leaf | DAH4 | 5.15 | HC |
| SRR4457232 | flag_leaf | DAH4 | 3.60 | HC |
| SRR4457236 | flag_leaf | DAH12 | 5.19 | HC |
| SRR1213690 | flower | wt(flower buds) | 8.15 | HC |
| SRR1213691 | flower | wt | 22.15 | HC |
| SRR8240824 | leaf | wild_type | 2.87 | HC |
| SRR8240826 | leaf | wild_type | 2.75 | HC |
| SRR8240818 | leaf | wild_type | 3.32 | HC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 14.93 | HC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 6.18 | HC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 8.33 | HC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 6.53 | HC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 16.21 | HC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 26.05 | HC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 8.00 | HC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 4.87 | HC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 13.27 | HC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 8.01 | HC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 102.76 | HC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 17.47 | HC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 8.65 | HC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 5.86 | HC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 4.65 | HC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 82.44 | HC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 123.26 | HC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 8.56 | HC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 6.16 | HC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 9.06 | HC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 6.68 | HC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 10.77 | HC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 8.24 | HC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 14.06 | HC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 16.12 | HC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 95.85 | HC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 5.79 | HC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 5.08 | HC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 10.69 | HC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 7.91 | HC |
| SRR1761788 | leaf | "wild_type,drought,2" | 9.25 | HC |
| SRR1761789 | leaf | "wild_type,drought,2" | 5.60 | HC |
| SRR1761790 | leaf | "wild_type,control,2" | 23.37 | HC |
| SRR1761780 | leaf | "wild_type,drought,1" | 9.25 | HC |
| SRR1761781 | leaf | "wild_type,drought,1" | 5.60 | HC |
| SRR1761782 | leaf | "wild_type,control,1" | 23.37 | HC |
| SRR1761528 | leaf | drought | 9.25 | HC |
| SRR1761529 | leaf | drought | 5.60 | HC |
| SRR1761530 | leaf | control | 23.37 | HC |
| SRR504365 | leaf | wt | 4.44 | HC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 4.33 | HC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 7.70 | HC |
| SRR6417968 | leaf | H2O_control | 5.16 | HC |
| SRR3209769 | leaf | Watered;Long_Day | 4.30 | HC |
| SRR3209770 | leaf | Watered;Long_Day | 4.31 | HC |
| SRR3209771 | leaf | Drought;Long_Day | 4.49 | HC |
| SRR3209774 | leaf | Watered;Short_Day | 4.38 | HC |
| SRR3209778 | leaf | Drought;Long_Day | 4.42 | HC |
| SRR3209780 | leaf | Drought;Short_Day | 5.98 | HC |
| SRR1213692 | leaf | wt | 7.37 | HC |
| SRR1213693 | leaf | wt | 10.33 | HC |
| SRR6502086 | leaf | 100 mM NaCl | 5.49 | HC |
| SRR6502087 | leaf | 100 mM NaCl | 5.02 | HC |
| SRR6502088 | leaf | control | 8.19 | HC |
| SRR6502098 | leaf | 100 mM NaCl | 7.93 | HC |
| SRR6502099 | leaf | 100 mM NaCl | 5.11 | HC |
| SRR5856932 | leaf | salt | 1.99 | HC |
| SRR5856936 | leaf | salt | 2.23 | HC |
| SRR6168973 | leaf | none (control) | 5.97 | HC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 5.74 | HC |
| SRR6168979 | leaf | none (control) | 3.25 | HC |
| SRR6168980 | leaf | none (control) | 1.86 | HC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 4.66 | HC |
| SRR8582889 | panicle | AM | 2.46 | HC |
| SRR8582890 | panicle | AM | 37.18 | HC |
| SRR5110429 | panicle | Dawn | 16.68 | HC |
| SRR5110432 | panicle | Dawn | 55.63 | HC |
| SRR4947496 | root | control | 22.27 | HC |
| SRR5110433 | panicle | Dawn + 3.5h | 11.38 | HC |
| SRR5110434 | panicle | Dawn + 3.5h | 24.36 | HC |
| SRR5110435 | panicle | Dawn + 3.5h | 6.79 | HC |
| SRR5110437 | panicle | Dawn + 7h | 17.70 | HC |
| SRR5110438 | panicle | Dawn + 7h | 14.34 | HC |
| SRR5110439 | panicle | Dawn + 7h | 7.36 | HC |
| SRR5110441 | panicle | Dawn + 10.5h | 6.09 | HC |
| SRR5110443 | panicle | Dawn + 10.5h | 121.16 | HC |
| SRR5110446 | panicle | Dusk | 6.01 | HC |
| SRR5110448 | panicle | Dusk | 30.15 | HC |
| SRR5110453 | panicle | Dawn + 17.5h | 4.36 | HC |
| SRR5110455 | panicle | Dawn + 17.5h | 7.40 | HC |
| SRR5110456 | panicle | Dawn + 17.5h | 81.61 | HC |
| SRR5110458 | panicle | Dawn + 21h | 7.08 | HC |
| SRR5110460 | panicle | Dawn + 21h | 13.99 | HC |
| SRR1213696 | endosprem | wt(milk grains) | 10.77 | HC |
| SRR1213697 | endosprem | wt(mature seeds) | 3.94 | HC |
| SRR5126147 | root | "mock,1_day" | 5.28 | HC |
| SRR5126148 | root | "mock,1_day" | 4.50 | HC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 10.52 | HC |
| SRR5126153 | root | "mock,7_days" | 10.39 | HC |
| SRR5126155 | root | "mock,7_days" | 4.64 | HC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 8.17 | HC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 10.04 | HC |
| SRR5126167 | root | "mock,14_days" | 4.55 | HC |
| SRR3472897 | root | nontransgenic_rice_plant | 10.34 | HC |
| SRR3472900 | root | nontransgenic_rice_plant | 4.82 | HC |
