| SRR4457252 | 2nd_leaf | DAH12 | 14.46 | HC |
| SRR4457253 | 2nd_leaf | DAH12 | 74.71 | HC |
| SRR4457255 | 2nd_leaf | DAH20 | 104.03 | HC |
| SRR4457256 | 2nd_leaf | DAH20 | 20.87 | HC |
| SRR4457257 | 2nd_leaf | DAH20 | 64.95 | HC |
| SRR4457258 | 2nd_leaf | DAH28 | 132.33 | HC |
| SRR4457259 | 2nd_leaf | DAH28 | 16.19 | HC |
| SRR4457260 | 2nd_leaf | DAH28 | 20.19 | HC |
| SRR4457261 | 2nd_leaf | DAH36 | 27.98 | HC |
| SRR4457262 | 2nd_leaf | DAH36 | 6.78 | HC |
| SRR4457265 | 2nd_leaf | DAH44 | 4.90 | HC |
| SRR4457266 | 2nd_leaf | DAH44 | 18.17 | HC |
| SRR3745126 | anther | wt | 13.40 | HC |
| SRR3745127 | anther | wt | 10.00 | HC |
| SRR358795 | callus | wt | 69.48 | HC |
| SRR358796 | callus | wt | 70.11 | HC |
| SRR358797 | callus | wt | 60.37 | HC |
| SRR358798 | callus | wt | 56.39 | HC |
| SRR6320498 | carpel | wt | 17.23 | HC |
| SRR5560729 | caryopsis | wild_type | 20.76 | HC |
| SRR7265400 | coleoptile | 2dA | 16.33 | HC |
| SRR7265401 | coleoptile | 2dA | 13.68 | HC |
| SRR7265404 | coleoptile | 2dN | 5.03 | HC |
| SRR7265407 | coleoptile | 3dA | 3.34 | HC |
| SRR7265412 | coleoptile | 4dA | 12.27 | HC |
| SRR7265413 | coleoptile | 4dA | 19.12 | HC |
| SRR7265414 | coleoptile | 4dA | 8.63 | HC |
| SRR7265418 | coleoptile | 3dN1dA | 20.54 | HC |
| SRR7265373 | embryo | dry seed 0 h | 5.97 | HC |
| SRR7265374 | embryo | dry seed 0 h | 5.89 | HC |
| SRR7265377 | embryo | 1hA | 4.90 | HC |
| SRR7265378 | embryo | 1hA | 3.30 | HC |
| SRR7265379 | embryo | 1hN | 4.15 | HC |
| SRR7265380 | embryo | 1hN | 4.39 | HC |
| SRR7265381 | embryo | 1hN | 4.28 | HC |
| SRR7265386 | embryo | 3hN | 6.60 | HC |
| SRR7265387 | embryo | 3hN | 5.64 | HC |
| SRR7265391 | embryo | 12hN | 5.89 | HC |
| SRR7265393 | embryo | 12hN | 5.40 | HC |
| SRR7265395 | embryo | 24hA | 14.50 | HC |
| SRR7265396 | embryo | 24hA | 13.82 | HC |
| SRR4457232 | flag_leaf | DAH4 | 18.06 | HC |
| SRR4457233 | flag_leaf | DAH4 | 10.11 | HC |
| SRR4457234 | flag_leaf | DAH12 | 10.76 | HC |
| SRR4457235 | flag_leaf | DAH12 | 8.11 | HC |
| SRR4457237 | flag_leaf | DAH20 | 3.43 | HC |
| SRR4457239 | flag_leaf | DAH20 | 4.83 | HC |
| SRR4457240 | flag_leaf | DAH28 | 7.71 | HC |
| SRR4457242 | flag_leaf | DAH28 | 21.91 | HC |
| SRR4457243 | flag_leaf | DAH36 | 14.68 | HC |
| SRR4457244 | flag_leaf | DAH36 | 5.72 | HC |
| SRR4457245 | flag_leaf | DAH36 | 9.29 | HC |
| SRR4457246 | flag_leaf | DAH44 | 65.40 | HC |
| SRR4457247 | flag_leaf | DAH44 | 14.21 | HC |
| SRR4457248 | flag_leaf | DAH44 | 44.09 | HC |
| SRR1213690 | flower | wt(flower buds) | 12.86 | HC |
| SRR1213691 | flower | wt | 18.83 | HC |
| SRR8060837 | leaf | wild_type | 3.35 | HC |
| SRR8240824 | leaf | wild_type | 9.06 | HC |
| SRR8240826 | leaf | wild_type | 13.96 | HC |
| SRR8240819 | leaf | wild_type | 9.09 | HC |
| SRR8240820 | leaf | wild_type | 25.86 | HC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 10.12 | HC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 9.60 | HC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 5.00 | HC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 5.19 | HC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 6.72 | HC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 5.20 | HC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 12.11 | HC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 5.37 | HC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 6.23 | HC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 6.29 | HC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 5.45 | HC |
| SRR1761788 | leaf | "wild_type,drought,2" | 8.55 | HC |
| SRR1761780 | leaf | "wild_type,drought,1" | 8.55 | HC |
| SRR1761528 | leaf | drought | 8.55 | HC |
| SRR504365 | leaf | wt | 7.78 | HC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 21.72 | HC |
| SRR6417967 | leaf | H2O_control | 5.54 | HC |
| SRR3209770 | leaf | Watered;Long_Day | 17.77 | HC |
| SRR3209773 | leaf | Watered;Short_Day | 22.06 | HC |
