| SRR358795 | callus | wt | 16.39 | HC |
| SRR358796 | callus | wt | 16.28 | HC |
| SRR358797 | callus | wt | 17.54 | HC |
| SRR358798 | callus | wt | 14.39 | HC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 4.81 | HC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 8.51 | HC |
| SRR4947495 | root | control | 7.32 | HC |
| SRR7265420 | coleoptile | 3dN1dA | 4.25 | HC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 8.01 | HC |
| SRR976168 | flag_leaf | wild_type | 10.67 | HC |
| SRR4457231 | flag_leaf | DAH4 | 4.09 | HC |
| SRR8060836 | leaf | wild_type | 3.48 | HC |
| SRR8240820 | leaf | wild_type | 2.90 | HC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 7.79 | HC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 7.47 | HC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 5.99 | HC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 3.72 | HC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 4.14 | HC |
| SRR1761788 | leaf | "wild_type,drought,2" | 15.99 | HC |
| SRR1761789 | leaf | "wild_type,drought,2" | 18.29 | HC |
| SRR1761790 | leaf | "wild_type,control,2" | 17.38 | HC |
| SRR1761791 | leaf | "wild_type,control,2" | 19.88 | HC |
| SRR1761780 | leaf | "wild_type,drought,1" | 15.98 | HC |
| SRR1761781 | leaf | "wild_type,drought,1" | 18.29 | HC |
| SRR1761782 | leaf | "wild_type,control,1" | 17.38 | HC |
| SRR1761783 | leaf | "wild_type,control,1" | 19.88 | HC |
| SRR1761528 | leaf | drought | 15.98 | HC |
| SRR1761529 | leaf | drought | 18.29 | HC |
| SRR1761530 | leaf | control | 17.38 | HC |
| SRR1761531 | leaf | control | 19.88 | HC |
| SRR504365 | leaf | wt | 13.11 | HC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 4.45 | HC |
| SRR3209769 | leaf | Watered;Long_Day | 10.47 | HC |
| SRR3209770 | leaf | Watered;Long_Day | 11.60 | HC |
| SRR3209771 | leaf | Drought;Long_Day | 16.41 | HC |
| SRR3209772 | leaf | Drought;Long_Day | 15.54 | HC |
| SRR3209773 | leaf | Watered;Short_Day | 10.78 | HC |
| SRR3209774 | leaf | Watered;Short_Day | 13.65 | HC |
| SRR3209775 | leaf | Drought;Short_Day | 14.67 | HC |
| SRR3209776 | leaf | Drought;Short_Day | 15.78 | HC |
| SRR3209777 | leaf | Watered;Long_Day | 9.95 | HC |
| SRR3209778 | leaf | Drought;Long_Day | 16.77 | HC |
| SRR3209779 | leaf | Watered;Short_Day | 12.30 | HC |
| SRR3209780 | leaf | Drought;Short_Day | 13.97 | HC |
| SRR6216699 | leaf | nontransgenic rice plant | 4.66 | HC |
| SRR6502085 | leaf | 100 mM NaCl | 20.09 | HC |
| SRR6502086 | leaf | 100 mM NaCl | 25.75 | HC |
| SRR6502087 | leaf | 100 mM NaCl | 23.43 | HC |
| SRR6502088 | leaf | control | 19.64 | HC |
| SRR6502089 | leaf | control | 16.21 | HC |
| SRR6502090 | leaf | control | 20.79 | HC |
| SRR6502097 | leaf | 100 mM NaCl | 19.24 | HC |
| SRR6502098 | leaf | 100 mM NaCl | 28.40 | HC |
| SRR6502099 | leaf | 100 mM NaCl | 21.17 | HC |
| SRR6502100 | leaf | control | 19.76 | HC |
| SRR6502101 | leaf | control | 20.22 | HC |
| SRR6502102 | leaf | control | 16.20 | HC |
| SRR5856927 | leaf | control | 2.80 | HC |
| SRR5856929 | leaf | control | 3.71 | HC |
| SRR5856930 | leaf | salt | 2.09 | HC |
| SRR5856931 | leaf | salt | 1.91 | HC |
| SRR5856933 | leaf | control | 3.40 | HC |
| SRR5856934 | leaf | control | 4.95 | HC |
| SRR5856935 | leaf | control | 4.51 | HC |
| SRR5856936 | leaf | salt | 1.87 | HC |
| SRR5856938 | leaf | salt | 4.26 | HC |
| SRR6053392 | leaf | ethanol solvent (untreated control) | 11.48 | HC |
| SRR6053395 | leaf | gibberellic acid (GA) | 16.38 | HC |
| SRR8582893 | panicle | PM | 9.20 | HC |
| SRR5110429 | panicle | Dawn | 9.94 | HC |
| SRR5110430 | panicle | Dawn | 6.77 | HC |
| SRR5110431 | panicle | Dawn | 9.68 | HC |
| SRR5110432 | panicle | Dawn | 12.58 | HC |
| SRR5110433 | panicle | Dawn + 3.5h | 14.74 | HC |
