| SRR5560728 | caryopsis | wild_type | 6.03 | HC |
| SRR5560729 | caryopsis | wild_type | 7.61 | HC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 6.28 | HC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 5.60 | HC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 7.07 | HC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 4.64 | HC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 6.21 | HC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 7.98 | HC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 8.49 | HC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 10.03 | HC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 7.12 | HC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 5.03 | HC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 6.66 | HC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 6.37 | HC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 11.05 | HC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 12.35 | HC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 7.28 | HC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 7.62 | HC |
| SRR7265385 | embryo | 3hN | 4.79 | HC |
| SRR7265387 | embryo | 3hN | 3.49 | HC |
| SRR1213690 | flower | wt(flower buds) | 6.10 | HC |
| SRR1213691 | flower | wt | 7.62 | HC |
| SRR8240824 | leaf | wild_type | 3.01 | HC |
| SRR8240820 | leaf | wild_type | 3.01 | HC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 4.83 | HC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 6.69 | HC |
| SRR8611900 | leaf | Non-inoculated | 3.97 | HC |
| SRR8611901 | leaf | Non-inoculated | 4.11 | HC |
| SRR6216699 | leaf | nontransgenic rice plant | 3.82 | HC |
| SRR5856927 | leaf | control | 2.87 | HC |
| SRR5856928 | leaf | control | 2.55 | HC |
| SRR5856929 | leaf | control | 2.97 | HC |
| SRR5856933 | leaf | control | 3.32 | HC |
| SRR6168973 | leaf | none (control) | 5.23 | HC |
| SRR6168974 | leaf | none (control) | 5.97 | HC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 6.84 | HC |
| SRR5110429 | panicle | Dawn | 4.90 | HC |
| SRR5110432 | panicle | Dawn | 4.45 | HC |
| SRR5110433 | panicle | Dawn + 3.5h | 5.67 | HC |
| SRR5110435 | panicle | Dawn + 3.5h | 4.81 | HC |
| SRR5110438 | panicle | Dawn + 7h | 5.08 | HC |
| SRR5110441 | panicle | Dawn + 10.5h | 5.48 | HC |
| SRR5110442 | panicle | Dawn + 10.5h | 4.93 | HC |
| SRR5110443 | panicle | Dawn + 10.5h | 4.84 | HC |
| SRR5110444 | panicle | Dawn + 10.5h | 5.37 | HC |
| SRR5110445 | panicle | Dusk | 5.54 | HC |
| SRR5110446 | panicle | Dusk | 7.42 | HC |
| SRR5110447 | panicle | Dusk | 6.94 | HC |
| SRR5110448 | panicle | Dusk | 6.90 | HC |
| SRR5110450 | panicle | Dawn + 14h | 5.34 | HC |
| SRR5110451 | panicle | Dawn + 14h | 5.67 | HC |
| SRR5110452 | panicle | Dawn + 14h | 6.53 | HC |
| SRR5110453 | panicle | Dawn + 17.5h | 5.71 | HC |
| SRR5110454 | panicle | Dawn + 17.5h | 5.12 | HC |
| SRR5110456 | panicle | Dawn + 17.5h | 6.49 | HC |
| SRR5110457 | panicle | Dawn + 21h | 4.51 | HC |
| SRR5110458 | panicle | Dawn + 21h | 4.47 | HC |
| SRR5110459 | panicle | Dawn + 21h | 5.92 | HC |
| SRR5110460 | panicle | Dawn + 21h | 6.41 | HC |
| SRR1633182 | panicle | WT | 5.97 | HC |
| SRR1633185 | panicle | WT | 6.27 | HC |
| SRR5278374 | pistil | "Balilla,S1" | 6.34 | HC |
| SRR5278375 | pistil | "Balilla,S1" | 6.26 | HC |
| SRR5278376 | pistil | "Balilla,S2" | 7.54 | HC |
| SRR5278377 | pistil | "Balilla,S2" | 7.26 | HC |
| SRR5278378 | pistil | "Balilla,S3" | 11.37 | HC |
| SRR5278379 | pistil | "Balilla,S3" | 16.83 | HC |
| SRR5126147 | root | "mock,1_day" | 4.63 | HC |
| SRR5126148 | root | "mock,1_day" | 5.56 | HC |
| SRR5126149 | root | "mock,1_day" | 5.59 | HC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 4.87 | HC |
| SRR5126153 | root | "mock,7_days" | 5.09 | HC |
| SRR5126155 | root | "mock,7_days" | 6.48 | HC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 8.68 | HC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 8.79 | HC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 6.61 | HC |
| SRR5126165 | root | "mock,14_days" | 6.23 | HC |
| SRR5126167 | root | "mock,14_days" | 6.72 | HC |
| SRR5126169 | root | "mock,14_days" | 5.71 | HC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 9.62 | HC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 8.48 | HC |
| SRR3472897 | root | nontransgenic_rice_plant | 4.36 | HC |
| SRR3472900 | root | nontransgenic_rice_plant | 4.74 | HC |
| SRR1213694 | root | wt | 6.72 | HC |
| SRR4947483 | root | Al | 4.23 | HC |
| SRR4947487 | root | control | 4.60 | HC |