| SRR1213694 | root | wt | 10.37 | HC |
| SRR1213695 | root | wt | 4.09 | HC |
| SRR4947478 | root | control | 192.18 | HC |
| SRR4947479 | root | control | 10.07 | HC |
| SRR4947480 | root | control | 26.13 | HC |
| SRR4947481 | root | control | 9.27 | HC |
| SRR4947482 | root | Al | 14.43 | HC |
| SRR4947483 | root | Al | 20.27 | HC |
| SRR4947484 | root | Al | 19.29 | HC |
| SRR4947485 | root | Al | 20.64 | HC |
| SRR4947487 | root | control | 20.63 | HC |
| SRR4947488 | root | control | 27.30 | HC |
| SRR4947489 | root | control | 22.77 | HC |
| SRR4947490 | root | Al | 34.65 | HC |
| SRR4947491 | root | Al | 9.77 | HC |
| SRR4947492 | root | Al | 18.93 | HC |
| SRR4947493 | root | Al | 27.67 | HC |
| SRR4947494 | root | control | 22.02 | HC |
| SRR4947497 | root | control | 20.74 | HC |
| SRR4947498 | root | Al | 21.97 | HC |
| SRR4947499 | root | Al | 12.99 | HC |
| SRR4947500 | root | Al | 18.75 | HC |
| SRR4947501 | root | Al | 13.87 | HC |
| SRR4947502 | root | control | 8.26 | HC |
| SRR4947503 | root | control | 13.52 | HC |
| SRR4947504 | root | control | 15.59 | HC |
| SRR4947505 | root | control | 18.02 | HC |
| SRR4947506 | root | Al | 21.82 | HC |
| SRR4947508 | root | Al | 21.45 | HC |
| SRR4947509 | root | Al | 19.87 | HC |
| SRR6502091 | root | 100 mM NaCl | 5.22 | HC |
| SRR6502094 | root | control | 7.70 | HC |
| SRR6502096 | root | control | 4.72 | HC |
| SRR6502104 | root | 100 mM NaCl | 8.68 | HC |
| SRR6502106 | root | control | 6.91 | HC |
| SRR6502108 | root | control | 6.29 | HC |
| SRR1740434 | root_differentiation_zone | wt | 6.10 | HC |
| SRR1740435 | root_differentiation_zone | wt | 14.65 | HC |
| SRR1740436 | root_differentiation_zone | wt | 10.33 | HC |
| SRR1740431 | root_elongation_zone | wt | 19.35 | HC |
| SRR1740432 | root_elongation_zone | wt | 5.93 | HC |
| SRR1740433 | root_elongation_zone | wt | 20.82 | HC |
| SRR1740428 | root_meristematic_zone | wt | 55.27 | HC |
| SRR1740429 | root_meristematic_zone | wt | 10.15 | HC |
| SRR1740430 | root_meristematic_zone | wt | 4.25 | HC |
| SRR6441555 | seedling | wild_type | 3.77 | HC |
| SRR2154084 | seedling | wt | 5.77 | HC |
| SRR2154085 | seedling | wt | 19.94 | HC |
| SRR2154087 | seedling | wt | 14.74 | HC |
| SRR2857721 | seedling | drought_stress_6h | 6.23 | HC |
| SRR358791 | seedling | wt | 58.81 | HC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 36.56 | HC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 21.22 | HC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 19.93 | HC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 21.50 | HC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 13.37 | HC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 32.90 | HC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 14.58 | HC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 81.31 | HC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 6.52 | HC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 8.64 | HC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 76.38 | HC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 84.03 | HC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 75.78 | HC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 35.54 | HC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 38.41 | HC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 42.50 | HC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 28.08 | HC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 38.85 | HC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 53.65 | HC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 3.49 | HC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 3.80 | HC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 6.15 | HC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 4.23 | HC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 4.17 | HC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 2.91 | HC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 2.98 | HC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 64.37 | HC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 4.16 | HC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 11.39 | HC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 9.15 | HC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 26.61 | HC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 63.48 | HC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 11.22 | HC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 63.33 | HC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 64.54 | HC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 67.79 | HC |
| SRR1617553 | shoot_apical_meristem | no collect | 70.95 | HC |
| SRR1617554 | shoot_apical_meristem | no collect | 13.49 | HC |
| SRR1617556 | shoot_apical_meristem | no collect | 74.27 | HC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 14.31 | HC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 12.55 | HC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 6.71 | HC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 10.65 | HC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 9.18 | HC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 14.75 | HC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 7.03 | HC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 5.64 | HC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 111.06 | HC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 5.83 | HC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 148.23 | HC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 3.39 | HC |