| SRR5110434 | panicle | Dawn + 3.5h | 11.72 | HC |
| SRR5110435 | panicle | Dawn + 3.5h | 9.98 | HC |
| SRR5110436 | panicle | Dawn + 3.5h | 12.52 | HC |
| SRR5110437 | panicle | Dawn + 7h | 19.68 | HC |
| SRR5110438 | panicle | Dawn + 7h | 14.61 | HC |
| SRR5110439 | panicle | Dawn + 7h | 8.17 | HC |
| SRR5110440 | panicle | Dawn + 7h | 13.53 | HC |
| SRR5110441 | panicle | Dawn + 10.5h | 9.84 | HC |
| SRR5110442 | panicle | Dawn + 10.5h | 13.24 | HC |
| SRR5110443 | panicle | Dawn + 10.5h | 15.65 | HC |
| SRR5110444 | panicle | Dawn + 10.5h | 13.89 | HC |
| SRR5110445 | panicle | Dusk | 6.60 | HC |
| SRR5110446 | panicle | Dusk | 11.50 | HC |
| SRR5110447 | panicle | Dusk | 12.04 | HC |
| SRR5110448 | panicle | Dusk | 17.00 | HC |
| SRR5110449 | panicle | Dawn + 14h | 15.79 | HC |
| SRR5110450 | panicle | Dawn + 14h | 10.78 | HC |
| SRR5110451 | panicle | Dawn + 14h | 8.97 | HC |
| SRR5110452 | panicle | Dawn + 14h | 16.23 | HC |
| SRR5110453 | panicle | Dawn + 17.5h | 6.45 | HC |
| SRR5110454 | panicle | Dawn + 17.5h | 6.81 | HC |
| SRR5110455 | panicle | Dawn + 17.5h | 5.77 | HC |
| SRR5110456 | panicle | Dawn + 17.5h | 15.59 | HC |
| SRR5110457 | panicle | Dawn + 21h | 8.18 | HC |
| SRR5110458 | panicle | Dawn + 21h | 8.67 | HC |
| SRR5110459 | panicle | Dawn + 21h | 11.19 | HC |
| SRR5110460 | panicle | Dawn + 21h | 8.85 | HC |
| SRR1633182 | panicle | WT | 6.30 | HC |
| SRR1633185 | panicle | WT | 9.14 | HC |
| SRR5126147 | root | "mock,1_day" | 5.59 | HC |
| SRR5126148 | root | "mock,1_day" | 10.09 | HC |
| SRR5126149 | root | "mock,1_day" | 9.52 | HC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 7.65 | HC |
| SRR5126155 | root | "mock,7_days" | 6.23 | HC |
| SRR5126157 | root | "mock,7_days" | 6.58 | HC |
| SRR5126165 | root | "mock,14_days" | 7.57 | HC |
| SRR5126167 | root | "mock,14_days" | 5.75 | HC |
| SRR5126169 | root | "mock,14_days" | 6.48 | HC |
| SRR3472897 | root | nontransgenic_rice_plant | 7.90 | HC |
| SRR3472900 | root | nontransgenic_rice_plant | 6.64 | HC |
| SRR4947478 | root | control | 13.24 | HC |
| SRR4947479 | root | control | 8.18 | HC |
| SRR4947480 | root | control | 23.94 | HC |
| SRR4947481 | root | control | 20.79 | HC |
| SRR4947482 | root | Al | 3.63 | HC |
| SRR4947483 | root | Al | 6.71 | HC |
| SRR4947484 | root | Al | 19.63 | HC |
| SRR4947485 | root | Al | 14.06 | HC |
| SRR4947487 | root | control | 12.20 | HC |
| SRR4947488 | root | control | 5.74 | HC |
| SRR4947489 | root | control | 5.35 | HC |
| SRR4947490 | root | Al | 12.74 | HC |
| SRR4947491 | root | Al | 27.41 | HC |
| SRR4947492 | root | Al | 10.71 | HC |
| SRR4947494 | root | control | 4.98 | HC |
| SRR4947498 | root | Al | 9.65 | HC |
| SRR4947499 | root | Al | 7.42 | HC |
| SRR4947500 | root | Al | 7.37 | HC |
| SRR4947501 | root | Al | 8.29 | HC |
| SRR4947503 | root | control | 7.24 | HC |
| SRR4947506 | root | Al | 7.54 | HC |
| SRR4947507 | root | Al | 32.36 | HC |
| SRR6502091 | root | 100 mM NaCl | 53.62 | HC |
| SRR6502092 | root | 100 mM NaCl | 52.82 | HC |
| SRR6502093 | root | 100 mM NaCl | 47.86 | HC |
| SRR6502094 | root | control | 59.77 | HC |
| SRR6502095 | root | control | 54.66 | HC |
| SRR6502096 | root | control | 59.01 | HC |
| SRR6502103 | root | 100 mM NaCl | 56.35 | HC |
| SRR6502104 | root | 100 mM NaCl | 56.79 | HC |
| SRR6502105 | root | 100 mM NaCl | 55.65 | HC |
| SRR6502106 | root | control | 57.18 | HC |
| SRR6502107 | root | control | 54.63 | HC |
| SRR6502108 | root | control | 51.47 | HC |
| SRR1740434 | root_differentiation_zone | wt | 45.61 | HC |
| SRR1740435 | root_differentiation_zone | wt | 45.20 | HC |
| SRR1740436 | root_differentiation_zone | wt | 74.24 | HC |
| SRR1740431 | root_elongation_zone | wt | 20.52 | HC |
| SRR1740432 | root_elongation_zone | wt | 15.08 | HC |