| SRR4947491 | root | Al | 5.53 | HC |
| SRR6502091 | root | 100 mM NaCl | 6.38 | HC |
| SRR6502092 | root | 100 mM NaCl | 7.36 | HC |
| SRR6502093 | root | 100 mM NaCl | 6.29 | HC |
| SRR6502094 | root | control | 5.96 | HC |
| SRR6502095 | root | control | 6.11 | HC |
| SRR6502103 | root | 100 mM NaCl | 5.57 | HC |
| SRR6502104 | root | 100 mM NaCl | 5.31 | HC |
| SRR6502105 | root | 100 mM NaCl | 7.53 | HC |
| SRR6502106 | root | control | 5.60 | HC |
| SRR6502107 | root | control | 4.90 | HC |
| SRR1740434 | root_differentiation_zone | wt | 3.77 | HC |
| SRR1740435 | root_differentiation_zone | wt | 4.65 | HC |
| SRR1740436 | root_differentiation_zone | wt | 5.61 | HC |
| SRR1740431 | root_elongation_zone | wt | 5.29 | HC |
| SRR1740432 | root_elongation_zone | wt | 4.98 | HC |
| SRR1740433 | root_elongation_zone | wt | 6.23 | HC |
| SRR1740428 | root_meristematic_zone | wt | 5.32 | HC |
| SRR1740429 | root_meristematic_zone | wt | 3.58 | HC |
| SRR1740430 | root_meristematic_zone | wt | 4.36 | HC |
| SRR2154084 | seedling | wt | 4.39 | HC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 4.66 | HC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 4.17 | HC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 9.19 | HC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 14.96 | HC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 10.57 | HC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 8.19 | HC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 6.60 | HC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 7.31 | HC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 13.96 | HC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 13.33 | HC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 14.53 | HC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 13.14 | HC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 16.47 | HC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 12.02 | HC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 13.50 | HC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 13.69 | HC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 9.72 | HC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 12.78 | HC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 14.41 | HC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 11.38 | HC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 12.22 | HC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 10.31 | HC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 12.30 | HC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 8.74 | HC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 10.51 | HC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 11.90 | HC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 10.41 | HC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 11.56 | HC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 12.62 | HC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 13.01 | HC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 16.29 | HC |
| SRR1617549 | shoot_apical_meristem | no collect | 8.62 | HC |
| SRR1617550 | shoot_apical_meristem | no collect | 9.76 | HC |
| SRR1617554 | shoot_apical_meristem | no collect | 8.91 | HC |
| SRR1617556 | shoot_apical_meristem | no collect | 7.52 | HC |
| SRR1617557 | shoot_apical_meristem | no collect | 7.80 | HC |
| SRR1617558 | shoot_apical_meristem | no collect | 8.03 | HC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 7.23 | HC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 8.14 | HC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 6.37 | HC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 10.19 | HC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 8.76 | HC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 11.73 | HC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 15.95 | HC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 14.28 | HC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 17.81 | HC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 8.02 | HC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 5.68 | HC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 5.94 | HC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 5.20 | HC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 5.65 | HC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 7.08 | HC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 2.71 | HC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 3.18 | HC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 3.18 | HC |