| SRR3209774 | leaf | Watered;Short_Day | 3.94 | HC |
| SRR3209776 | leaf | Drought;Short_Day | 5.04 | HC |
| SRR3209778 | leaf | Drought;Long_Day | 5.46 | HC |
| SRR8611901 | leaf | Non-inoculated | 4.95 | HC |
| SRR6216698 | leaf | nontransgenic rice plant | 5.19 | HC |
| SRR6216699 | leaf | nontransgenic rice plant | 3.55 | HC |
| SRR1213692 | leaf | wt | 87.33 | HC |
| SRR1213693 | leaf | wt | 12.19 | HC |
| SRR6502088 | leaf | control | 19.64 | HC |
| SRR6502090 | leaf | control | 9.37 | HC |
| SRR6502097 | leaf | 100 mM NaCl | 12.42 | HC |
| SRR6502098 | leaf | 100 mM NaCl | 15.32 | HC |
| SRR6502102 | leaf | control | 11.92 | HC |
| SRR5856927 | leaf | control | 7.33 | HC |
| SRR5856928 | leaf | control | 4.62 | HC |
| SRR5856929 | leaf | control | 6.10 | HC |
| SRR5856930 | leaf | salt | 4.31 | HC |
| SRR5856931 | leaf | salt | 21.40 | HC |
| SRR5856933 | leaf | control | 12.66 | HC |
| SRR5856934 | leaf | control | 9.95 | HC |
| SRR5856935 | leaf | control | 12.57 | HC |
| SRR5856936 | leaf | salt | 7.86 | HC |
| SRR5856937 | leaf | salt | 2.13 | HC |
| SRR6053396 | leaf | gibberellic acid (GA) | 51.37 | HC |
| SRR6053397 | leaf | gibberellic acid (GA) | 9.09 | HC |
| SRR6053398 | leaf | Paclobutrazol (PB) | 7.01 | HC |
| SRR6168979 | leaf | none (control) | 2.68 | HC |
| SRR8582888 | panicle | AM | 3.32 | HC |
| SRR8582890 | panicle | AM | 3.28 | HC |
| SRR5110431 | panicle | Dawn | 5.38 | HC |
| SRR5110434 | panicle | Dawn + 3.5h | 10.34 | HC |
| SRR5110435 | panicle | Dawn + 3.5h | 7.71 | HC |
| SRR5110436 | panicle | Dawn + 3.5h | 11.49 | HC |
| SRR5110437 | panicle | Dawn + 7h | 14.69 | HC |
| SRR5110438 | panicle | Dawn + 7h | 10.08 | HC |
| SRR5110439 | panicle | Dawn + 7h | 10.30 | HC |
| SRR5110440 | panicle | Dawn + 7h | 19.12 | HC |
| SRR5110441 | panicle | Dawn + 10.5h | 9.01 | HC |
| SRR5110442 | panicle | Dawn + 10.5h | 28.31 | HC |
| SRR5110443 | panicle | Dawn + 10.5h | 16.52 | HC |
| SRR5110444 | panicle | Dawn + 10.5h | 13.52 | HC |
| SRR5110446 | panicle | Dusk | 15.85 | HC |
| SRR5110447 | panicle | Dusk | 18.32 | HC |
| SRR5110448 | panicle | Dusk | 19.21 | HC |
| SRR5110449 | panicle | Dawn + 14h | 10.38 | HC |
| SRR5110451 | panicle | Dawn + 14h | 15.40 | HC |
| SRR5110452 | panicle | Dawn + 14h | 27.95 | HC |
| SRR5110453 | panicle | Dawn + 17.5h | 15.12 | HC |
| SRR5110454 | panicle | Dawn + 17.5h | 8.08 | HC |
| SRR5110455 | panicle | Dawn + 17.5h | 10.41 | HC |
| SRR5110456 | panicle | Dawn + 17.5h | 21.57 | HC |
| SRR5110457 | panicle | Dawn + 21h | 18.23 | HC |
| SRR5110459 | panicle | Dawn + 21h | 10.95 | HC |
| SRR5110460 | panicle | Dawn + 21h | 10.91 | HC |
| SRR1213696 | endosprem | wt(milk grains) | 17.30 | HC |
| SRR5278375 | pistil | "Balilla,S1" | 4.06 | HC |
| SRR5278377 | pistil | "Balilla,S2" | 6.43 | HC |
| SRR5126147 | root | "mock,1_day" | 25.42 | HC |
| SRR5126148 | root | "mock,1_day" | 9.32 | HC |
| SRR5126149 | root | "mock,1_day" | 162.83 | HC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 74.10 | HC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 32.24 | HC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 5.46 | HC |
| SRR5126153 | root | "mock,7_days" | 16.39 | HC |
| SRR5126155 | root | "mock,7_days" | 10.10 | HC |
| SRR5126157 | root | "mock,7_days" | 17.27 | HC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 9.81 | HC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 7.47 | HC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 9.85 | HC |
| SRR5126165 | root | "mock,14_days" | 19.80 | HC |
| SRR5126167 | root | "mock,14_days" | 12.09 | HC |
| SRR5126169 | root | "mock,14_days" | 11.36 | HC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 10.07 | HC |
| SRR3472897 | root | nontransgenic_rice_plant | 3.40 | HC |
| SRR1213694 | root | wt | 3.88 | HC |
| SRR1213695 | root | wt | 45.07 | HC |
| SRR6502091 | root | 100 mM NaCl | 6.35 | HC |
| SRR6502092 | root | 100 mM NaCl | 5.68 | HC |
| SRR6502094 | root | control | 11.33 | HC |