| SRR1740433 | root_elongation_zone | wt | 13.97 | HC |
| SRR1740428 | root_meristematic_zone | wt | 17.55 | HC |
| SRR1740429 | root_meristematic_zone | wt | 21.49 | HC |
| SRR1740430 | root_meristematic_zone | wt | 23.33 | HC |
| SRR2154084 | seedling | wt | 4.16 | HC |
| SRR2154087 | seedling | wt | 5.65 | HC |
| SRR2857720 | seedling | drought_stress_1h | 6.25 | HC |
| SRR2857721 | seedling | drought_stress_6h | 3.05 | HC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 10.06 | HC |
| SRR1944583 | seedling | no_treatment | 17.86 | HC |
| SRR358791 | seedling | wt | 13.65 | HC |
| SRR358792 | seedling | wt | 12.32 | HC |
| SRR358793 | seedling | wt | 12.06 | HC |
| SRR358794 | seedling | wt | 11.54 | HC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 4.54 | HC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 6.33 | HC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 7.48 | HC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 10.73 | HC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 8.95 | HC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 7.73 | HC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 15.27 | HC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 13.30 | HC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 12.81 | HC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 23.18 | HC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 15.02 | HC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 16.25 | HC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 13.38 | HC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 11.32 | HC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 14.89 | HC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 11.38 | HC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 11.53 | HC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 16.94 | HC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 3.83 | HC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 2.85 | HC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 4.03 | HC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 12.29 | HC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 14.13 | HC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 34.70 | HC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 30.54 | HC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 33.63 | HC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 24.07 | HC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 28.86 | HC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 24.14 | HC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 30.05 | HC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 26.77 | HC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 28.92 | HC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 29.36 | HC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 19.26 | HC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 27.95 | HC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 28.29 | HC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 16.15 | HC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 27.97 | HC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 29.94 | HC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 27.58 | HC |
| SRR1617550 | shoot_apical_meristem | no collect | 16.37 | HC |
| SRR1617553 | shoot_apical_meristem | no collect | 18.29 | HC |
| SRR1617556 | shoot_apical_meristem | no collect | 16.45 | HC |
| SRR1617557 | shoot_apical_meristem | no collect | 17.89 | HC |
| SRR1617558 | shoot_apical_meristem | no collect | 17.78 | HC |
| SRR1617559 | shoot_apical_meristem | no collect | 20.16 | HC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 6.43 | HC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 24.43 | HC |