| SRR6502103 | root | 100 mM NaCl | 22.08 | HC |
| SRR6502104 | root | 100 mM NaCl | 26.53 | HC |
| SRR6502106 | root | control | 22.11 | HC |
| SRR6502107 | root | control | 11.53 | HC |
| SRR6502108 | root | control | 8.91 | HC |
| SRR2154086 | seedling | wt | 24.10 | HC |
| SRR2154082 | seedling | wt | 25.93 | HC |
| SRR2154083 | seedling | wt | 46.82 | HC |
| SRR2154084 | seedling | wt | 48.37 | HC |
| SRR2154085 | seedling | wt | 31.79 | HC |
| SRR2154087 | seedling | wt | 16.23 | HC |
| SRR2857719 | seedling | drought_stress_0h | 12.73 | HC |
| SRR2857720 | seedling | drought_stress_1h | 7.15 | HC |
| SRR2857721 | seedling | drought_stress_6h | 3.92 | HC |
| SRR358791 | seedling | wt | 42.20 | HC |
| SRR358792 | seedling | wt | 612.81 | HC |
| SRR358793 | seedling | wt | 139.78 | HC |
| SRR358794 | seedling | wt | 402.17 | HC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 41.55 | HC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 14.25 | HC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 37.10 | HC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 35.66 | HC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 22.55 | HC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 29.14 | HC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 31.52 | HC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 25.86 | HC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 50.08 | HC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 68.27 | HC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 102.50 | HC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 140.93 | HC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 274.07 | HC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 204.07 | HC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 207.46 | HC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 290.71 | HC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 228.04 | HC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 531.02 | HC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 530.79 | HC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 225.73 | HC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 288.81 | HC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 445.16 | HC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 5.84 | HC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 87.87 | HC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 6.59 | HC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 6.45 | HC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 5.85 | HC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 23.62 | HC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 3.97 | HC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 6.76 | HC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 12.71 | HC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 9.79 | HC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 9.24 | HC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 11.23 | HC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 9.77 | HC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 11.20 | HC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 10.75 | HC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 11.22 | HC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 11.70 | HC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 11.39 | HC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 11.70 | HC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 10.65 | HC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 9.32 | HC |
| SRR1617550 | shoot_apical_meristem | no collect | 13.60 | HC |
| SRR1617553 | shoot_apical_meristem | no collect | 54.66 | HC |
| SRR1617554 | shoot_apical_meristem | no collect | 69.38 | HC |
| SRR1617557 | shoot_apical_meristem | no collect | 54.59 | HC |
| SRR1617558 | shoot_apical_meristem | no collect | 58.89 | HC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 6.24 | HC |